Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6377
Gene name
Locationscaffold_555:6408..7565
Strand+
Gene length (bp)1157
Transcript length (bp)1101
Coding sequence length (bp)1098
Protein length (aa) 366

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q12516|SRF1_YEAST Regulator of phospholipase D SRF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRF1 PE=1 SV=1 221 361 2.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 41 0.45

Transmembrane Domains

Domain # Start End Length
1 221 243 22
2 258 277 19
3 296 318 22
4 333 355 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6377
MASSSTAKQARDDGSEEPVSLRTDSITVDGTPLRLRPARSLPPWIDSYEERYGPPPDEQLRLLKPPDRIVYTQRN
ADPQEPQRRVSKDGFVEWDDPHLGPGKDPRAKIPHFLRYGRASMRGRKWDHLRTAEPVIISGNRPATSQPSPSWR
EFVRASSWGNMPNEDSEVVDYDVLKKMQPSFDGLGTVQQCQSDSKGSCRRKTLSFYKRLWVAMMRSSLSPLLFRL
TVVVTSVLALGIASRIFQREDSIDRDGAERTQSMFAVAVDCVAIPYIGYMIYDEYTGKPVGLRSGVSKIRLILLD
VFFIIFKSASTALAFESIVYHRIMEYQAWQLSTVLGVFELVGLMSWTMNFVVNVFRTVERLGGGAD
Coding >Ophio5|6377
ATGGCGTCTTCGTCTACGGCCAAGCAGGCTCGTGACGATGGATCCGAAGAGCCTGTCTCCCTCAGAACCGACAGC
ATCACAGTCGATGGAACCCCTTTACGACTGCGGCCTGCGCGGTCTCTGCCTCCCTGGATCGACTCGTACGAGGAG
CGCTATGGCCCTCCGCCCGACGAACAGCTCCGTCTTCTCAAACCTCCTGACCGCATCGTCTATACTCAGCGCAAC
GCAGACCCTCAAGAACCCCAGAGGCGCGTCTCCAAGGACGGTTTCGTCGAATGGGATGACCCTCATCTTGGGCCG
GGCAAGGACCCCCGCGCCAAGATTCCTCACTTTCTGCGCTACGGCCGGGCCTCGATGCGCGGCAGGAAATGGGAT
CATCTACGGACCGCAGAGCCCGTTATAATCAGTGGCAACCGCCCTGCGACTTCGCAACCTTCACCGTCGTGGAGA
GAATTCGTCCGTGCCTCTTCGTGGGGCAATATGCCCAACGAAGACTCCGAGGTGGTCGACTACGACGTCTTGAAA
AAGATGCAACCATCTTTCGATGGGCTTGGCACTGTGCAGCAATGCCAGTCCGACTCCAAGGGGTCGTGTCGGCGA
AAGACGCTGTCCTTTTACAAACGCCTTTGGGTCGCCATGATGCGAAGTTCGCTGTCTCCTCTCCTATTCCGGCTG
ACTGTCGTTGTCACCTCGGTTCTCGCCCTGGGCATCGCGTCGCGCATCTTTCAGCGCGAAGATTCCATCGACAGA
GACGGTGCCGAGCGAACGCAGTCCATGTTTGCAGTCGCTGTCGACTGCGTGGCCATTCCTTACATTGGCTACATG
ATCTATGACGAATACACAGGCAAGCCCGTCGGGCTTCGGTCTGGGGTGTCGAAAATACGGCTTATCCTGCTCGAC
GTCTTCTTCATCATCTTCAAGTCGGCCAGCACGGCACTGGCGTTTGAGAGCATTGTTTACCACCGCATCATGGAG
TATCAGGCCTGGCAACTGTCGACGGTGTTGGGCGTCTTTGAGCTTGTGGGGCTTATGTCGTGGACCATGAACTTT
GTCGTCAACGTCTTCCGGACTGTGGAACGTCTGGGAGGTGGTGCCGAC
Transcript >Ophio5|6377
ATGGCGTCTTCGTCTACGGCCAAGCAGGCTCGTGACGATGGATCCGAAGAGCCTGTCTCCCTCAGAACCGACAGC
ATCACAGTCGATGGAACCCCTTTACGACTGCGGCCTGCGCGGTCTCTGCCTCCCTGGATCGACTCGTACGAGGAG
