© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|6447 |
| Gene name | |
| Location | scaffold_564:5206..5787 |
| Strand | + |
| Gene length (bp) | 581 |
| Transcript length (bp) | 468 |
| Coding sequence length (bp) | 465 |
| Protein length (aa) | 155 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08552 | Kei1 | Inositolphosphorylceramide synthase subunit Kei1 | 2.5E-43 | 16 | 121 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13994|KEI1_SCHPO | Inositol phoshorylceramide synthase regulatory subunit kei1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kei1 PE=3 SV=1 | 15 | 130 | 1.0E-11 |
| sp|Q06346|KEI1_YEAST | Inositol phosphorylceramide synthase regulatory subunit KEI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KEI1 PE=1 SV=2 | 14 | 113 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006673 | inositol phosphoceramide metabolic process | Yes |
| GO:0070917 | inositol phosphoceramide synthase regulator activity | Yes |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0006796 | phosphate-containing compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006644 | phospholipid metabolic process | No |
| GO:0006665 | sphingolipid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006793 | phosphorus metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0098772 | molecular function regulator activity | No |
| GO:0030234 | enzyme regulator activity | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0019637 | organophosphate metabolic process | No |
| GO:0006643 | membrane lipid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 54 | 76 | 22 |
| 2 | 88 | 110 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 140.65 | 71.46 | 209.84 |
| CcL | In ants, during behavior modification | 41.74 | 11.66 | 71.83 |
| CcD | In ants, recently dead | 49.80 | 19.72 | 79.87 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000535 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.637332 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6447 MTRLTRLLLRIPRPQSLFGVISLQTGTELIALAQVFNKVTGVYGLLAILTGYKLSVLQLSTYIYSIAVLAVVVYL IPHIRRQSPFECLALAWVYLLDTVINGVYTVAFGLELYLASITVSDIESPPSSSLSSIVAKGLSGLRRESEAPVK ASILQ |
| Coding | >Ophio5|6447 ATGACAAGATTAACGAGGCTGCTTCTTCGGATACCCCGCCCGCAGAGCCTATTTGGCGTCATCAGCCTCCAGACA GGCACTGAGCTCATCGCGCTGGCCCAGGTCTTTAACAAGGTCACCGGGGTGTACGGCTTGCTCGCCATTCTCACG GGCTACAAGTTGTCGGTGCTGCAGCTGTCGACATATATCTACTCCATCGCCGTTCTCGCCGTCGTCGTCTACCTG ATCCCGCACATCCGACGGCAAAGCCCGTTTGAGTGTCTCGCCCTGGCTTGGGTGTACCTCCTCGACACGGTCATC AATGGAGTCTATACGGTCGCCTTCGGGCTCGAGCTGTATTTAGCCAGCATCACGGTCAGCGACATAGAGTCGCCG CCGTCCTCGTCGCTCTCCAGCATCGTCGCCAAGGGTTTGAGCGGATTGCGGCGAGAGAGCGAGGCCCCAGTCAAG GCGAGTATACTTCAG |
| Transcript | >Ophio5|6447 ATGACAAGATTAACGAGGCTGCTTCTTCGGATACCCCGCCCGCAGAGCCTATTTGGCGTCATCAGCCTCCAGACA GGCACTGAGCTCATCGCGCTGGCCCAGGTCTTTAACAAGGTCACCGGGGTGTACGGCTTGCTCGCCATTCTCACG GGCTACAAGTTGTCGGTGCTGCAGCTGTCGACATATATCTACTCCATCGCCGTTCTCGCCGTCGTCGTCTACCTG ATCCCGCACATCCGACGGCAAAGCCCGTTTGAGTGTCTCGCCCTGGCTTGGGTGTACCTCCTCGACACGGTCATC AATGGAGTCTATACGGTCGCCTTCGGGCTCGAGCTGTATTTAGCCAGCATCACGGTCAGCGACATAGAGTCGCCG CCGTCCTCGTCGCTCTCCAGCATCGTCGCCAAGGGTTTGAGCGGATTGCGGCGAGAGAGCGAGGCCCCAGTCAAG GCGAGTATACTTCAGTAA |
| Gene | >Ophio5|6447 ATGACAAGATTAACGAGGCTGCTTCTTCGGATACCCCGCCCGCAGGTCCGCAGACCCGCATGATGCAGGATGCAG AGAGTTCGCTGACGCAGTGGACAGAGCCTATTTGGCGTCATCAGCCTCCAGACAGGCACTGAGCTCATCGCGCTG GCCCAGGTCTTTAACAAGGTCACCGGGGTGTACGGCTTGCTCGCCATTCTCACGGGCTACAAGTTGTCGGTGCTG CAGCTGTCGACATATATCTACTCCATCGCCGTTCTCGCCGTCGTCGTCTACCTGATCCCGCACATCCGACGGCAA AGCCCGTTTGAGTGTCTCGCCCTGGCTTGGGTGTACCTCCTCGACACGGTCATCAATGGAGTCTATACGGTCGCC TTCGGGCTCGAGCTGTATTTAGCCAGCATCACGGTCAGCGACATAGAGTCGCCGCCGTCCTCGTCGCTCTCCAGC ATCGTCGCCAAGGGTTTGAGCGGATTGCGGCGAGAGAGCGAGGCCCCAGTCAAGGCGGTGGTTCCCCAGGAGACG GCGACGAGCATGCTCCTGATTGTGGGACTGACGCTTCTCAGAGTATACTTCAGTAA |