Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6379
Gene name
Locationscaffold_555:11689..12919
Strand-
Gene length (bp)1230
Transcript length (bp)786
Coding sequence length (bp)783
Protein length (aa) 261

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01699 Na_Ca_ex Sodium/calcium exchanger protein 4.2E-07 183 247

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q99385|VCX1_YEAST Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 151 248 1.0E-19
sp|O59768|VCX1_SCHPO Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 153 261 1.0E-19
sp|Q5KQN0|CAX2_ORYSJ Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2 157 249 1.0E-17
sp|Q769E5|CAX1A_ORYSJ Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1 152 249 2.0E-17
sp|Q39254|CAX2_ARATH Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 120 249 2.0E-17
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Swissprot ID Swissprot Description Start End E-value
sp|Q99385|VCX1_YEAST Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VCX1 PE=1 SV=1 151 248 1.0E-19
sp|O59768|VCX1_SCHPO Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vcx1 PE=3 SV=1 153 261 1.0E-19
sp|Q5KQN0|CAX2_ORYSJ Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2 157 249 1.0E-17
sp|Q769E5|CAX1A_ORYSJ Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1 152 249 2.0E-17
sp|Q39254|CAX2_ARATH Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2 120 249 2.0E-17
sp|Q8L783|CAX5_ARATH Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1 122 249 4.0E-17
sp|Q5TKG3|CAX1B_ORYSJ Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1 182 249 1.0E-16
sp|Q9LFZ8|CAX6_ARATH Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3 126 249 8.0E-16
sp|Q93Z81|CAX3_ARATH Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1 135 249 5.0E-15
sp|Q6K1C4|CAX3_ORYSJ Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2 157 249 8.0E-15
sp|Q39253|CAX1_ARATH Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3 150 249 3.0E-14
sp|Q945S5|CAX4_ARATH Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2 101 249 7.0E-14
sp|Q75XW3|CAX_APHHA Ca(2+)/H(+) antiporter OS=Aphanothece halophytica PE=1 SV=1 182 248 4.0E-13
sp|P74072|CAX_SYNY3 Ca(2+)/H(+) antiporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1336 PE=1 SV=1 163 248 4.0E-12
sp|Q5KTQ9|CAX1C_ORYSJ Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1 151 249 1.0E-09
sp|O34840|CHAA_BACSU Ca(2+)/H(+) antiporter ChaA OS=Bacillus subtilis (strain 168) GN=chaA PE=1 SV=1 161 248 3.0E-09
sp|Q6YXZ1|CAX4_ORYSJ Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1 148 249 8.0E-09
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0055085 transmembrane transport Yes
GO:0009987 cellular process No
GO:0051234 establishment of localization No
GO:0006810 transport No
GO:0110165 cellular anatomical entity No
GO:0031224 intrinsic component of membrane No
GO:0005575 cellular_component No
GO:0051179 localization No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 35 0.45

