Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6545
Gene name
Locationscaffold_58:19882..21022
Strand-
Gene length (bp)1140
Transcript length (bp)975
Coding sequence length (bp)972
Protein length (aa) 324

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03878 YIF1 YIF1 1.2E-100 70 322

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P87148|YIF1_SCHPO Protein transport protein yif1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrf1 PE=3 SV=1 10 322 2.0E-75
sp|Q6PC24|YIF1A_DANRE Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1 21 289 2.0E-43
sp|Q3T196|YIF1A_BOVIN Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1 27 290 3.0E-42
sp|Q5U3G6|YIF1B_DANRE Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2 23 322 8.0E-42
sp|Q4FZQ0|YF1BB_XENLA Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1 68 322 9.0E-41
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Swissprot ID Swissprot Description Start End E-value
sp|P87148|YIF1_SCHPO Protein transport protein yif1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrf1 PE=3 SV=1 10 322 2.0E-75
sp|Q6PC24|YIF1A_DANRE Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1 21 289 2.0E-43
sp|Q3T196|YIF1A_BOVIN Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1 27 290 3.0E-42
sp|Q5U3G6|YIF1B_DANRE Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2 23 322 8.0E-42
sp|Q4FZQ0|YF1BB_XENLA Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1 68 322 9.0E-41
sp|Q6P301|YIF1B_XENTR Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1 68 322 1.0E-40
sp|Q6GN58|YF1BA_XENLA Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1 68 322 3.0E-40
sp|O95070|YIF1A_HUMAN Protein YIF1A OS=Homo sapiens GN=YIF1A PE=1 SV=2 27 291 3.0E-39
sp|Q5BJH7|YIF1B_HUMAN Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1 65 322 6.0E-38
sp|Q9CX30|YIF1B_MOUSE Protein YIF1B OS=Mus musculus GN=Yif1b PE=1 SV=2 68 322 3.0E-37
sp|Q91XB7|YIF1A_MOUSE Protein YIF1A OS=Mus musculus GN=Yif1a PE=1 SV=1 28 276 2.0E-35
sp|P53845|YIF1_YEAST Protein transport protein YIF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIF1 PE=1 SV=1 1 321 7.0E-34
sp|Q6PEC3|YIF1B_RAT Protein YIF1B OS=Rattus norvegicus GN=Yif1b PE=2 SV=2 27 183 1.0E-18
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GO

GO Term Description Terminal node
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Yes
GO:0005789 endoplasmic reticulum membrane Yes
GO:0016192 vesicle-mediated transport No
GO:0051649 establishment of localization in cell No
GO:0051641 cellular localization No
GO:0009987 cellular process No
GO:0051234 establishment of localization No
GO:0046907 intracellular transport No
GO:0048193 Golgi vesicle transport No
GO:0006810 transport No
GO:0016020 membrane No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No
GO:0051179 localization No
GO:0008150 biological_process No
GO:0031090 organelle membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

