Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6544
Gene name
Locationscaffold_58:18497..19190
Strand-
Gene length (bp)693
Transcript length (bp)630
Coding sequence length (bp)627
Protein length (aa) 209

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04117 Mpv17_PMP22 Mpv17 / PMP22 family 1.4E-12 150 204

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 25 0.5

Transmembrane Domains

Domain # Start End Length
1 10 29 19
2 94 116 22
3 160 182 22
4 189 208 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6544
MALPPLVTATLQAALLGALSNVLAQLLAARGTTESTTKAGDNSVDWIPVLQFLLFSIVSTPPNFLWQEFLESTYP
AHPRKNDKSLSIYNTIAKFVLDQTVGAVVNTLLFSLFIHALQDAMASAPRIASLPAAVAYLARPGAVDLARVDTA
AVVEAARRDFWPVVVAGLKVWPAVSLLNFTVVKTVPARNLVGALAGVAWGIYMSTMAAQ
Coding >Ophio5|6544
ATGGCCTTGCCACCTCTGGTAACAGCGACGCTTCAGGCGGCCCTCTTGGGCGCGCTGTCCAACGTTCTGGCGCAG
CTGCTGGCAGCGCGAGGCACAACCGAGAGCACCACCAAGGCGGGCGACAACTCGGTAGACTGGATCCCCGTGCTA
CAGTTTCTACTGTTTAGCATCGTCAGCACGCCGCCCAACTTTCTCTGGCAAGAGTTTCTCGAGTCGACGTATCCG
GCTCACCCGCGCAAGAACGACAAGTCGCTATCCATCTACAACACGATTGCCAAGTTCGTTCTCGACCAGACCGTC
GGCGCCGTCGTCAACACGCTCCTCTTCAGCCTCTTTATCCACGCGCTTCAGGACGCCATGGCGTCTGCTCCGCGC
ATAGCGAGCTTGCCCGCCGCCGTGGCCTACTTGGCGAGACCCGGCGCCGTGGACCTAGCTCGCGTTGATACTGCT
GCTGTTGTGGAAGCGGCGAGACGGGACTTTTGGCCTGTTGTTGTCGCGGGGCTCAAGGTTTGGCCTGCTGTTAGC
TTGCTCAACTTTACGGTTGTGAAGACGGTGCCGGCGAGGAACTTGGTGGGTGCTTTGGCGGGCGTTGCTTGGGGA
ATTTATATGAGTACTATGGCTGCGCAG
Transcript >Ophio5|6544
ATGGCCTTGCCACCTCTGGTAACAGCGACGCTTCAGGCGGCCCTCTTGGGCGCGCTGTCCAACGTTCTGGCGCAG
CTGCTGGCAGCGCGAGGCACAACCGAGAGCACCACCAAGGCGGGCGACAACTCGGTAGACTGGATCCCCGTGCTA
CAGTTTCTACTGTTTAGCATCGTCAGCACGCCGCCCAACTTTCTCTGGCAAGAGTTTCTCGAGTCGACGTATCCG
GCTCACCCGCGCAAGAACGACAAGTCGCTATCCATCTACAACACGATTGCCAAGTTCGTTCTCGACCAGACCGTC
GGCGCCGTCGTCAACACGCTCCTCTTCAGCCTCTTTATCCACGCGCTTCAGGACGCCATGGCGTCTGCTCCGCGC
ATAGCGAGCTTGCCCGCCGCCGTGGCCTACTTGGCGAGACCCGGCGCCGTGGACCTAGCTCGCGTTGATACTGCT
GCTGTTGTGGAAGCGGCGAGACGGGACTTTTGGCCTGTTGTTGTCGCGGGGCTCAAGGTTTGGCCTGCTGTTAGC
TTGCTCAACTTTACGGTTGTGAAGACGGTGCCGGCGAGGAACTTGGTGGGTGCTTTGGCGGGCGTTGCTTGGGGA
ATTTATATGAGTACTATGGCTGCGCAGTAA
Gene >Ophio5|6544
ATGGCCTTGCCACCTCTGGTAACAGCGACGCTTCAGGCGGCCCTCTTGGGCGCGCTGTCCAACGTTCTGGCGCAG
CTGCTGGCAGCGCGAGGCACAACCGAGAGCACCACCAAGGCGGGCGACAACTCGGTAGACTGGATCCCCGTGCTA
CAGTTTCTACTGTTTAGCATCGTCAGCACGCCGCCCAACTTTCTCTGGTGAGCTCCGTCTTGTTCTTCGACGACA
ACTGTTGAAGCGCGGTCGCTTACCAGACAAACCAGGCAAGAGTTTCTCGAGTCGACGTATCCGGCTCACCCGCGC
AAGAACGACAAGTCGCTATCCATCTACAACACGATTGCCAAGTTCGTTCTCGACCAGACCGTCGGCGCCGTCGTC
AACACGCTCCTCTTCAGCCTCTTTATCCACGCGCTTCAGGACGCCATGGCGTCTGCTCCGCGCATAGCGAGCTTG
CCCGCCGCCGTGGCCTACTTGGCGAGACCCGGCGCCGTGGACCTAGCTCGCGTTGATACTGCTGCTGTTGTGGAA
GCGGCGAGACGGGACTTTTGGCCTGTTGTTGTCGCGGGGCTCAAGGTTTGGCCTGCTGTTAGCTTGCTCAACTTT
ACGGTTGTGAAGACGGTGCCGGCGAGGAACTTGGTGGGTGCTTTGGCGGGCGTTGCTTGGGGAATTTATATGAGT
ACTATGGCTGCGCAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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