Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6348
Gene name
Locationscaffold_55:35044..36095
Strand+
Gene length (bp)1051
Transcript length (bp)939
Coding sequence length (bp)936
Protein length (aa) 312

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09335 SNARE_assoc SNARE associated Golgi protein 4.7E-15 59 173

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|A6RIB9|TVP38_BOTFB Golgi apparatus membrane protein tvp38 OS=Botryotinia fuckeliana (strain B05.10) GN=tvp38 PE=3 SV=1 1 289 4.0E-68
sp|A7EFY0|TVP38_SCLS1 Golgi apparatus membrane protein tvp38 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tvp38 PE=3 SV=1 1 289 2.0E-66
sp|Q2UUJ9|TVP38_ASPOR Golgi apparatus membrane protein tvp38 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=tvp38 PE=3 SV=2 23 274 1.0E-60
sp|Q5B7A1|TVP38_EMENI Golgi apparatus membrane protein tvp38 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tvp38 PE=3 SV=1 23 239 3.0E-60
sp|A1CW44|TVP38_NEOFI Golgi apparatus membrane protein tvp38 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tvp38 PE=3 SV=1 23 245 6.0E-59
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Swissprot ID Swissprot Description Start End E-value
sp|A6RIB9|TVP38_BOTFB Golgi apparatus membrane protein tvp38 OS=Botryotinia fuckeliana (strain B05.10) GN=tvp38 PE=3 SV=1 1 289 4.0E-68
sp|A7EFY0|TVP38_SCLS1 Golgi apparatus membrane protein tvp38 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tvp38 PE=3 SV=1 1 289 2.0E-66
sp|Q2UUJ9|TVP38_ASPOR Golgi apparatus membrane protein tvp38 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=tvp38 PE=3 SV=2 23 274 1.0E-60
sp|Q5B7A1|TVP38_EMENI Golgi apparatus membrane protein tvp38 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=tvp38 PE=3 SV=1 23 239 3.0E-60
sp|A1CW44|TVP38_NEOFI Golgi apparatus membrane protein tvp38 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tvp38 PE=3 SV=1 23 245 6.0E-59
sp|A1CIM4|TVP38_ASPCL Golgi apparatus membrane protein tvp38 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=tvp38 PE=3 SV=1 5 245 1.0E-58
sp|B0Y4Q5|TVP38_ASPFC Golgi apparatus membrane protein tvp38 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=tvp38 PE=3 SV=1 23 245 9.0E-58
sp|Q4WQJ2|TVP38_ASPFU Golgi apparatus membrane protein tvp38 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=tvp38 PE=3 SV=1 23 237 2.0E-57
sp|A2Q9P2|TVP38_ASPNC Golgi apparatus membrane protein tvp38 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tvp38 PE=3 SV=2 23 274 4.0E-56
sp|Q0CT01|TVP38_ASPTN Golgi apparatus membrane protein tvp38 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tvp38 PE=3 SV=1 23 241 5.0E-55
sp|A5DH87|TVP38_PICGU Golgi apparatus membrane protein TVP38 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=TVP38 PE=3 SV=2 1 302 3.0E-46
sp|Q6BQJ1|TVP38_DEBHA Golgi apparatus membrane protein TVP38 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TVP38 PE=3 SV=1 33 227 1.0E-36
sp|A7TMU9|TVP38_VANPO Golgi apparatus membrane protein TVP38 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TVP38 PE=3 SV=1 6 225 1.0E-31
sp|Q6FTI0|TVP38_CANGA Golgi apparatus membrane protein TVP38 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TVP38 PE=3 SV=1 1 230 3.0E-31
sp|P36164|TVP38_YEAST Golgi apparatus membrane protein TVP38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TVP38 PE=1 SV=1 34 186 5.0E-27
sp|A7A047|TVP38_YEAS7 Golgi apparatus membrane protein TVP38 OS=Saccharomyces cerevisiae (strain YJM789) GN=TVP38 PE=3 SV=1 34 186 5.0E-27
sp|Q759P7|TVP38_ASHGO Golgi apparatus membrane protein TVP38 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TVP38 PE=3 SV=1 51 226 2.0E-26
sp|Q6CXJ8|TVP38_KLULA Golgi apparatus membrane protein TVP38 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TVP38 PE=3 SV=1 42 225 4.0E-24
sp|A8NX72|TVP38_COPC7 Golgi apparatus membrane protein TVP38 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=TVP38 PE=3 SV=1 6 263 6.0E-24
sp|B2AMJ3|TVP38_PODAN Golgi apparatus membrane protein TVP38 OS=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) GN=TVP38 PE=3 SV=1 51 227 9.0E-11
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.5

