Protein ID | Ophio5|6347 |
Gene name | |
Location | scaffold_55:31881..34200 |
Strand | + |
Gene length (bp) | 2319 |
Transcript length (bp) | 2175 |
Coding sequence length (bp) | 2172 |
Protein length (aa) | 724 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08590 | DUF1771 | Domain of unknown function (DUF1771) | 8.0E-15 | 521 | 584 |
PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 2.9E-02 | 286 | 304 |
PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 3.5E-03 | 310 | 329 |
PF01713 | Smr | Smr domain | 1.5E-06 | 596 | 651 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O64843|CID7_ARATH | Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana GN=CID7 PE=1 SV=1 | 485 | 651 | 1.0E-17 |
sp|Q86UW6|N4BP2_HUMAN | NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2 | 521 | 663 | 3.0E-08 |
sp|Q6ZPZ3|ZC3H4_MOUSE | Zinc finger CCCH domain-containing protein 4 OS=Mus musculus GN=Zc3h4 PE=1 SV=2 | 281 | 363 | 2.0E-07 |
sp|Q9UPT8|ZC3H4_HUMAN | Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens GN=ZC3H4 PE=1 SV=3 | 281 | 363 | 2.0E-07 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 66 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|6347 MVSDEHYELCLPILQDPSFEDEDRTDRLEELLKKETNLSGSALENVVLDAMWRYREASGASASPPPIRQSILRRP SPASWRGSPTPLNGSPRLGVSPLAPPGFVSTFTRTKSSTASPFSSPRASPRLALATPAIPHSPNLNAYEFASDST PAAEINGDYQTENVEWLVNDDAASVSSSVGTSSGLNAAAPEFSSMSSQQADMSPYDMLRSILGQTRTDDEIEASL ATHGYDLSATITSIMESQARGGGLMAVPPIDEPKGVLIGKSISAEGRPTTPAGQQKTTIVCKFYLSTGQCLRADC RFSHDLSNHLCKYWVMGSCLAGDTCIFSHDPSTLLNKVALEENGSDSARNQESPALQDVNSFPCLQEDKSGQKGD GAGANAVGLPTPSGPRHLYGTEAPRLRSRPVSRQQAKETTTSAPAPDDNEAFPSLGSASARQGKKHHGKRGGHGH GHKENLAPSSLADIVRRTPSPAPGPTRPESRKGVQNGNGRHGGENSAAAQAISSPKHIPWLETGERANKAYLKAR QEAIKHGGLRNKFLQSAAQAWNRNDARAAKALSLRGQSENDLMRKAHREAARELYEQRNKGGINGGSEIYVDLHG LHPDEAVDYLERTLLENSRETRPVYAITGTGHHSKSGKDKVGRAIRSYLGEWRYAYREFSVPGDRNSMGGILGVD ARSWDKSLTREKGGQEGSKVDILSQGVEIGDGKVRLLVRDPPKGPSGRR |