Domain # Start End Length
1 159 178 19
2 193 215 22
3 222 244 22
4 254 271 17
5 305 322 17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6545
MQRAPYGQSPPLHHPVPQHVSTVPQLRSPPPPPGSAQSQQQSYGGTPFHQQQQQGAAAGNMFGAYGQFINDPAAQ
VAAQFGQTAFKHGQEYVEQSFGRYVNVSALKHYFNVSNFYVLNKLYLVLFPWRHKPWSRKQAVGANGQEGWYLPP
REDINSPDMYIPVMALVTFILLSTLIAGLRGKFQPELLGYTATTGMVVVIVEIVALKLGCYLLSISSQSQLLDLI
AYSGYKFVGIIVTIAVAEISNGGKGTGGWAGWAVFFYTFLANSLFLMRSLKYVLLPETSGNTGGPMQTDSRAKRN
QRTQFLFFYSYIVQFFFMWVLTRA
Coding >Ophio5|6545
ATGCAGCGGGCGCCGTACGGGCAATCGCCTCCGTTGCACCACCCCGTGCCCCAGCACGTCTCGACGGTGCCCCAG
CTGCGGTCGCCTCCTCCGCCGCCGGGTTCAGCTCAGTCGCAACAGCAGAGCTATGGCGGGACTCCTTTTCACCAG
CAGCAGCAGCAGGGCGCGGCGGCGGGGAACATGTTTGGTGCCTATGGACAATTTATCAACGATCCGGCTGCTCAG
GTTGCTGCCCAGTTTGGCCAGACGGCTTTTAAGCATGGCCAGGAATATGTCGAGCAGAGTTTTGGCCGTTACGTC
AACGTCTCGGCCCTCAAGCACTACTTCAACGTCTCCAACTTCTATGTCCTCAACAAGCTATATCTCGTCCTCTTT
CCCTGGCGCCACAAGCCTTGGTCTCGCAAGCAAGCTGTTGGCGCCAATGGCCAGGAGGGATGGTATCTGCCTCCG
CGAGAAGATATCAACAGCCCGGACATGTACATCCCAGTCATGGCTCTCGTCACCTTCATCCTTCTTTCAACGCTC
ATCGCCGGCCTGAGGGGCAAGTTCCAGCCAGAGCTGTTAGGGTACACGGCGACGACGGGCATGGTCGTGGTTATT
GTCGAGATTGTCGCCCTCAAGCTGGGCTGCTACCTGTTGAGCATCTCGAGTCAGTCTCAGCTCCTCGACCTCATC
GCCTATTCCGGGTACAAGTTTGTCGGCATCATTGTGACCATTGCCGTGGCCGAAATTTCCAACGGCGGCAAGGGA
ACCGGCGGCTGGGCTGGCTGGGCCGTCTTCTTCTACACCTTTTTGGCCAATTCTTTGTTCTTGATGCGGTCCTTG
AAATACGTGTTGCTGCCGGAGACGTCTGGCAACACGGGCGGCCCTATGCAGACCGACTCGCGAGCAAAACGCAAC
CAAAGGACGCAGTTTCTGTTTTTCTACTCGTATATTGTCCAGTTCTTCTTTATGTGGGTTCTCACCCGAGCA
Transcript >Ophio5|6545
ATGCAGCGGGCGCCGTACGGGCAATCGCCTCCGTTGCACCACCCCGTGCCCCAGCACGTCTCGACGGTGCCCCAG
CTGCGGTCGCCTCCTCCGCCGCCGGGTTCAGCTCAGTCGCAACAGCAGAGCTATGGCGGGACTCCTTTTCACCAG
CAGCAGCAGCAGGGCGCGGCGGCGGGGAACATGTTTGGTGCCTATGGACAATTTATCAACGATCCGGCTGCTCAG
GTTGCTGCCCAGTTTGGCCAGACGGCTTTTAAGCATGGCCAGGAATATGTCGAGCAGAGTTTTGGCCGTTACGTC
AACGTCTCGGCCCTCAAGCACTACTTCAACGTCTCCAACTTCTATGTCCTCAACAAGCTATATCTCGTCCTCTTT
CCCTGGCGCCACAAGCCTTGGTCTCGCAAGCAAGCTGTTGGCGCCAATGGCCAGGAGGGATGGTATCTGCCTCCG
CGAGAAGATATCAACAGCCCGGACATGTACATCCCAGTCATGGCTCTCGTCACCTTCATCCTTCTTTCAACGCTC
ATCGCCGGCCTGAGGGGCAAGTTCCAGCCAGAGCTGTTAGGGTACACGGCGACGACGGGCATGGTCGTGGTTATT
GTCGAGATTGTCGCCCTCAAGCTGGGCTGCTACCTGTTGAGCATCTCGAGTCAGTCTCAGCTCCTCGACCTCATC
GCCTATTCCGGGTACAAGTTTGTCGGCATCATTGTGACCATTGCCGTGGCCGAAATTTCCAACGGCGGCAAGGGA
ACCGGCGGCTGGGCTGGCTGGGCCGTCTTCTTCTACACCTTTTTGGCCAATTCTTTGTTCTTGATGCGGTCCTTG
AAATACGTGTTGCTGCCGGAGACGTCTGGCAACACGGGCGGCCCTATGCAGACCGACTCGCGAGCAAAACGCAAC
CAAAGGACGCAGTTTCTGTTTTTCTACTCGTATATTGTCCAGTTCTTCTTTATGTGGGTTCTCACCCGAGCATAA
Gene >Ophio5|6545
ATGCAGCGGGCGCCGTACGGGCAATCGCCTCCGTTGCACCACCCCGTGCCCCAGCACGTCTCGACGGTGCCCCAG
CTGCGGTCGCCTCCTCCGCCGCCGGGTTCAGCTCAGTCGCAACAGCAGAGCTATGGCGGGACTCCTTTTCACCAG
CAGCAGCAGCAGGGCGCGGCGGCGGGGAACATGTTTGGTGCCTATGGACAATTTATCAACGATCCGGCTGCTCAG
GTTGCTGCCCAGTTTGGCCAGACGGCTTTTAAGCATGGCCAGGAATATGTCGAGCAGAGTGTGCGTCTACTTTCC
ACATGTCATTTGCCTCTGTCTGAAGCTGACTTGCTTGCGGGCAGTTTGGCCGTTACGTCAACGTCTCGGCCCTCA
AGCACTACTTCAACGTCTCCAACTTCTATGTCCTCAACAAGCTATATCTCGTCCTCTTTCCCTGGCGCCACAAGC
CTTGGTCTCGCAAGCAAGCTGTTGGCGCCAATGGCCAGGAGGGATGGTATCTGCCTCCGCGAGAAGATATCAACA
GCCCGGACATGTACATCCCAGGTATGGAATCCATGTGTCCCCTTCTCGCACCGCCGCTGACAAGCACTCGTCTCA
GTCATGGCTCTCGTCACCTTCATCCTTCTTTCAACGCTCATCGCCGGCCTGAGGGGCAAGTTCCAGCCAGAGCTG
TTAGGGTACACGGCGACGACGGGCATGGTCGTGGTTATTGTCGAGATTGTCGCCCTCAAGCTGGGCTGCTACCTG
TTGAGCATCTCGAGTCAGTCTCAGCTCCTCGACCTCATCGCCTATTCCGGGTACAAGTTTGTCGGCATCATTGTG
ACCATTGCCGTGGCCGAAATTTCCAACGGCGGCAAGGGAACCGGCGGCTGGGCTGGCTGGGCCGTCTTCTTCTAC
ACCTTTTTGGCCAATTCTTTGTTCTTGGTATGCTCTTGAAATTCCGTTCGTCGCTGGCTGAACTGACTCGCTCCC
AAGATGCGGTCCTTGAAATACGTGTTGCTGCCGGAGACGTCTGGCAACACGGGCGGCCCTATGCAGACCGACTCG
CGAGCAAAACGCAACCAAAGGACGCAGTTTCTGTTTTTCTACTCGTATATTGTCCAGTTCTTCTTTATGTGGGTT
CTCACCCGAGCATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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