© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|6452 |
| Gene name | |
| Location | scaffold_565:5689..7853 |
| Strand | + |
| Gene length (bp) | 2164 |
| Transcript length (bp) | 1866 |
| Coding sequence length (bp) | 1863 |
| Protein length (aa) | 621 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03547 | Mem_trans | Membrane transport protein | 3.6E-45 | 125 | 606 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38355|YB8B_YEAST | Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1 | 124 | 261 | 2.0E-42 |
| sp|P38355|YB8B_YEAST | Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1 | 442 | 618 | 4.0E-40 |
| sp|O14197|YDQ4_SCHPO | Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1 | 126 | 314 | 2.0E-38 |
| sp|O14197|YDQ4_SCHPO | Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1 | 430 | 617 | 1.0E-33 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 128 | 150 | 22 |
| 2 | 160 | 182 | 22 |
| 3 | 436 | 458 | 22 |
| 4 | 478 | 500 | 22 |
| 5 | 521 | 543 | 22 |
| 6 | 556 | 575 | 19 |
| 7 | 596 | 618 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 103.27 | 54.54 | 152.00 |
| CcL | In ants, during behavior modification | 316.09 | 134.52 | 497.66 |
| CcD | In ants, recently dead | 78.59 | 42.18 | 115.01 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.245046 | no |
| CcL | CcD | 0.000286 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6452 MPAPSISPSLRDKDILQNTALALRAIVSSSAADDALRLRLLRINRHGQQTSLSNTLRGPGRREVEAHDGICQFLR RARLIPSGPRCPECLRLPDGRPPRTADGPPLATSPVSPRLRSRPRGRLHKQKFLANLNVMLFTPCLIFTKLASQL NAEKLTELAIIPAIFVLQTVISWIVSTLMARAFRFNRRASNFVTAMGVFGNSNSLPISLVLSLSQTIKGLHWDRI AGDNDDEVAARGILYLLIFQQLGQLVRWSWGYHVLLAPKDKYPEYQQQIVEEGEGRYGEAHSEQETRRLIDGFDD GETEDDDERHSVDSRTYVPDGQTPLAGTSRTSADSSDDESAPKKLQHPKCAPRAEIAPRSVPHTLAFPRVGSSGD RSPPRTRSDGIWASHKASAANGFRSLQARTSRCLDSLGKRIPDPVRVLLSVLRTASRKTAYFIWEFMNPPLWAML IAVTVASIPALQKLFFEEESFINNSVTSAVKSSGGVAVPLILVVLGANLARNTMARDDSHDPEEEQVGTKLLVAA LLSRMVLPTVIMAPILALMAKYLPVSILDDPIFIVVCFLLTGAPSALQLAQICQINAVYEKTMGRVLFQSYVIWI LPSTLILVMMALEVVQWAAAP |