Coding | >Ophio5|6347 ATGGTGTCCGACGAGCACTACGAGCTGTGCCTGCCCATCCTGCAGGACCCTTCGTTCGAAGACGAGGATAGGACG GACAGGCTCGAGGAGCTACTCAAGAAAGAGACGAACCTGTCTGGCTCCGCGCTCGAGAACGTCGTTCTCGATGCC ATGTGGAGGTATCGCGAGGCGAGTGGAGCGTCGGCATCGCCTCCGCCAATCCGCCAGTCCATCTTGCGCCGTCCT TCTCCGGCATCCTGGCGCGGATCACCGACGCCCTTGAACGGATCCCCGCGGCTGGGCGTGAGCCCTCTGGCTCCT CCCGGCTTCGTGTCCACCTTTACACGAACGAAGTCGTCGACGGCCTCTCCTTTCTCGTCGCCCCGTGCCTCCCCG CGCCTCGCCCTGGCGACACCGGCCATACCGCACAGTCCGAACCTCAACGCCTACGAGTTTGCTAGCGACTCTACC CCCGCAGCCGAGATCAATGGCGATTATCAGACGGAGAATGTCGAATGGCTCGTCAACGACGATGCTGCTAGCGTT TCGTCGTCGGTCGGCACGTCGAGCGGGCTGAACGCCGCCGCACCCGAGTTCTCCTCCATGTCCTCGCAGCAGGCC GACATGTCTCCTTACGACATGCTCCGCTCCATCCTTGGACAAACCCGGACGGATGATGAGATTGAGGCCTCACTC GCCACACACGGCTACGACCTGAGCGCCACCATCACGTCCATAATGGAGAGCCAGGCCCGTGGAGGAGGGCTTATG GCCGTACCTCCGATCGACGAGCCAAAGGGTGTGCTAATAGGAAAGTCCATCTCTGCTGAAGGACGCCCCACGACA CCCGCGGGCCAGCAGAAGACGACAATCGTCTGCAAGTTTTACCTATCCACGGGCCAGTGTCTCCGCGCCGACTGC CGCTTCAGTCACGATCTGAGCAACCATCTCTGCAAGTACTGGGTTATGGGAAGTTGTCTCGCCGGCGATACATGC ATATTCTCTCACGATCCCTCGACGCTACTGAACAAGGTGGCCCTCGAAGAGAACGGAAGCGACTCGGCCAGGAAT CAGGAAAGCCCTGCATTGCAGGATGTCAACTCGTTCCCTTGCTTACAGGAAGACAAATCGGGACAAAAGGGCGAC GGCGCCGGCGCCAACGCGGTGGGCTTGCCTACCCCGTCGGGGCCGCGTCACCTCTACGGCACCGAGGCTCCGCGG CTGAGATCGCGACCTGTCAGCCGACAGCAAGCCAAGGAGACGACGACGTCGGCCCCGGCTCCGGACGACAATGAG GCATTCCCATCGCTGGGGTCGGCCTCGGCGAGGCAAGGCAAGAAGCACCACGGAAAGCGCGGCGGCCACGGTCAT GGGCACAAGGAGAACCTGGCACCCAGCTCGCTGGCAGACATTGTCCGAAGGACGCCCTCGCCGGCGCCTGGGCCG ACGCGGCCCGAATCGAGAAAGGGGGTTCAGAACGGCAACGGGCGCCACGGCGGCGAGAACAGCGCGGCGGCGCAG GCCATCTCCAGCCCCAAGCACATTCCGTGGCTGGAGACGGGCGAGCGGGCGAACAAGGCGTACCTAAAGGCCCGT CAAGAAGCCATTAAGCATGGCGGGCTTCGCAACAAGTTTTTGCAAAGCGCGGCGCAGGCGTGGAACCGCAACGAC GCGAGGGCGGCCAAGGCGCTGAGCCTCCGCGGGCAGAGCGAGAACGACTTGATGCGGAAGGCGCACCGAGAGGCG GCGCGCGAGCTGTACGAGCAACGGAACAAGGGCGGCATCAACGGCGGGTCGGAGATCTACGTCGACCTCCACGGA CTGCATCCGGACGAGGCGGTGGATTACCTGGAGAGGACGCTGCTGGAGAACAGCAGGGAGACGCGCCCCGTCTAC GCCATCACCGGCACAGGCCATCACAGCAAGAGCGGTAAGGACAAGGTGGGCAGGGCGATCCGCAGCTATCTCGGC GAGTGGCGATACGCATACCGCGAGTTCTCGGTGCCGGGCGATCGCAACAGCATGGGCGGGATCCTGGGCGTCGAC GCGCGCAGCTGGGACAAGTCGTTGACGCGGGAAAAGGGAGGTCAAGAGGGATCCAAGGTGGACATACTCAGCCAG GGCGTGGAGATTGGGGACGGCAAGGTGAGGCTGCTGGTGCGGGATCCTCCCAAGGGACCGAGCGGGCGACGA |
