© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6370 |
| Gene name | |
| Location | scaffold_554:23..1599 |
| Strand | + |
| Gene length (bp) | 1576 |
| Transcript length (bp) | 1506 |
| Coding sequence length (bp) | 1503 |
| Protein length (aa) | 501 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03372 | Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family | 3.2E-14 | 40 | 356 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74369|CSS1_SCHPO | Inositol phosphosphingolipids phospholipase C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=css1 PE=1 SV=2 | 36 | 490 | 4.0E-76 |
| sp|P40015|ISC1_YEAST | Inositol phosphosphingolipids phospholipase C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISC1 PE=1 SV=1 | 37 | 489 | 4.0E-60 |
| sp|Q9ET64|NSMA_RAT | Sphingomyelin phosphodiesterase 2 OS=Rattus norvegicus GN=Smpd2 PE=1 SV=1 | 37 | 234 | 2.0E-31 |
| sp|O60906|NSMA_HUMAN | Sphingomyelin phosphodiesterase 2 OS=Homo sapiens GN=SMPD2 PE=1 SV=2 | 37 | 221 | 7.0E-31 |
| sp|O70572|NSMA_MOUSE | Sphingomyelin phosphodiesterase 2 OS=Mus musculus GN=Smpd2 PE=1 SV=1 | 37 | 221 | 2.0E-30 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74369|CSS1_SCHPO | Inositol phosphosphingolipids phospholipase C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=css1 PE=1 SV=2 | 36 | 490 | 4.0E-76 |
| sp|P40015|ISC1_YEAST | Inositol phosphosphingolipids phospholipase C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISC1 PE=1 SV=1 | 37 | 489 | 4.0E-60 |
| sp|Q9ET64|NSMA_RAT | Sphingomyelin phosphodiesterase 2 OS=Rattus norvegicus GN=Smpd2 PE=1 SV=1 | 37 | 234 | 2.0E-31 |
| sp|O60906|NSMA_HUMAN | Sphingomyelin phosphodiesterase 2 OS=Homo sapiens GN=SMPD2 PE=1 SV=2 | 37 | 221 | 7.0E-31 |
| sp|O70572|NSMA_MOUSE | Sphingomyelin phosphodiesterase 2 OS=Mus musculus GN=Smpd2 PE=1 SV=1 | 37 | 221 | 2.0E-30 |
| sp|Q9VZS6|NSMA_DROME | Putative neutral sphingomyelinase OS=Drosophila melanogaster GN=CG12034 PE=2 SV=2 | 43 | 234 | 9.0E-29 |
| sp|O45870|NSMA_CAEEL | Putative neutral sphingomyelinase OS=Caenorhabditis elegans GN=T27F6.6 PE=3 SV=2 | 36 | 463 | 1.0E-25 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum|Golgi apparatus | Signal peptide|Transmembrane domain | 0.1557 | 0.3038 | 0.0313 | 0.1543 | 0.1191 | 0.0219 | 0.8627 | 0.406 | 0.7383 | 0.0081 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 421 | 443 | 22 |