| Coding | >Ophio5|6452 ATGCCTGCGCCCTCCATCTCACCATCGCTGCGCGATAAGGATATTTTGCAGAATACGGCCTTGGCGCTGCGCGCT ATTGTCTCCTCGTCTGCGGCCGATGACGCATTGAGACTTCGCCTCCTCCGGATCAACCGACACGGTCAACAAACG TCACTTTCTAACACGCTTCGCGGACCTGGACGCCGCGAAGTCGAGGCTCACGATGGAATCTGCCAATTCCTTCGC CGGGCCCGTCTCATACCGTCTGGCCCACGTTGCCCGGAATGCCTACGACTACCCGATGGCCGTCCTCCAAGGACA GCCGACGGGCCACCCCTCGCTACCTCACCTGTGTCTCCTCGTCTTCGAAGCCGTCCTCGAGGTCGTCTGCACAAG CAGAAATTTCTGGCCAACCTCAATGTCATGTTGTTTACCCCATGCCTGATCTTTACGAAACTGGCATCCCAACTA AACGCCGAGAAGCTGACCGAGCTCGCCATTATCCCCGCCATCTTTGTCCTCCAGACCGTGATATCGTGGATTGTC TCCACCCTGATGGCCAGGGCCTTTCGATTCAACCGACGAGCCTCCAACTTCGTCACTGCCATGGGTGTCTTCGGC AACTCGAATTCTCTACCCATCTCTCTCGTCCTCTCCCTTTCACAGACCATCAAGGGGCTCCACTGGGATCGCATT GCAGGGGATAACGACGATGAAGTCGCCGCCCGAGGCATCCTCTATCTCCTCATATTTCAGCAACTTGGCCAGCTG GTCCGATGGAGCTGGGGGTACCATGTGCTGCTTGCCCCCAAGGACAAATACCCCGAGTACCAGCAACAAATTGTC GAAGAGGGCGAGGGCCGCTACGGCGAGGCCCACAGCGAGCAGGAAACCCGACGGCTTATCGACGGCTTCGACGAC GGAGAGACTGAAGACGACGACGAGCGCCATAGTGTCGACTCTCGCACGTATGTGCCTGACGGCCAGACCCCGCTT GCCGGCACCTCGAGGACTTCGGCCGACTCGAGCGACGACGAGTCCGCACCCAAGAAGCTGCAGCATCCCAAGTGC GCCCCTCGAGCCGAAATTGCTCCCAGGAGCGTGCCCCATACTCTGGCCTTTCCCCGGGTCGGCAGCAGCGGCGAC CGCAGCCCGCCTCGCACCAGGTCCGACGGCATCTGGGCTTCGCACAAGGCGTCGGCCGCCAACGGGTTTCGTTCT CTGCAAGCCAGGACATCTCGCTGCCTGGATAGCCTCGGCAAGAGGATACCGGACCCGGTCCGTGTACTCCTGTCA GTCCTGAGGACGGCCTCGAGAAAGACGGCGTATTTCATCTGGGAGTTTATGAACCCGCCGCTGTGGGCGATGCTC ATTGCCGTCACGGTTGCGTCGATTCCTGCGCTTCAGAAGCTCTTCTTCGAGGAGGAATCGTTCATCAACAACAGC GTGACGAGTGCCGTCAAGTCGAGCGGCGGCGTTGCCGTTCCCCTGATCCTGGTCGTTCTGGGCGCCAACCTTGCG AGAAACACGATGGCGCGGGACGACAGCCACGACCCCGAAGAGGAGCAGGTCGGAACCAAGCTCCTGGTGGCGGCC TTGTTGAGCCGGATGGTCCTACCGACCGTCATCATGGCTCCGATCCTGGCTCTCATGGCAAAGTACTTGCCCGTC AGCATTCTTGACGATCCCATCTTCATCGTCGTCTGCTTCCTACTGACCGGTGCCCCGAGCGCGTTGCAGCTGGCT CAGATCTGCCAGATCAACGCCGTGTACGAGAAGACGATGGGCCGGGTGCTCTTCCAGAGCTACGTCATATGGATT CTACCTTCCACGTTGATCCTTGTCATGATGGCTCTCGAAGTTGTACAGTGGGCGGCTGCGCCA |