Transcript | >Ophio5|6347 ATGGTGTCCGACGAGCACTACGAGCTGTGCCTGCCCATCCTGCAGGACCCTTCGTTCGAAGACGAGGATAGGACG GACAGGCTCGAGGAGCTACTCAAGAAAGAGACGAACCTGTCTGGCTCCGCGCTCGAGAACGTCGTTCTCGATGCC ATGTGGAGGTATCGCGAGGCGAGTGGAGCGTCGGCATCGCCTCCGCCAATCCGCCAGTCCATCTTGCGCCGTCCT TCTCCGGCATCCTGGCGCGGATCACCGACGCCCTTGAACGGATCCCCGCGGCTGGGCGTGAGCCCTCTGGCTCCT CCCGGCTTCGTGTCCACCTTTACACGAACGAAGTCGTCGACGGCCTCTCCTTTCTCGTCGCCCCGTGCCTCCCCG CGCCTCGCCCTGGCGACACCGGCCATACCGCACAGTCCGAACCTCAACGCCTACGAGTTTGCTAGCGACTCTACC CCCGCAGCCGAGATCAATGGCGATTATCAGACGGAGAATGTCGAATGGCTCGTCAACGACGATGCTGCTAGCGTT TCGTCGTCGGTCGGCACGTCGAGCGGGCTGAACGCCGCCGCACCCGAGTTCTCCTCCATGTCCTCGCAGCAGGCC GACATGTCTCCTTACGACATGCTCCGCTCCATCCTTGGACAAACCCGGACGGATGATGAGATTGAGGCCTCACTC GCCACACACGGCTACGACCTGAGCGCCACCATCACGTCCATAATGGAGAGCCAGGCCCGTGGAGGAGGGCTTATG GCCGTACCTCCGATCGACGAGCCAAAGGGTGTGCTAATAGGAAAGTCCATCTCTGCTGAAGGACGCCCCACGACA CCCGCGGGCCAGCAGAAGACGACAATCGTCTGCAAGTTTTACCTATCCACGGGCCAGTGTCTCCGCGCCGACTGC CGCTTCAGTCACGATCTGAGCAACCATCTCTGCAAGTACTGGGTTATGGGAAGTTGTCTCGCCGGCGATACATGC ATATTCTCTCACGATCCCTCGACGCTACTGAACAAGGTGGCCCTCGAAGAGAACGGAAGCGACTCGGCCAGGAAT CAGGAAAGCCCTGCATTGCAGGATGTCAACTCGTTCCCTTGCTTACAGGAAGACAAATCGGGACAAAAGGGCGAC GGCGCCGGCGCCAACGCGGTGGGCTTGCCTACCCCGTCGGGGCCGCGTCACCTCTACGGCACCGAGGCTCCGCGG CTGAGATCGCGACCTGTCAGCCGACAGCAAGCCAAGGAGACGACGACGTCGGCCCCGGCTCCGGACGACAATGAG GCATTCCCATCGCTGGGGTCGGCCTCGGCGAGGCAAGGCAAGAAGCACCACGGAAAGCGCGGCGGCCACGGTCAT GGGCACAAGGAGAACCTGGCACCCAGCTCGCTGGCAGACATTGTCCGAAGGACGCCCTCGCCGGCGCCTGGGCCG ACGCGGCCCGAATCGAGAAAGGGGGTTCAGAACGGCAACGGGCGCCACGGCGGCGAGAACAGCGCGGCGGCGCAG GCCATCTCCAGCCCCAAGCACATTCCGTGGCTGGAGACGGGCGAGCGGGCGAACAAGGCGTACCTAAAGGCCCGT CAAGAAGCCATTAAGCATGGCGGGCTTCGCAACAAGTTTTTGCAAAGCGCGGCGCAGGCGTGGAACCGCAACGAC GCGAGGGCGGCCAAGGCGCTGAGCCTCCGCGGGCAGAGCGAGAACGACTTGATGCGGAAGGCGCACCGAGAGGCG GCGCGCGAGCTGTACGAGCAACGGAACAAGGGCGGCATCAACGGCGGGTCGGAGATCTACGTCGACCTCCACGGA CTGCATCCGGACGAGGCGGTGGATTACCTGGAGAGGACGCTGCTGGAGAACAGCAGGGAGACGCGCCCCGTCTAC GCCATCACCGGCACAGGCCATCACAGCAAGAGCGGTAAGGACAAGGTGGGCAGGGCGATCCGCAGCTATCTCGGC GAGTGGCGATACGCATACCGCGAGTTCTCGGTGCCGGGCGATCGCAACAGCATGGGCGGGATCCTGGGCGTCGAC GCGCGCAGCTGGGACAAGTCGTTGACGCGGGAAAAGGGAGGTCAAGAGGGATCCAAGGTGGACATACTCAGCCAG GGCGTGGAGATTGGGGACGGCAAGGTGAGGCTGCTGGTGCGGGATCCTCCCAAGGGACCGAGCGGGCGACGATGA |
