Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6325
Gene name
Locationscaffold_548:10976..12353
Strand+
Gene length (bp)1377
Transcript length (bp)1245
Coding sequence length (bp)1242
Protein length (aa) 414

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04142 Nuc_sug_transp Nucleotide-sugar transporter 7.8E-09 131 260

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q09875|YAGC_SCHPO Uncharacterized protein C12G12.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12G12.12 PE=4 SV=1 13 393 7.0E-65
sp|Q8N357|S35F6_HUMAN Solute carrier family 35 member F6 OS=Homo sapiens GN=SLC35F6 PE=1 SV=1 9 406 3.0E-59
sp|Q5RFT1|S35F6_PONAB Solute carrier family 35 member F6 OS=Pongo abelii GN=SLC35F6 PE=2 SV=1 9 406 2.0E-57
sp|Q5RKH7|S35F6_RAT Solute carrier family 35 member F6 OS=Rattus norvegicus GN=Slc35f6 PE=2 SV=1 9 399 6.0E-46
sp|Q8VE96|S35F6_MOUSE Solute carrier family 35 member F6 OS=Mus musculus GN=Slc35f6 PE=1 SV=1 9 399 1.0E-45

GO

GO Term Description Terminal node
GO:0000139 Golgi membrane Yes
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity Yes
GO:0016021 integral component of membrane Yes
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport Yes
GO:0005215 transporter activity No
GO:0015931 nucleobase-containing compound transport No
GO:0008150 biological_process No
GO:0071705 nitrogen compound transport No
GO:0031224 intrinsic component of membrane No
GO:0016020 membrane No
GO:0005338 nucleotide-sugar transmembrane transporter activity No
GO:0051234 establishment of localization No
GO:0006810 transport No
GO:0051179 localization No
GO:0003674 molecular_function No
GO:0022857 transmembrane transporter activity No
GO:0055085 transmembrane transport No
GO:0110165 cellular anatomical entity No
GO:0009987 cellular process No
GO:0031090 organelle membrane No
GO:0015932 nucleobase-containing compound transmembrane transporter activity No
GO:0015780 nucleotide-sugar transmembrane transport No
GO:0005575 cellular_component No
GO:0098588 bounding membrane of organelle No
GO:0071702 organic substance transport No
GO:1901505 carbohydrate derivative transmembrane transporter activity No
GO:1901264 carbohydrate derivative transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

