Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|6508
Gene name
Location	scaffold_572:648..1760
Strand	+
Gene length (bp)	1112
Transcript length (bp)	969
Coding sequence length (bp)	966
Protein length (aa)	322

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04488	Gly_transf_sug	Glycosyltransferase sugar-binding region containing DXD motif	2.0E-14	86	167

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UT67\|IMT2_SCHPO	Inositol phosphoceramide mannosyltransferase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4F11.04c PE=3 SV=1	66	314	1.0E-49
sp\|P33300\|SUR1_YEAST	Mannosyl phosphorylinositol ceramide synthase SUR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUR1 PE=1 SV=1	8	288	2.0E-47
sp\|P38287\|CSH1_YEAST	Mannosyl phosphorylinositol ceramide synthase CSH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSH1 PE=1 SV=1	8	314	5.0E-47
sp\|Q10323\|IMT3_SCHPO	Inositol phosphoceramide mannosyltransferase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.11c PE=1 SV=1	62	283	8.0E-41
sp\|O14084\|IMT1_SCHPO	Inositol phosphoceramide mannosyltransferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imt1 PE=3 SV=2	58	280	5.0E-26

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UT67\|IMT2_SCHPO	Inositol phosphoceramide mannosyltransferase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4F11.04c PE=3 SV=1	66	314	1.0E-49
sp\|P33300\|SUR1_YEAST	Mannosyl phosphorylinositol ceramide synthase SUR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUR1 PE=1 SV=1	8	288	2.0E-47
sp\|P38287\|CSH1_YEAST	Mannosyl phosphorylinositol ceramide synthase CSH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSH1 PE=1 SV=1	8	314	5.0E-47
sp\|Q10323\|IMT3_SCHPO	Inositol phosphoceramide mannosyltransferase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.11c PE=1 SV=1	62	283	8.0E-41
sp\|O14084\|IMT1_SCHPO	Inositol phosphoceramide mannosyltransferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imt1 PE=3 SV=2	58	280	5.0E-26
sp\|Q5UQW4\|YL373_MIMIV	Uncharacterized glycosyltransferase L373 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L373 PE=3 SV=1	66	194	4.0E-17

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	12	34	22
2	284	306	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	58.49	30.39	86.59
CcL	In ants, during behavior modification	193.63	100.30	286.96
CcD	In ants, recently dead	109.74	59.29	160.19

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.004291	yes
CcL	CcD	0.013840	yes