Gene | >Ophio5|6347 ATGGTGTCCGACGAGCACTACGAGCTGTGCCTGCCCATCCTGCAGGACCCTTCGTTCGAAGACGAGGATAGGACG GACAGGCTCGAGGAGCTACTCAAGAAAGAGACGAACCTGTCTGGCTCCGCGCTCGAGAACGTCGTTCTCGATGCC ATGTGGAGGTATCGCGAGGCGAGTGGAGCGTCGGCATCGCCTCCGCCAATCCGCCAGTCCATCTTGCGCCGTCCT TCTCCGGCATCCTGGCGCGGATCACCGACGCCCTTGAACGGATCCCCGCGGCTGGGCGTGAGCCCTCTGGCTCCT CCCGGCTTCGTGTCCACCTTTACACGAACGAAGTCGTCGACGGCCTCTCCTTTCTCGTCGCCCCGTGCCTCCCCG CGCCTCGCCCTGGCGACACCGGCCATACCGCACAGTCCGAACCTCAACGCCTACGAGTTTGCTAGCGACTCTACC CCCGCAGCCGAGATCAATGGCGATTATCAGACGGAGAATGTCGAATGGCTCGTCAACGACGATGCTGCTAGCGTT TCGTCGTCGGTCGGCACGTCGAGCGGGCTGAACGCCGCCGCACCCGAGTTCTCCTCCATGTCCTCGCAGCAGGCC GACATGTCTCCTTACGACATGCTCCGCTCCATCCTTGGACAAACCCGGACGGATGATGAGATTGAGGCCTCACTC GCCACACACGGCTACGACCTGAGCGCCACCATCACGTCCATAATGGAGAGCCAGGCCCGTGGAGGAGGGCTTATG GCCGTACCTCCGATCGACGAGCCAAAGGGTGTGCTAATAGGAAAGTCCATCTCTGCTGAAGGACGCCCCACGACA CCCGCGGGCCAGCAGAAGACGACAATCGTCTGCAAGTTTTACCTATCCACGGGCCAGTGTCTCCGCGCCGACTGC CGCTTCAGTCACGATCTGAGCAACCATCTCTGCAAGTGGGTCGCCCAATGCTTTCCCTTCGCTCACCACCTCGAT AGCTGCCTCCAGACAAGCAGAGCTGACACTTTTCCTCGTCAGGTACTGGGTTATGGGAAGTTGTCTCGCCGGCGA TACATGCATATTCTCTCACGATCCCTCGACGCTACTGAACAAGGTGGCCCTCGAAGAGAACGGAAGCGACTCGGC CAGGAATCAGGAAAGCCCTGCATTGCAGGATGTCAACTCGTTCCCTTGCTTACAGGAAGACAAATCGGGACAAAA GGGCGACGGCGCCGGCGCCAACGCGGTGGGCTTGCCTACCCCGTCGGGGCCGCGTCACCTCTACGGCACCGAGGC TCCGCGGCTGAGATCGCGACCTGTCAGCCGACAGCAAGCCAAGGAGACGACGACGTCGGCCCCGGCTCCGGACGA CAATGAGGCATTCCCATCGCTGGGGTCGGCCTCGGCGAGGCAAGGCAAGAAGCACCACGGAAAGCGCGGCGGCCA CGGTCATGGGCACAAGGAGAACCTGGCACCCAGCTCGCTGGCAGACATTGTCCGAAGGACGCCCTCGCCGGCGCC TGGGCCGACGCGGCCCGAATCGAGAAAGGGGGTTCAGAACGGCAACGGGCGCCACGGCGGCGAGAACAGCGCGGC GGCGCAGGCCATCTCCAGCCCCAAGCACATTCCGTGGCTGGAGACGGGCGAGCGGGCGAACAAGGCGTACCTAAA GGCCCGTCAAGAAGCCATTAAGCATGGCGGGCTTCGCAACAAGTTTTTGCAAAGGTAGGTCTACGGGGCATCCCC GGGCGAGCATGCGATGGGCACGGGCTGACCGGGAACGATAGCGCGGCGCAGGCGTGGAACCGCAACGACGCGAGG GCGGCCAAGGCGCTGAGCCTCCGCGGGCAGAGCGAGAACGACTTGATGCGGAAGGCGCACCGAGAGGCGGCGCGC GAGCTGTACGAGCAACGGAACAAGGGCGGCATCAACGGCGGGTCGGAGATCTACGTCGACCTCCACGGACTGCAT CCGGACGAGGCGGTGGATTACCTGGAGAGGACGCTGCTGGAGAACAGCAGGGAGACGCGCCCCGTCTACGCCATC ACCGGCACAGGCCATCACAGCAAGAGCGGTAAGGACAAGGTGGGCAGGGCGATCCGCAGCTATCTCGGCGAGTGG CGATACGCATACCGCGAGTTCTCGGTGCCGGGCGATCGCAACAGCATGGGCGGGATCCTGGGCGTCGACGCGCGC AGCTGGGACAAGTCGTTGACGCGGGAAAAGGGAGGTCAAGAGGGATCCAAGGTGGACATACTCAGCCAGGGCGTG GAGATTGGGGACGGCAAGGTGAGGCTGCTGGTGCGGGATCCTCCCAAGGGACCGAGCGGGCGACGATGA |