Transmembrane Domains

Domain # Start End Length
1 156 178 22
2 183 202 19
3 215 237 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6379
MSLNHFRNKRQAHAVSRASSDQAWNPFRHVWGGRRAQTWAGLETQEGRAGVVHSATEPTTATTRVEPEHVQSTTA
RLASADENVDVKTPELESGLRHRKPVDDGGGGDAEADAATPVPVQGKPAEEEKQTNKHSRFLRHLEPKTPFTVSN
QLQRTFLNSWINMLLVAAPVGIALNYVPAVPRVAVFVVNFVAIIPLAAMLSFATEEIALRTGETLGGLLNATFGN
AVEVIVSIIALIDGKIQIVKTSLIVLFVATRCEQST
Coding >Ophio5|6379
ATGTCGCTCAACCACTTTCGTAACAAGCGCCAAGCCCACGCCGTCAGCCGAGCCAGTTCTGACCAAGCGTGGAAT
CCTTTCCGACACGTTTGGGGCGGACGCCGGGCTCAGACTTGGGCTGGTTTGGAGACGCAAGAGGGTCGAGCTGGA
GTTGTGCATTCGGCTACGGAACCGACGACAGCGACGACAAGAGTTGAACCCGAGCATGTGCAGTCGACGACGGCT
CGGCTAGCTTCGGCGGACGAAAATGTCGACGTCAAAACTCCCGAGCTGGAGTCTGGGTTGCGGCACAGGAAGCCG
GTTGACGACGGTGGAGGAGGAGACGCAGAAGCGGATGCTGCAACGCCCGTCCCCGTCCAAGGAAAGCCGGCAGAG
GAGGAGAAGCAGACGAACAAGCACAGCCGCTTCCTTCGCCACCTCGAGCCCAAGACCCCCTTCACCGTCTCCAAC
CAGCTACAGAGAACCTTTCTCAACTCGTGGATCAACATGCTTCTCGTCGCCGCCCCTGTCGGCATCGCCCTCAAC
TACGTGCCGGCCGTGCCCAGAGTGGCCGTCTTCGTCGTCAACTTTGTCGCCATCATCCCGCTGGCCGCCATGCTG
AGCTTCGCGACCGAGGAGATTGCCTTGCGGACGGGCGAGACGTTGGGCGGCTTGTTGAATGCCACTTTTGGGAAT
GCGGTTGAGGTCATCGTCAGCATCATTGCTCTCATCGATGGCAAGATTCAGATTGTCAAGACCTCGCTTATTGTC
CTCTTCGTCGCAACTCGCTGTGAGCAGTCTACG
Transcript >Ophio5|6379
ATGTCGCTCAACCACTTTCGTAACAAGCGCCAAGCCCACGCCGTCAGCCGAGCCAGTTCTGACCAAGCGTGGAAT
CCTTTCCGACACGTTTGGGGCGGACGCCGGGCTCAGACTTGGGCTGGTTTGGAGACGCAAGAGGGTCGAGCTGGA
GTTGTGCATTCGGCTACGGAACCGACGACAGCGACGACAAGAGTTGAACCCGAGCATGTGCAGTCGACGACGGCT
CGGCTAGCTTCGGCGGACGAAAATGTCGACGTCAAAACTCCCGAGCTGGAGTCTGGGTTGCGGCACAGGAAGCCG
GTTGACGACGGTGGAGGAGGAGACGCAGAAGCGGATGCTGCAACGCCCGTCCCCGTCCAAGGAAAGCCGGCAGAG
GAGGAGAAGCAGACGAACAAGCACAGCCGCTTCCTTCGCCACCTCGAGCCCAAGACCCCCTTCACCGTCTCCAAC
CAGCTACAGAGAACCTTTCTCAACTCGTGGATCAACATGCTTCTCGTCGCCGCCCCTGTCGGCATCGCCCTCAAC
TACGTGCCGGCCGTGCCCAGAGTGGCCGTCTTCGTCGTCAACTTTGTCGCCATCATCCCGCTGGCCGCCATGCTG
AGCTTCGCGACCGAGGAGATTGCCTTGCGGACGGGCGAGACGTTGGGCGGCTTGTTGAATGCCACTTTTGGGAAT
GCGGTTGAGGTCATCGTCAGCATCATTGCTCTCATCGATGGCAAGATTCAGATTGTCAAGACCTCGCTTATTGTC
CTCTTCGTCGCAACTCGCTGTGAGCAGTCTACGTAA
Gene >Ophio5|6379
ATGTCGCGTGAGTTTTTATCTTCATTCTTCTTGCTATTCTTCTACTTGGATTCCCCCCCCCTTCTTGTTTTCTCT
ACTGCAAGTCTTGGTCCCTGTCGTATTCCTCTGGACGTGACGATGGAGGAAGCACAGCCTACCTTCATACCCTGT
GCGTTCTAACGCGTGCCTTTTTTTTTTTTTTCCTTTTTTTTTATCTCTCTCTTCCTTGTCATGAATCTATTCCCC
TCTCTTCCCCCCCCCCCCGCTCCTCTCTGTGAATCTCGTGTACTGACAAGACCATCATCATCCATGGGACGAGCA
GTCAACCACTTTCGTAACAAGCGCCAAGCCCACGCCGTCAGCCGAGCCAGTTCTGACCAAGCGTGGAATCCTTTC
CGACACGTTTGGGGCGGACGCCGGGCTCAGACTTGGGCTGGTTTGGAGACGCAAGAGGGTCGAGCTGGAGTTGTG
CATTCGGCTACGGAACCGACGACAGCGACGACAAGAGTTGAACCCGAGCATGTGCAGTCGACGACGGCTCGGCTA
GCTTCGGCGGACGAAAATGTCGACGTCAAAACTCCCGAGCTGGAGTCTGGGTTGCGGCACAGGAAGCCGGTTGAC
GACGGTGGAGGAGGAGACGCAGAAGCGGATGCTGCAACGCCCGTCCCCGTCCAAGGAAAGCCGGCAGAGGAGGAG
AAGCAGACGAACAAGCACAGCCGCTTCCTTCGCCACCTCGAGCCCAAGACCCCCTTCACCGTCTCCAACCAGCTA
CAGAGAACCTTTCTCAACTCGTGGATCAACATGCTTCTCGTCGCCGCCCCTGTCGGCATCGCCCTCAACTACGTG
CCGGCCGTGCCCAGAGTGGCCGTCTTCGTCGTCAACTTTGTCGCCATCATCCCGCTGGCCGCCATGCTGAGCTTC
GCGACCGAGGAGATTGCCTTGCGGACGGGCGAGACGTTGGGCGGCTTGTTGAATGCCACTTTTGGGAATGCGGTT
GAGGTCATCGTCAGCATCATTGCTCTCATCGATGGCAAGATTCAGATTGTCAAGACCTCGCTTATTGTCCGTCCT
CTCCTCCTCCTCCTCCCCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTTACATTGATGATGGATCTTCAGAGG
GGGAGATGCAATGGGCGTGATGAACCATCGGCCTGACACGGACGCAGAGTGGGTAGACAACTCTACACAGTCTTC
GTCGCAACTCGCTGTGAGCAGTCTACGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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