Domain # Start End Length
1 5 24 19
2 128 150 22
3 154 176 22
4 183 205 22
5 229 251 22
6 272 294 22
7 314 333 19
8 353 375 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6325
MASRAAVPFLVAMMLITGVCNTLLTKYQDNQCVRNCGRDDAGRTVRFEQPVLQTAQMFVGEMGCWLVVGLTTLYR
KFVTKHSPAGRGYEAVNPDDRTDDARDAPDDDTPDGGLKPDSDSSSVLRGWRVVLLALPAICDICGTTLMNAGLL
FVAASIYQMTRGALVLFVALFSVLFLQRHLRLFQWLSLVGVVLGVAVVGLAGALWPNEKKLSNRSSEVEILDDTP
SDATSVIIGIMLIAGAQIFTATQFVLEEWMLENSPIAPIRVVSWEGVFGFSVTLVVMVIMHFAVGRTHTGRYGYF
DMEEGLHQMSQKRIWISSVLIMISIGGFNYFGLAVTRTVSATSRSTIDTCRTLFIWIVSLGLGWESFKLLQIAGF
AILVYSTFVFNGIVRPPLRGLQREDQVEELLPEEPIEHH
Coding >Ophio5|6325
ATGGCGTCGCGCGCTGCTGTTCCGTTCCTGGTGGCCATGATGCTAATTACCGGCGTCTGTAACACGCTTCTTACC
AAATACCAGGACAATCAATGCGTTCGGAATTGCGGACGAGACGACGCCGGCCGGACCGTTCGCTTCGAACAGCCT
GTGCTTCAGACGGCCCAAATGTTCGTGGGTGAAATGGGATGCTGGCTTGTTGTAGGGCTCACTACACTCTACCGC
AAATTTGTTACCAAGCATTCGCCCGCAGGTCGAGGGTATGAAGCGGTAAACCCCGACGACAGGACCGACGATGCT
CGAGATGCTCCAGACGATGACACGCCTGACGGCGGCCTGAAGCCTGATAGCGACAGCTCATCAGTTCTGCGTGGC
TGGCGTGTAGTACTTCTCGCGCTGCCGGCCATCTGCGACATTTGTGGCACTACACTCATGAACGCCGGATTGCTC
TTCGTCGCTGCTTCTATCTACCAGATGACCAGAGGAGCATTGGTTCTGTTTGTCGCTCTCTTCAGCGTCCTCTTC
TTGCAACGGCATCTTCGTCTATTCCAGTGGCTCTCCCTAGTCGGCGTTGTCCTGGGTGTCGCCGTCGTTGGCCTG
GCCGGGGCACTGTGGCCCAACGAGAAGAAGTTGTCGAACCGGAGTAGTGAAGTTGAAATATTAGACGATACGCCC
TCAGACGCTACAAGTGTCATCATCGGAATCATGTTGATCGCCGGGGCGCAGATCTTTACCGCCACCCAATTCGTG
CTGGAAGAGTGGATGCTCGAGAATTCCCCGATTGCTCCCATCAGAGTGGTTAGCTGGGAAGGAGTTTTTGGCTTT
TCCGTCACGCTTGTTGTCATGGTCATTATGCACTTTGCTGTGGGCCGTACGCACACCGGTCGATATGGCTATTTC
GATATGGAGGAAGGCTTGCACCAAATGTCGCAGAAGCGTATCTGGATATCGAGTGTCCTTATCATGATAAGCATT
GGTGGCTTCAATTATTTCGGACTCGCCGTTACTCGCACCGTCAGCGCCACTTCGAGGTCGACCATCGACACATGC
AGGACGCTATTTATTTGGATCGTTTCCCTTGGCCTCGGATGGGAGTCGTTCAAGTTGCTTCAAATCGCCGGTTTC
GCCATTCTGGTCTACTCGACATTTGTCTTTAATGGCATCGTGCGACCGCCGTTACGCGGTTTGCAACGCGAAGAC
CAAGTAGAGGAGCTTCTTCCGGAGGAGCCGATAGAGCATCAT
Transcript >Ophio5|6325
ATGGCGTCGCGCGCTGCTGTTCCGTTCCTGGTGGCCATGATGCTAATTACCGGCGTCTGTAACACGCTTCTTACC
AAATACCAGGACAATCAATGCGTTCGGAATTGCGGACGAGACGACGCCGGCCGGACCGTTCGCTTCGAACAGCCT
GTGCTTCAGACGGCCCAAATGTTCGTGGGTGAAATGGGATGCTGGCTTGTTGTAGGGCTCACTACACTCTACCGC