| 2 | 448 | 470 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6414 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6370 MSRKDAAADVSSSMPDTEPRDDDDDDDDDGLLPPSELTLLTLNCWGLEHISSVRRQRLGEVGRRLARMRPRPQIV CLQECWVESDFQAIREATRHLLPHAKMYRAGVFGAGLVILSRWPFQDSSMLIFPLNGRPTAFWRGDWYVGKGVAC AVLRVGPAEGDVIHVFNTHTHAPYQKHHRDDSYACHRVAQAWEISKLLRTATATGRLVVALGDFNMLPLSLPHRI ITSRAPVRDLWRVLHPHSSLGPARHPAEAARNRPVPGARFNLEENGATSDGLYNTWRWTKNAQNRLRAGRTPCPV DPDAPDERGKRLDYIFASIGLTSPESASSSRRRWVVKSAAVTLTDPHPDLGVSLSDHFAVSATIRQHSAADGDDD DDDDDEKSRLENNTTTTTLPLSAYDEILSLVDAYTARERSQRRYRALHFYAALVVWAACLVAVWFAPGNFVCFLL ALVGSLVLAAGLIDGLLALLFFSSELRSLDEFAWEVRNARWAAAACPVKQK |
| Coding | >Ophio5|6370 ATGTCACGCAAAGACGCTGCAGCCGACGTGTCCTCCTCCATGCCGGACACGGAACCTCGCGACGACGACGACGAC GACGACGACGACGGCCTCCTCCCCCCGTCTGAACTGACGCTCCTGACGCTCAACTGCTGGGGCCTCGAGCACATC TCCTCCGTCCGGAGGCAAAGACTGGGCGAGGTGGGCCGGCGGCTGGCTCGGATGCGGCCACGGCCTCAGATCGTC TGCCTGCAGGAGTGCTGGGTGGAGAGCGATTTCCAGGCCATACGGGAGGCTACCCGTCACCTGTTGCCTCACGCC AAGATGTACCGCGCCGGCGTCTTCGGTGCCGGTCTCGTCATACTCAGTCGTTGGCCCTTTCAGGATTCCTCCATG CTCATCTTTCCCCTCAATGGCCGCCCTACCGCTTTTTGGAGGGGCGATTGGTATGTCGGCAAGGGCGTCGCCTGC GCTGTCTTGAGGGTTGGCCCGGCTGAGGGGGACGTCATTCACGTCTTTAACACGCATACTCATGCCCCTTACCAA AAACACCATCGCGACGACTCATACGCCTGCCACCGCGTCGCACAAGCATGGGAGATATCCAAGCTCCTCCGGACC GCCACGGCAACAGGCCGTCTCGTCGTCGCCCTCGGCGACTTCAACATGCTCCCTCTCTCGCTACCGCACCGCATC ATCACCTCCCGCGCCCCCGTTCGTGACCTCTGGCGCGTCCTCCACCCTCACAGCTCCCTCGGCCCGGCCCGCCAC CCCGCCGAGGCCGCTCGCAACCGACCCGTGCCCGGCGCCCGCTTTAACCTGGAGGAGAACGGGGCGACGAGCGAT GGCCTCTATAACACCTGGCGGTGGACCAAGAATGCCCAGAATAGGCTCCGCGCCGGCCGGACCCCTTGTCCCGTG GACCCCGACGCCCCCGATGAGCGCGGGAAGCGGCTCGACTACATCTTTGCCTCGATCGGCTTGACCTCCCCCGAG TCCGCCTCCTCCTCTCGCCGCCGCTGGGTCGTCAAGTCGGCCGCCGTCACCCTGACGGATCCGCATCCCGACCTC GGCGTCTCCCTATCCGACCACTTCGCCGTCAGCGCCACTATCCGCCAGCATTCCGCTGCCGACGGCGACGACGAC GACGACGACGACGACGAAAAAAGCCGGCTCGAAAACAACACTACCACCACCACCCTCCCCCTATCCGCCTACGAC GAAATCCTCTCCCTCGTCGACGCCTACACCGCCCGAGAGCGCTCCCAGCGCCGCTACCGCGCCCTGCATTTCTAT GCCGCCCTCGTCGTCTGGGCCGCGTGCCTCGTGGCCGTCTGGTTCGCCCCCGGTAACTTTGTCTGCTTCCTGCTC GCCCTCGTCGGCAGCCTGGTCCTGGCCGCTGGTCTGATTGATGGCCTGCTCGCCCTGCTCTTCTTCTCGTCCGAG CTGCGAAGCCTCGATGAATTCGCCTGGGAGGTTCGTAACGCGAGATGGGCCGCTGCTGCTTGTCCCGTGAAGCAG AAG |
| Transcript | >Ophio5|6370 ATGTCACGCAAAGACGCTGCAGCCGACGTGTCCTCCTCCATGCCGGACACGGAACCTCGCGACGACGACGACGAC GACGACGACGACGGCCTCCTCCCCCCGTCTGAACTGACGCTCCTGACGCTCAACTGCTGGGGCCTCGAGCACATC TCCTCCGTCCGGAGGCAAAGACTGGGCGAGGTGGGCCGGCGGCTGGCTCGGATGCGGCCACGGCCTCAGATCGTC TGCCTGCAGGAGTGCTGGGTGGAGAGCGATTTCCAGGCCATACGGGAGGCTACCCGTCACCTGTTGCCTCACGCC AAGATGTACCGCGCCGGCGTCTTCGGTGCCGGTCTCGTCATACTCAGTCGTTGGCCCTTTCAGGATTCCTCCATG CTCATCTTTCCCCTCAATGGCCGCCCTACCGCTTTTTGGAGGGGCGATTGGTATGTCGGCAAGGGCGTCGCCTGC GCTGTCTTGAGGGTTGGCCCGGCTGAGGGGGACGTCATTCACGTCTTTAACACGCATACTCATGCCCCTTACCAA