CGCTATGGCCCTCCGCCCGACGAACAGCTCCGTCTTCTCAAACCTCCTGACCGCATCGTCTATACTCAGCGCAAC
GCAGACCCTCAAGAACCCCAGAGGCGCGTCTCCAAGGACGGTTTCGTCGAATGGGATGACCCTCATCTTGGGCCG
GGCAAGGACCCCCGCGCCAAGATTCCTCACTTTCTGCGCTACGGCCGGGCCTCGATGCGCGGCAGGAAATGGGAT
CATCTACGGACCGCAGAGCCCGTTATAATCAGTGGCAACCGCCCTGCGACTTCGCAACCTTCACCGTCGTGGAGA
GAATTCGTCCGTGCCTCTTCGTGGGGCAATATGCCCAACGAAGACTCCGAGGTGGTCGACTACGACGTCTTGAAA
AAGATGCAACCATCTTTCGATGGGCTTGGCACTGTGCAGCAATGCCAGTCCGACTCCAAGGGGTCGTGTCGGCGA
AAGACGCTGTCCTTTTACAAACGCCTTTGGGTCGCCATGATGCGAAGTTCGCTGTCTCCTCTCCTATTCCGGCTG
ACTGTCGTTGTCACCTCGGTTCTCGCCCTGGGCATCGCGTCGCGCATCTTTCAGCGCGAAGATTCCATCGACAGA
GACGGTGCCGAGCGAACGCAGTCCATGTTTGCAGTCGCTGTCGACTGCGTGGCCATTCCTTACATTGGCTACATG
ATCTATGACGAATACACAGGCAAGCCCGTCGGGCTTCGGTCTGGGGTGTCGAAAATACGGCTTATCCTGCTCGAC
GTCTTCTTCATCATCTTCAAGTCGGCCAGCACGGCACTGGCGTTTGAGAGCATTGTTTACCACCGCATCATGGAG
TATCAGGCCTGGCAACTGTCGACGGTGTTGGGCGTCTTTGAGCTTGTGGGGCTTATGTCGTGGACCATGAACTTT
GTCGTCAACGTCTTCCGGACTGTGGAACGTCTGGGAGGTGGTGCCGACTAG
Gene >Ophio5|6377
ATGGCGTCTTCGTCTACGGCCAAGCAGGCTCGTGACGATGGATCCGAAGAGCCTGTCTCCCTCAGAACCGACAGC
ATCACAGTCGATGGAACCCCTTTACGACTGCGGCCTGCGCGGTCTCTGCCTCGTACGCACTCGCGTCTTCTGTGC
CCTTGTTCACTCCGGGCTGACTTTGACCCGCAGCCTGGATCGACTCGTACGAGGAGCGCTATGGCCCTCCGCCCG
ACGAACAGCTCCGTCTTCTCAAACCTCCTGACCGCATCGTCTATACTCAGCGCAACGCAGACCCTCAAGAACCCC
AGAGGCGCGTCTCCAAGGACGGTTTCGTCGAATGGGATGACCCTCATCTTGGGCCGGGCAAGGACCCCCGCGCCA
AGATTCCTCACTTTCTGCGCTACGGCCGGGCCTCGATGCGCGGCAGGAAATGGGATCATCTACGGACCGCAGAGC
CCGTTATAATCAGTGGCAACCGCCCTGCGACTTCGCAACCTTCACCGTCGTGGAGAGAATTCGTCCGTGCCTCTT
CGTGGGGCAATATGCCCAACGAAGACTCCGAGGTGGTCGACTACGACGTCTTGAAAAAGATGCAACCATCTTTCG
ATGGGCTTGGCACTGTGCAGCAATGCCAGTCCGACTCCAAGGGGTCGTGTCGGCGAAAGACGCTGTCCTTTTACA
AACGCCTTTGGGTCGCCATGATGCGAAGTTCGCTGTCTCCTCTCCTATTCCGGCTGACTGTCGTTGTCACCTCGG
TTCTCGCCCTGGGCATCGCGTCGCGCATCTTTCAGCGCGAAGATTCCATCGACAGAGACGGTGCCGAGCGAACGC
AGTCCATGTTTGCAGTCGCTGTCGACTGCGTGGCCATTCCTTACATTGGCTACATGATCTATGACGAATACACAG
GCAAGCCCGTCGGGCTTCGGTCTGGGGTGTCGAAAATACGGCTTATCCTGCTCGACGTCTTCTTCATCATCTTCA
AGTCGGCCAGCACGGCACTGGCGTTTGAGAGCATTGTTTACCACCGCATCATGGAGTATCAGGCCTGGCAACTGT
CGACGGTGTTGGGCGTCTTTGAGCTTGTGGGGCTTATGTCGTGGACCATGAACTTTGTCGTCAACGTCTTCCGGA
CTGTGGAACGTCTGGGAGGTGGTGCCGACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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