| Transcript | >Ophio5|6452 ATGCCTGCGCCCTCCATCTCACCATCGCTGCGCGATAAGGATATTTTGCAGAATACGGCCTTGGCGCTGCGCGCT ATTGTCTCCTCGTCTGCGGCCGATGACGCATTGAGACTTCGCCTCCTCCGGATCAACCGACACGGTCAACAAACG TCACTTTCTAACACGCTTCGCGGACCTGGACGCCGCGAAGTCGAGGCTCACGATGGAATCTGCCAATTCCTTCGC CGGGCCCGTCTCATACCGTCTGGCCCACGTTGCCCGGAATGCCTACGACTACCCGATGGCCGTCCTCCAAGGACA GCCGACGGGCCACCCCTCGCTACCTCACCTGTGTCTCCTCGTCTTCGAAGCCGTCCTCGAGGTCGTCTGCACAAG CAGAAATTTCTGGCCAACCTCAATGTCATGTTGTTTACCCCATGCCTGATCTTTACGAAACTGGCATCCCAACTA AACGCCGAGAAGCTGACCGAGCTCGCCATTATCCCCGCCATCTTTGTCCTCCAGACCGTGATATCGTGGATTGTC TCCACCCTGATGGCCAGGGCCTTTCGATTCAACCGACGAGCCTCCAACTTCGTCACTGCCATGGGTGTCTTCGGC AACTCGAATTCTCTACCCATCTCTCTCGTCCTCTCCCTTTCACAGACCATCAAGGGGCTCCACTGGGATCGCATT GCAGGGGATAACGACGATGAAGTCGCCGCCCGAGGCATCCTCTATCTCCTCATATTTCAGCAACTTGGCCAGCTG GTCCGATGGAGCTGGGGGTACCATGTGCTGCTTGCCCCCAAGGACAAATACCCCGAGTACCAGCAACAAATTGTC GAAGAGGGCGAGGGCCGCTACGGCGAGGCCCACAGCGAGCAGGAAACCCGACGGCTTATCGACGGCTTCGACGAC GGAGAGACTGAAGACGACGACGAGCGCCATAGTGTCGACTCTCGCACGTATGTGCCTGACGGCCAGACCCCGCTT GCCGGCACCTCGAGGACTTCGGCCGACTCGAGCGACGACGAGTCCGCACCCAAGAAGCTGCAGCATCCCAAGTGC GCCCCTCGAGCCGAAATTGCTCCCAGGAGCGTGCCCCATACTCTGGCCTTTCCCCGGGTCGGCAGCAGCGGCGAC CGCAGCCCGCCTCGCACCAGGTCCGACGGCATCTGGGCTTCGCACAAGGCGTCGGCCGCCAACGGGTTTCGTTCT CTGCAAGCCAGGACATCTCGCTGCCTGGATAGCCTCGGCAAGAGGATACCGGACCCGGTCCGTGTACTCCTGTCA GTCCTGAGGACGGCCTCGAGAAAGACGGCGTATTTCATCTGGGAGTTTATGAACCCGCCGCTGTGGGCGATGCTC ATTGCCGTCACGGTTGCGTCGATTCCTGCGCTTCAGAAGCTCTTCTTCGAGGAGGAATCGTTCATCAACAACAGC GTGACGAGTGCCGTCAAGTCGAGCGGCGGCGTTGCCGTTCCCCTGATCCTGGTCGTTCTGGGCGCCAACCTTGCG AGAAACACGATGGCGCGGGACGACAGCCACGACCCCGAAGAGGAGCAGGTCGGAACCAAGCTCCTGGTGGCGGCC TTGTTGAGCCGGATGGTCCTACCGACCGTCATCATGGCTCCGATCCTGGCTCTCATGGCAAAGTACTTGCCCGTC AGCATTCTTGACGATCCCATCTTCATCGTCGTCTGCTTCCTACTGACCGGTGCCCCGAGCGCGTTGCAGCTGGCT CAGATCTGCCAGATCAACGCCGTGTACGAGAAGACGATGGGCCGGGTGCTCTTCCAGAGCTACGTCATATGGATT CTACCTTCCACGTTGATCCTTGTCATGATGGCTCTCGAAGTTGTACAGTGGGCGGCTGCGCCATGA |