Transmembrane Domains

Domain # Start End Length
1 4 26 22
2 39 61 22
3 71 93 22
4 149 171 22
5 191 213 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 36.49 16.96 56.03
CcL In ants, during behavior modification 63.36 32.97 93.75
CcD In ants, recently dead 51.36 25.96 76.75

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.028518 yes
SC16a CcD 0.208524 no
CcL CcD 0.417933 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6348
MVVLVGVVGVVVTAAYASHHFFFDWLAPRARVWRGKGGALAVVFLAVFLSAFPPLVGYSTAATVAGFVAGFPAGW
PLAASAAVAGSLAAFFASRSVLAACVERLVGKDTRFVALAQVLRRDGLLCLTAIRFCPLPFSLSNGFLATVPSVS
PWAFALATAISSPKLLVHVFIGSRLALLADEGDTMSSTDKAINYLSMLLSALIGLVVGLVVYRRTMARAAQLARE
GLHHHHQHHHHHHHHHLSSSAAAAEVGYHDADAPLLDPDDAAAVMLDDDLPLWPVDDADARHDDDDHHAKATEQV
GRTGHPPHEFSV
Coding >Ophio5|6348
ATGGTGGTCTTGGTCGGCGTCGTGGGCGTCGTCGTCACGGCAGCCTACGCCTCGCACCACTTCTTCTTCGACTGG
CTCGCGCCACGAGCACGAGTCTGGCGAGGAAAGGGCGGAGCTCTGGCCGTCGTCTTCCTCGCCGTCTTCCTCTCC
GCCTTCCCTCCTCTGGTGGGCTACTCGACGGCGGCGACGGTGGCCGGCTTCGTAGCCGGCTTCCCCGCCGGTTGG
CCGCTGGCCGCTTCCGCCGCCGTCGCCGGTAGCTTGGCCGCCTTTTTCGCTAGTCGCTCCGTCCTCGCTGCCTGT
GTCGAGAGGTTGGTCGGTAAGGATACGAGGTTTGTCGCTTTGGCCCAAGTCTTGAGGAGGGATGGCTTGTTGTGC
TTGACTGCCATTCGCTTTTGTCCCTTGCCGTTTAGTTTGAGTAATGGCTTTCTGGCTACGGTGCCGAGTGTGTCG
CCTTGGGCTTTTGCCCTCGCTACCGCCATTTCCAGTCCAAAGCTCCTCGTCCACGTCTTCATCGGAAGTCGTCTC
GCCCTCCTCGCCGACGAAGGCGACACCATGTCTTCCACCGACAAAGCCATCAACTATCTAAGCATGCTCCTCAGC
GCCCTCATCGGCCTCGTCGTCGGTCTCGTCGTCTACCGTCGCACCATGGCCCGCGCCGCCCAACTAGCCCGTGAA
GGGCTTCATCATCATCACCAACATCATCATCATCATCATCATCATCATCTGTCTTCTTCCGCCGCCGCCGCCGAG
GTCGGCTACCACGATGCCGACGCTCCCCTGCTTGACCCGGATGACGCCGCGGCTGTCATGCTCGATGACGACTTG
CCGCTGTGGCCTGTCGATGACGCTGACGCCCGCCATGACGACGATGACCACCACGCTAAAGCTACAGAGCAGGTG
GGACGCACCGGGCATCCGCCTCACGAGTTTTCTGTC
Transcript >Ophio5|6348
ATGGTGGTCTTGGTCGGCGTCGTGGGCGTCGTCGTCACGGCAGCCTACGCCTCGCACCACTTCTTCTTCGACTGG
CTCGCGCCACGAGCACGAGTCTGGCGAGGAAAGGGCGGAGCTCTGGCCGTCGTCTTCCTCGCCGTCTTCCTCTCC
GCCTTCCCTCCTCTGGTGGGCTACTCGACGGCGGCGACGGTGGCCGGCTTCGTAGCCGGCTTCCCCGCCGGTTGG