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|6508 MTSSHARLRRLVVWLVAAGLALILVNFLYRVAVSVNRIFGLHAGRALTQEQVLAVYRDGPRRSRPVPRILHQIFH NWHDPGNETLPADWQAVRESCLALHPTWEHKLWTEATSRHFIRTEYPHFLDMYDAFKFPVQRVDALRYFLMRHYG GIYMDLDNGCRASLEPLLYYPAWVTDGGQGTLSNNILGAEPEHPFWILMTDSLAPWAGDFVLPYVTISYATGQWY ETELWQIYHAQKPNSEPDLLRIMMDMRPTGAPWVFFTAGRGGTWDNWDNQVLGWIGNHLFQSVFYAVVGVGLVAG AVYLVSQALRRGRYRRLVNQTP
Coding	>Ophio5\|6508 ATGACCTCGTCGCACGCTCGTCTCCGGCGCCTCGTCGTCTGGCTGGTAGCGGCCGGTCTGGCCCTCATCCTCGTC AACTTCCTTTACCGAGTCGCCGTCTCCGTCAACCGCATCTTCGGCCTCCATGCCGGTCGGGCCTTGACGCAGGAG CAGGTCCTCGCCGTCTATCGCGACGGGCCGAGACGGTCCAGACCGGTGCCGCGCATTTTACATCAGATCTTTCAT AACTGGCATGATCCGGGCAATGAGACGCTGCCGGCGGATTGGCAGGCCGTTCGCGAATCGTGTCTGGCGCTGCAT CCGACCTGGGAGCACAAGCTCTGGACCGAAGCTACCTCTCGCCACTTCATCCGTACCGAGTATCCCCATTTCCTC GACATGTACGACGCCTTCAAGTTTCCCGTCCAGCGCGTCGACGCGTTGCGATACTTTCTCATGAGGCACTATGGC GGCATCTACATGGACCTCGACAACGGCTGTCGAGCCAGTCTCGAACCTCTCCTCTACTACCCAGCCTGGGTAACC GACGGCGGCCAAGGCACCCTCAGCAATAATATACTCGGCGCCGAACCCGAGCATCCGTTCTGGATCCTCATGACC GATTCCCTCGCGCCCTGGGCTGGCGACTTTGTCCTGCCGTACGTCACCATCAGCTACGCTACCGGTCAGTGGTAC GAGACGGAGCTATGGCAGATCTATCACGCCCAGAAGCCGAACAGCGAGCCCGATCTGCTGCGCATCATGATGGAC ATGCGTCCGACCGGCGCCCCTTGGGTCTTCTTCACCGCCGGCCGTGGCGGCACCTGGGATAACTGGGACAATCAG GTTCTTGGCTGGATCGGCAACCACCTGTTTCAATCCGTCTTCTATGCCGTCGTCGGTGTCGGCCTCGTTGCTGGC GCCGTCTACCTCGTCAGCCAAGCCTTGAGGCGAGGACGGTACCGAAGGCTCGTGAACCAGACGCCC
Transcript	>Ophio5\|6508 ATGACCTCGTCGCACGCTCGTCTCCGGCGCCTCGTCGTCTGGCTGGTAGCGGCCGGTCTGGCCCTCATCCTCGTC AACTTCCTTTACCGAGTCGCCGTCTCCGTCAACCGCATCTTCGGCCTCCATGCCGGTCGGGCCTTGACGCAGGAG CAGGTCCTCGCCGTCTATCGCGACGGGCCGAGACGGTCCAGACCGGTGCCGCGCATTTTACATCAGATCTTTCAT AACTGGCATGATCCGGGCAATGAGACGCTGCCGGCGGATTGGCAGGCCGTTCGCGAATCGTGTCTGGCGCTGCAT CCGACCTGGGAGCACAAGCTCTGGACCGAAGCTACCTCTCGCCACTTCATCCGTACCGAGTATCCCCATTTCCTC GACATGTACGACGCCTTCAAGTTTCCCGTCCAGCGCGTCGACGCGTTGCGATACTTTCTCATGAGGCACTATGGC GGCATCTACATGGACCTCGACAACGGCTGTCGAGCCAGTCTCGAACCTCTCCTCTACTACCCAGCCTGGGTAACC GACGGCGGCCAAGGCACCCTCAGCAATAATATACTCGGCGCCGAACCCGAGCATCCGTTCTGGATCCTCATGACC GATTCCCTCGCGCCCTGGGCTGGCGACTTTGTCCTGCCGTACGTCACCATCAGCTACGCTACCGGTCAGTGGTAC GAGACGGAGCTATGGCAGATCTATCACGCCCAGAAGCCGAACAGCGAGCCCGATCTGCTGCGCATCATGATGGAC ATGCGTCCGACCGGCGCCCCTTGGGTCTTCTTCACCGCCGGCCGTGGCGGCACCTGGGATAACTGGGACAATCAG GTTCTTGGCTGGATCGGCAACCACCTGTTTCAATCCGTCTTCTATGCCGTCGTCGGTGTCGGCCTCGTTGCTGGC GCCGTCTACCTCGTCAGCCAAGCCTTGAGGCGAGGACGGTACCGAAGGCTCGTGAACCAGACGCCCTGA
Gene	>Ophio5\|6508 ATGACCTCGTCGCACGCTCGTCTCCGGCGCCTCGTCGTCTGGCTGGTAGCGGCCGGTCTGGCCCTCATCCTCGTC AACTTCCTTTACCGAGTCGCCGTCTCCGTCAACCGCATCTTCGGCCTCCATGCCGGTCGGGCCTTGACGCAGGAG CAGGTCCTCGCCGTCTATCGCGACGGGCCGAGACGGTCCAGACCGGTGCCGCGCATTTTACATCAGATCTTTCAT AACTGGCATGATCCGGGCAATGAGACGCTGCCGGCGGATTGGCAGGCCGTTCGCGAATCGTGTCTGGCGCTGCAT CCGACCTGGGAGCACAAGGTGCGCGCGCCAAGAAGCCCTCTTCATGTTCTCGTTGTTGTTGTTGTTGCTGTGGCT GATATCGCGAGTTCATAGCTCTGGACCGAAGCTACCTCTCGCCACTTCATCCGTACCGAGTATCCCCATTTCCTC GACATGTACGACGCCTTCAAGTTTCCCGTCCAGCGCGTCGACGCGTTGCGATACTTTCTCATGAGGCACTATGGC GGCATCTACATGGACCTCGACAACGTACGGGTCCCTCTCTTCCAAATCATTATGCAAAAATCCCTTGGCTGATGC CCGTTTGCCGTCTCTAGGGCTGTCGAGCCAGTCTCGAACCTCTCCTCTACTACCCAGCCTGGGTAACCGACGGCG GCCAAGGCACCCTCAGCAATAATATACTCGGCGCCGAACCCGAGCATCCGTTCTGGATCCTCATGACCGATTCCC TCGCGCCCTGGGCTGGCGACTTTGTCCTGCCGTACGTCACCATCAGCTACGCTACCGGTCAGTGGTACGAGACGG AGCTATGGCAGATCTATCACGCCCAGAAGCCGAACAGCGAGCCCGATCTGCTGCGCATCATGATGGACATGCGTC CGACCGGCGCCCCTTGGGTCTTCTTCACCGCCGGCCGTGGCGGCACCTGGGATAACTGGGACAATCAGGTTCTTG GCTGGATCGGCAACCACCTGTTTCAATCCGTCTTCTATGCCGTCGTCGGTGTCGGCCTCGTTGCTGGCGCCGTCT ACCTCGTCAGCCAAGCCTTGAGGCGAGGACGGTACCGAAGGCTCGTGAACCAGACGCCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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