| Gene | >Ophio5|6452 ATGCCTGCGCCCTCCATCTCACCATCGCTGCGCGATAAGGATATTTTGCGTGCCTCCCGTCCCGCTTTGCCCATT TTCCCTCTCCTCCCACCTCACATCAAGCGCCTCTCACCCCCTCGTAGAGAATACGGCCTTGGCGCTGCGCGCTAT TGTCTCCTCGTCTGCGGCCGATGACGCATTGAGACTGTCCGTTCGCGCGCCAGCCGCCACCCGTTCCGTCCTTTT AAGCTTATCCCCCGAATAACACAGTCGCCTCCTCCGGATCAACCGACACGGTCAACAAACGTCACTTTCTAACAC GCTTCGCGGACCTGGACGCCGCGAAGTCGAGGCTCACGATGGAATCTGCCAATTCCTTCGCCGGGCCCGTCTCAT ACCGTCTGGCCCACGTTGCCCGGAATGCCTACGACTACCCGATGGCCGTCCTCCAAGGACAGCCGACGGGCCACC CCTCGCTACCTCACCTGTGTCTCCTCGTCTTCGAAGCCGTCCTCGAGGTCGTCTGCGTCAGTCTTCCGGGCTACA TCATCGCCCGGCTTGGCCACTTTGATGCAGACAAGCAGAAATTTCTGGCCAACCTCAATGTCATGTTGTTTACCC CATGCCTGAGTAAGGTCTCTTTGCCATCCCCGTCGTCCCACCGTCGCTGACCCATGCCTCGACAGTCTTTACGAA ACTGGCATCCCAACTAAACGCCGAGAAGCTGACCGAGCTCGCCATTATCCCCGCCATCTTTGTCCTCCAGACCGT GATATCGTGGATTGTCTCCACCCTGATGGCCAGGGCCTTTCGATTCAACCGACGAGCCTCCAACTTCGTCACTGC CATGGGTGTCTTCGGCAACTCGAATTCTCTACCCATCTCTCTCGTCCTCTCCCTTTCACAGACCATCAAGGGGCT CCACTGGGATCGCATTGCAGGGGATAACGACGATGAAGTCGCCGCCCGAGGCATCCTCTATCTCCTCATATTTCA GCAACTTGGCCAGCTGGTCCGATGGAGCTGGGGGTACCATGTGCTGCTTGCCCCCAAGGACAAATACCCCGAGTA CCAGCAACAAATTGTCGAAGAGGGCGAGGGCCGCTACGGCGAGGCCCACAGCGAGCAGGAAACCCGACGGCTTAT CGACGGCTTCGACGACGGAGAGACTGAAGACGACGACGAGCGCCATAGTGTCGACTCTCGCACGTATGTGCCTGA CGGCCAGACCCCGCTTGCCGGCACCTCGAGGACTTCGGCCGACTCGAGCGACGACGAGTCCGCACCCAAGAAGCT GCAGCATCCCAAGTGCGCCCCTCGAGCCGAAATTGCTCCCAGGAGCGTGCCCCATACTCTGGCCTTTCCCCGGGT CGGCAGCAGCGGCGACCGCAGCCCGCCTCGCACCAGGTCCGACGGCATCTGGGCTTCGCACAAGGCGTCGGCCGC CAACGGGTTTCGTTCTCTGCAAGCCAGGACATCTCGCTGCCTGGATAGCCTCGGCAAGAGGATACCGGACCCGGT CCGTGTACTCCTGTCAGTCCTGAGGACGGCCTCGAGAAAGACGGCGTATTTCATCTGGGAGTTTATGAACCCGCC GCTGTGGGCGATGCTCATTGCCGTCACGGTTGCGTCGATTCCTGCGCTTCAGAAGCTCTTCTTCGAGGAGGAATC GTTCATCAACAACAGCGTGACGAGTGCCGTCAAGTCGAGCGGCGGCGTTGCCGTTCCCCTGATCCTGGTCGTTCT GGGCGCCAACCTTGCGAGAAACACGATGGCGCGGGACGACAGCCACGACCCCGAAGAGGAGCAGGTCGGAACCAA GCTCCTGGTGGCGGCCTTGTTGAGCCGGATGGTCCTACCGACCGTCATCATGGCTCCGATCCTGGCTCTCATGGC AAAGTACTTGCCCGTCAGCATTCTTGACGATCCCATCTTCATCGTCGTCTGCTTCCTACTGACCGGTGCCCCGAG CGCGTTGCAGCTGGCTCAGATCTGCCAGATCAACGCCGTGTACGAGAAGACGATGGGCCGGGTGCTCTTCCAGAG CTACGTCATATGGTGCGTTCCTCCCCGCTGGCCGTGTGCTGAAGATGGCTAACGAGCGCAACATGGCAGGATTCT ACCTTCCACGTTGATCCTTGTCATGATGGCTCTCGAAGTTGTACAGTGGGCGGCTGCGCCATGA |