CCGCTGGCCGCTTCCGCCGCCGTCGCCGGTAGCTTGGCCGCCTTTTTCGCTAGTCGCTCCGTCCTCGCTGCCTGT
GTCGAGAGGTTGGTCGGTAAGGATACGAGGTTTGTCGCTTTGGCCCAAGTCTTGAGGAGGGATGGCTTGTTGTGC
TTGACTGCCATTCGCTTTTGTCCCTTGCCGTTTAGTTTGAGTAATGGCTTTCTGGCTACGGTGCCGAGTGTGTCG
CCTTGGGCTTTTGCCCTCGCTACCGCCATTTCCAGTCCAAAGCTCCTCGTCCACGTCTTCATCGGAAGTCGTCTC
GCCCTCCTCGCCGACGAAGGCGACACCATGTCTTCCACCGACAAAGCCATCAACTATCTAAGCATGCTCCTCAGC
GCCCTCATCGGCCTCGTCGTCGGTCTCGTCGTCTACCGTCGCACCATGGCCCGCGCCGCCCAACTAGCCCGTGAA
GGGCTTCATCATCATCACCAACATCATCATCATCATCATCATCATCATCTGTCTTCTTCCGCCGCCGCCGCCGAG
GTCGGCTACCACGATGCCGACGCTCCCCTGCTTGACCCGGATGACGCCGCGGCTGTCATGCTCGATGACGACTTG
CCGCTGTGGCCTGTCGATGACGCTGACGCCCGCCATGACGACGATGACCACCACGCTAAAGCTACAGAGCAGGTG
GGACGCACCGGGCATCCGCCTCACGAGTTTTCTGTCTAA
Gene >Ophio5|6348
ATGGTGGTCTTGGTCGGCGTCGTGGGCGTCGTCGTCACGGCAGCCTACGCCTCGCACCACTTCTTCTTCGACTGG
CTCGCGCCACGAGCACGAGTCTGGCGAGGAAAGGGCGGAGCTCTGGCCGTCGTCTTCCTCGCCGTCTTCCTCTCC
GCCTTCCCTCCTCTGGTGGGCTACTCGACGGCGGCGACGGTGGCCGGCTTCGTAGCCGGCTTCCCCGCCGGTTGG
CCGCTGGCCGCTTCCGCCGCCGTCGCCGGTAGCTTGGCCGCCTTTTTCGCTAGTCGCTCCGTCCTCGCTGCCTGT
GTCGAGAGGTTGGTCGGTAAGGATACGAGGTTTGTCGCTTTGGCCCAAGTCTTGAGGAGGGATGGCTTGTTGTGC
TTGACTGCCATTCGCTTTTGTCCCTTGCCGTTTAGTTTGAGTAATGGCTTTCTGGCTACGGTGCCGAGTGTGTCG
CCTTGGGCTTTTGCCCTCGCTACCGCCATTTCCAGGTTTGTCTTGTCCACCTCCCATCATCATCATCATCATCAT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCGAGGTTTTGTGACTTACACCTCGAATTGAATTACAAAGTCC
AAAGCTCCTCGTCCACGTCTTCATCGGAAGTCGTCTCGCCCTCCTCGCCGACGAAGGCGACACCATGTCTTCCAC
CGACAAAGCCATCAACTATCTAAGCATGCTCCTCAGCGCCCTCATCGGCCTCGTCGTCGGTCTCGTCGTCTACCG
TCGCACCATGGCCCGCGCCGCCCAACTAGCCCGTGAAGGGCTTCATCATCATCACCAACATCATCATCATCATCA
TCATCATCATCTGTCTTCTTCCGCCGCCGCCGCCGAGGTCGGCTACCACGATGCCGACGCTCCCCTGCTTGACCC
GGATGACGCCGCGGCTGTCATGCTCGATGACGACTTGCCGCTGTGGCCTGTCGATGACGCTGACGCCCGCCATGA
CGACGATGACCACCACGCTAAAGCTACAGAGCAGGTGGGACGCACCGGGCATCCGCCTCACGAGTTTTCTGTCTA
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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