Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6423
Gene name
Locationscaffold_56:51749..52615
Strand+
Gene length (bp)866
Transcript length (bp)666
Coding sequence length (bp)663
Protein length (aa) 221

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07960 CBP4 CBP4 8.5E-28 107 211

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7SDU5|CBP4_NEUCR Assembly factor cbp-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cbp-4 PE=3 SV=1 106 218 2.0E-36
sp|A4RC22|CBP4_MAGO7 Assembly factor CBP4 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CBP4 PE=3 SV=1 107 218 5.0E-33
sp|Q2H4Y0|CBP4_CHAGB Assembly factor CBP4 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=CBP4 PE=3 SV=2 106 218 3.0E-32
sp|A6R620|CBP4_AJECN Assembly factor CBP4 OS=Ajellomyces capsulatus (strain NAm1 / WU24) GN=CBP4 PE=3 SV=1 103 220 3.0E-28
sp|Q2UE23|CBP4_ASPOR Assembly factor cbp4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cbp4 PE=3 SV=2 111 221 2.0E-27
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Swissprot ID Swissprot Description Start End E-value
sp|Q7SDU5|CBP4_NEUCR Assembly factor cbp-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cbp-4 PE=3 SV=1 106 218 2.0E-36
sp|A4RC22|CBP4_MAGO7 Assembly factor CBP4 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CBP4 PE=3 SV=1 107 218 5.0E-33
sp|Q2H4Y0|CBP4_CHAGB Assembly factor CBP4 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=CBP4 PE=3 SV=2 106 218 3.0E-32
sp|A6R620|CBP4_AJECN Assembly factor CBP4 OS=Ajellomyces capsulatus (strain NAm1 / WU24) GN=CBP4 PE=3 SV=1 103 220 3.0E-28
sp|Q2UE23|CBP4_ASPOR Assembly factor cbp4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cbp4 PE=3 SV=2 111 221 2.0E-27
sp|A1DLB6|CBP4_NEOFI Assembly factor cbp4 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=cbp4 PE=3 SV=1 111 221 4.0E-27
sp|A1CMM2|CBP4_ASPCL Assembly factor cbp4 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=cbp4 PE=3 SV=1 103 221 2.0E-26
sp|Q0ULB7|CBP4_PHANO Assembly factor CBP4 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=CBP4 PE=3 SV=2 111 214 3.0E-26
sp|A7EJE5|CBP4_SCLS1 Assembly factor cbp4 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=cbp4 PE=3 SV=1 101 214 6.0E-26
sp|A2R065|CBP4_ASPNC Assembly factor cbp4 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=cbp4 PE=3 SV=2 111 221 2.0E-25
sp|A6SAY2|CBP4_BOTFB Assembly factor cbp4 OS=Botryotinia fuckeliana (strain B05.10) GN=cbp4 PE=3 SV=1 101 214 3.0E-25
sp|Q1DHX9|CBP4_COCIM Assembly factor CBP4 OS=Coccidioides immitis (strain RS) GN=CBP4 PE=3 SV=1 111 196 6.0E-25
sp|Q0CGN5|CBP4_ASPTN Assembly factor cbp4 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=cbp4 PE=3 SV=1 111 221 8.0E-25
sp|Q5ASG4|CBP4_EMENI Assembly factor cbp4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cbp4 PE=3 SV=1 111 215 2.0E-22
sp|Q6C5S0|CBP4_YARLI Assembly factor CBP4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CBP4 PE=3 SV=1 116 180 5.0E-08
sp|A3LQD9|CBP4_PICST Assembly factor CBP4 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=CBP4 PE=3 SV=1 108 180 8.0E-08
sp|Q6FVS6|CBP4_CANGA Assembly factor CBP4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CBP4 PE=3 SV=1 108 180 3.0E-07
sp|A5DM93|CBP4_PICGU Assembly factor CBP4 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=CBP4 PE=3 SV=2 108 180 4.0E-07
sp|Q6BI17|CBP4_DEBHA Assembly factor CBP4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CBP4 PE=3 SV=2 108 180 6.0E-07
sp|A7TFK6|CBP4_VANPO Assembly factor CBP4 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=CBP4 PE=3 SV=1 108 180 2.0E-06
sp|A5DTG8|CBP4_LODEL Assembly factor CBP4 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=CBP4 PE=3 SV=1 108 180 4.0E-06
sp|P37267|CBP4_YEAST Assembly factor CBP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CBP4 PE=1 SV=3 103 180 9.0E-06
sp|C8Z970|CBP4_YEAS8 Assembly factor CBP4 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=CBP4 PE=3 SV=2 103 180 9.0E-06
sp|A6ZUI6|CBP4_YEAS7 Assembly factor CBP4 OS=Saccharomyces cerevisiae (strain YJM789) GN=CBP4 PE=3 SV=2 103 180 9.0E-06
sp|C7GT24|CBP4_YEAS2 Assembly factor CBP4 OS=Saccharomyces cerevisiae (strain JAY291) GN=CBP4 PE=3 SV=2 103 180 9.0E-06
sp|B3LI56|CBP4_YEAS1 Assembly factor CBP4 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=CBP4 PE=3 SV=2 103 180 9.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 103.33 54.68 151.99
CcL In ants, during behavior modification 93.61 46.94 140.28
CcD In ants, recently dead 70.89 34.97 106.82