AAACACCATCGCGACGACTCATACGCCTGCCACCGCGTCGCACAAGCATGGGAGATATCCAAGCTCCTCCGGACC GCCACGGCAACAGGCCGTCTCGTCGTCGCCCTCGGCGACTTCAACATGCTCCCTCTCTCGCTACCGCACCGCATC ATCACCTCCCGCGCCCCCGTTCGTGACCTCTGGCGCGTCCTCCACCCTCACAGCTCCCTCGGCCCGGCCCGCCAC CCCGCCGAGGCCGCTCGCAACCGACCCGTGCCCGGCGCCCGCTTTAACCTGGAGGAGAACGGGGCGACGAGCGAT GGCCTCTATAACACCTGGCGGTGGACCAAGAATGCCCAGAATAGGCTCCGCGCCGGCCGGACCCCTTGTCCCGTG GACCCCGACGCCCCCGATGAGCGCGGGAAGCGGCTCGACTACATCTTTGCCTCGATCGGCTTGACCTCCCCCGAG TCCGCCTCCTCCTCTCGCCGCCGCTGGGTCGTCAAGTCGGCCGCCGTCACCCTGACGGATCCGCATCCCGACCTC GGCGTCTCCCTATCCGACCACTTCGCCGTCAGCGCCACTATCCGCCAGCATTCCGCTGCCGACGGCGACGACGAC GACGACGACGACGACGAAAAAAGCCGGCTCGAAAACAACACTACCACCACCACCCTCCCCCTATCCGCCTACGAC GAAATCCTCTCCCTCGTCGACGCCTACACCGCCCGAGAGCGCTCCCAGCGCCGCTACCGCGCCCTGCATTTCTAT GCCGCCCTCGTCGTCTGGGCCGCGTGCCTCGTGGCCGTCTGGTTCGCCCCCGGTAACTTTGTCTGCTTCCTGCTC GCCCTCGTCGGCAGCCTGGTCCTGGCCGCTGGTCTGATTGATGGCCTGCTCGCCCTGCTCTTCTTCTCGTCCGAG CTGCGAAGCCTCGATGAATTCGCCTGGGAGGTTCGTAACGCGAGATGGGCCGCTGCTGCTTGTCCCGTGAAGCAG AAGTGA |
| Gene | >Ophio5|6370 ATGTCACGCAAAGACGCTGCAGCCGACGTGTCCTCCTCCATGCCGGACACGGAACCTCGCGACGACGACGACGAC GACGACGACGACGGCCTCCTCCCCCCGTCTGAACTGACGCTCCTGACGCTCAACTGCTGGGGCCTCGAGCACATC TCCTCCGTCCGGAGGCAAAGACTGGGCGAGGTGGGCCGGCGGCTGGCTCGGATGCGGCCACGGCCTCAGATCGTC TGCCTGCAGGAGTGCTGGGTGGAGAGCGATTTCCAGGCCATACGGGAGGCTACCCGTCACCTGTTGCCTCACGCC AAGATGTACCGCGCCGGCGTCTTCGGTGCCGGTCTCGTCATACTCAGTCGTTGGCCCTTTCAGGATTCCTCCATG CTCATCTTTCCCCTCAATGGCCGCCCTACCGCTTTTTGGAGGGGCGATTGGTATGTCGGCAAGGGCGTCGCCTGC GCTGTCTTGAGGGTTGGCCCGGCTGAGGGGGACGTCATTCACGTCTTTAACACGCATGTGAGCCTACGACTCTCC TCGCATGATATCGGCCAGCTTGTTGAATTCAAAACCCCCCCCCATCATTCAGACTCATGCCCCTTACCAAAAACA CCATCGCGACGACTCATACGCCTGCCACCGCGTCGCACAAGCATGGGAGATATCCAAGCTCCTCCGGACCGCCAC GGCAACAGGCCGTCTCGTCGTCGCCCTCGGCGACTTCAACATGCTCCCTCTCTCGCTACCGCACCGCATCATCAC CTCCCGCGCCCCCGTTCGTGACCTCTGGCGCGTCCTCCACCCTCACAGCTCCCTCGGCCCGGCCCGCCACCCCGC CGAGGCCGCTCGCAACCGACCCGTGCCCGGCGCCCGCTTTAACCTGGAGGAGAACGGGGCGACGAGCGATGGCCT CTATAACACCTGGCGGTGGACCAAGAATGCCCAGAATAGGCTCCGCGCCGGCCGGACCCCTTGTCCCGTGGACCC CGACGCCCCCGATGAGCGCGGGAAGCGGCTCGACTACATCTTTGCCTCGATCGGCTTGACCTCCCCCGAGTCCGC CTCCTCCTCTCGCCGCCGCTGGGTCGTCAAGTCGGCCGCCGTCACCCTGACGGATCCGCATCCCGACCTCGGCGT CTCCCTATCCGACCACTTCGCCGTCAGCGCCACTATCCGCCAGCATTCCGCTGCCGACGGCGACGACGACGACGA CGACGACGACGAAAAAAGCCGGCTCGAAAACAACACTACCACCACCACCCTCCCCCTATCCGCCTACGACGAAAT CCTCTCCCTCGTCGACGCCTACACCGCCCGAGAGCGCTCCCAGCGCCGCTACCGCGCCCTGCATTTCTATGCCGC CCTCGTCGTCTGGGCCGCGTGCCTCGTGGCCGTCTGGTTCGCCCCCGGTAACTTTGTCTGCTTCCTGCTCGCCCT CGTCGGCAGCCTGGTCCTGGCCGCTGGTCTGATTGATGGCCTGCTCGCCCTGCTCTTCTTCTCGTCCGAGCTGCG AAGCCTCGATGAATTCGCCTGGGAGGTTCGTAACGCGAGATGGGCCGCTGCTGCTTGTCCCGTGAAGCAGAAGTG A |