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.728386 no
SC16a CcD 0.122972 no
CcL CcD 0.290530 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6423
MTALVRRHVFVTSNELESPSFVEGGPSKEVGWDVGSRFTAFLNCILPICDRKTANDATPQAFASADDHRLIFVFP
PPPPFPPPISEFSLPSLDEARCARRLPMARINWSLWAKVLIGGTLVSVGGPALTMYLTPTEEELRSRYNPDLRKK
SLETREERQQEFNDFVTQLKTHSKSDKPIWIAMKEDEQRRKQAALEAGRTQQREADACRDEMRREAGLGSK
Coding >Ophio5|6423
ATGACGGCCCTCGTACGTCGTCACGTCTTCGTAACGAGCAACGAGTTGGAGTCTCCGTCATTCGTCGAGGGAGGC
CCAAGCAAAGAAGTCGGATGGGATGTCGGATCCCGGTTCACCGCCTTCCTCAATTGTATTCTGCCGATATGCGAT
CGAAAGACTGCCAATGACGCAACTCCTCAAGCCTTTGCATCTGCAGACGATCATCGCCTCATCTTTGTGTTCCCC
CCCCCCCCCCCCTTTCCCCCTCCTATCTCTGAATTCTCTTTGCCATCGCTGGACGAGGCGCGGTGCGCACGACGC
CTGCCAATGGCGCGCATCAACTGGAGCCTCTGGGCCAAGGTGCTGATCGGCGGAACCTTGGTCAGTGTAGGCGGT
CCAGCGCTGACCATGTACCTCACTCCGACGGAAGAGGAGCTTCGGTCGCGGTATAACCCGGACCTGCGCAAGAAG
AGCCTCGAGACGAGAGAGGAACGACAGCAGGAGTTTAATGACTTCGTCACCCAGTTGAAGACTCACTCCAAGTCG
GATAAGCCGATCTGGATCGCCATGAAGGAGGACGAGCAGCGACGCAAACAGGCGGCATTGGAGGCGGGCAGGACG
CAACAGCGCGAGGCGGATGCGTGCCGTGACGAGATGCGGCGCGAGGCAGGTCTGGGGTCAAAG
Transcript >Ophio5|6423
ATGACGGCCCTCGTACGTCGTCACGTCTTCGTAACGAGCAACGAGTTGGAGTCTCCGTCATTCGTCGAGGGAGGC
CCAAGCAAAGAAGTCGGATGGGATGTCGGATCCCGGTTCACCGCCTTCCTCAATTGTATTCTGCCGATATGCGAT
CGAAAGACTGCCAATGACGCAACTCCTCAAGCCTTTGCATCTGCAGACGATCATCGCCTCATCTTTGTGTTCCCC
CCCCCCCCCCCCTTTCCCCCTCCTATCTCTGAATTCTCTTTGCCATCGCTGGACGAGGCGCGGTGCGCACGACGC
CTGCCAATGGCGCGCATCAACTGGAGCCTCTGGGCCAAGGTGCTGATCGGCGGAACCTTGGTCAGTGTAGGCGGT
CCAGCGCTGACCATGTACCTCACTCCGACGGAAGAGGAGCTTCGGTCGCGGTATAACCCGGACCTGCGCAAGAAG
AGCCTCGAGACGAGAGAGGAACGACAGCAGGAGTTTAATGACTTCGTCACCCAGTTGAAGACTCACTCCAAGTCG
GATAAGCCGATCTGGATCGCCATGAAGGAGGACGAGCAGCGACGCAAACAGGCGGCATTGGAGGCGGGCAGGACG
CAACAGCGCGAGGCGGATGCGTGCCGTGACGAGATGCGGCGCGAGGCAGGTCTGGGGTCAAAGTAA
Gene >Ophio5|6423
ATGACGGCCCTCGTGTCTTTCACTCTTTTTTGGGGGGGGCTGCTGCCGATTTGTGTTCTCTTCGTGACGAATTAA
AGACGTCGTCACGTCTTCGTAACGAGCAACGAGTTGGAGTCTCCGTCATTCGTCGAGGGAGGCCCAAGCAAAGAA
GTCGGATGGGATGTCGGATCCCGGTTCACCGCCTTCCTCAATTGTATTCTGCCGATATGCGATCGAAAGACTGCC
AATGACGCAACTCCTCAAGCCTTTGCATCTGCAGACGATCATCGCCTCATCTTTGTGTTCCCCCCCCCCCCCCCC
TTTCCCCCTCCTATCTCTGAATTCTCTTTGCCATCGCTGGACGAGGCGCGGTGCGCACGACGCCTGCCAATGGCG
CGCATCAACTGGAGCCTCTGGGCCAAGGTGCTGATCGGGTACGCCGGAATCCAATCATTGCCTCTGGACAGCAGC
CAGGCCTGACAACAAAGACCGCAACAGCGGAACCTTGGTCAGTGTAGGCGGTCCAGCGCTGACCATGTACCTCAC
TCCGACGGAAGAGGAGCTTCGGTCGCGGTATAACCCGGACCTGCGCAAGAAGAGCCTCGAGACGAGAGAGGAACG
ACAGCAGGAGTTTAATGACTTCGTCACCCAGTTGAAGACTCACTCCAAGTCGGATAAGCCGAGTCCGTTTATAAA
ATTAAACCCCCCCTTTCCCCCTGCTTGTATAAGAAGAGCTCGAGAGCTGACTAGTCTTAGTCTGGATCGCCATGA
AGGAGGACGAGCAGCGACGCAAACAGGCGGCATTGGAGGCGGGCAGGACGCAACAGCGCGAGGCGGATGCGTGCC
GTGACGAGATGCGGCGCGAGGCAGGTCTGGGGTCAAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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