AAATTTGTTACCAAGCATTCGCCCGCAGGTCGAGGGTATGAAGCGGTAAACCCCGACGACAGGACCGACGATGCT
CGAGATGCTCCAGACGATGACACGCCTGACGGCGGCCTGAAGCCTGATAGCGACAGCTCATCAGTTCTGCGTGGC
TGGCGTGTAGTACTTCTCGCGCTGCCGGCCATCTGCGACATTTGTGGCACTACACTCATGAACGCCGGATTGCTC
TTCGTCGCTGCTTCTATCTACCAGATGACCAGAGGAGCATTGGTTCTGTTTGTCGCTCTCTTCAGCGTCCTCTTC
TTGCAACGGCATCTTCGTCTATTCCAGTGGCTCTCCCTAGTCGGCGTTGTCCTGGGTGTCGCCGTCGTTGGCCTG
GCCGGGGCACTGTGGCCCAACGAGAAGAAGTTGTCGAACCGGAGTAGTGAAGTTGAAATATTAGACGATACGCCC
TCAGACGCTACAAGTGTCATCATCGGAATCATGTTGATCGCCGGGGCGCAGATCTTTACCGCCACCCAATTCGTG
CTGGAAGAGTGGATGCTCGAGAATTCCCCGATTGCTCCCATCAGAGTGGTTAGCTGGGAAGGAGTTTTTGGCTTT
TCCGTCACGCTTGTTGTCATGGTCATTATGCACTTTGCTGTGGGCCGTACGCACACCGGTCGATATGGCTATTTC
GATATGGAGGAAGGCTTGCACCAAATGTCGCAGAAGCGTATCTGGATATCGAGTGTCCTTATCATGATAAGCATT
GGTGGCTTCAATTATTTCGGACTCGCCGTTACTCGCACCGTCAGCGCCACTTCGAGGTCGACCATCGACACATGC
AGGACGCTATTTATTTGGATCGTTTCCCTTGGCCTCGGATGGGAGTCGTTCAAGTTGCTTCAAATCGCCGGTTTC
GCCATTCTGGTCTACTCGACATTTGTCTTTAATGGCATCGTGCGACCGCCGTTACGCGGTTTGCAACGCGAAGAC
CAAGTAGAGGAGCTTCTTCCGGAGGAGCCGATAGAGCATCATTAA
Gene >Ophio5|6325
ATGGCGTCGCGCGCTGCTGTTCCGTTCCTGGTGGCCATGATGCTAATTACCGGCGTCTGTAACACGCTTCTTACC
AAATACCAGGTCCGAATGCGAAGTCGACGCCCATCATCTTGACTGGACTAGAAAACACTGACCAGACCAGGACAA
TCAATGCGTTCGGAATTGCGGACGAGACGACGCCGGCCGGACCGTTCGCTTCGAACAGCCTGTGCTTCAGACGGC
CCAAATGTTCGTGGGTGAAATGGGATGCTGGCTTGTTGTAGGGCTCACTACACTCTACCGCAAATTTGTTACCAA
GCATTCGCCCGCAGGTCGAGGGTATGAAGCGGTAAACCCCGACGACAGGACCGACGATGCTCGAGATGCTCCAGA
CGATGACACGCCTGACGGCGGCCTGAAGCCTGATAGCGACAGCTCATCAGTTCTGCGTGGCTGGCGTGTAGTACT
TCTCGCGCTGCCGGCCATCTGCGACATTTGTGGCACTACACTCATGAACGCCGGATTGCTCTTCGTCGCTGCTTC
TATCTACCAGATGACCAGAGGAGCATTGGTTCTGTTTGTCGCTCTCTTCAGCGTCCTCTTCTTGCAACGGCATCT
TCGTCTATTCCAGTGGCTCTCCCTAGTCGGCGTTGTCCTGGGTGTCGCCGTCGTTGGCCTGGCCGGGGCACTGTG
GCCCAACGAGAAGAAGTTGTCGAACCGGAGTAGTGAAGTTGAAATATTAGACGATACGCCCTCAGACGCTACAAG
TGTCATCATCGGAATCATGTTGATCGCCGGGGCGCAGATCTTTACCGCCACCCAATTCGTGCTGGAAGAGTGGAT
GCTCGAGAATTCCCCGATTGCTCCCATCAGAGTGGTTAGCTGGGAAGGAGTTTTTGGCTTTTCCGTCACGCTTGT
TGTCATGGTCATTATGCACTTTGCTGTGGGCCGTACGCACACCGGTCGATATGGCTATTTCGATATGGAGGAAGG
CTTGCACCAAATGTCGCAGAAGCGTATCTGGATATCGAGTGTCCTTATCATGATAAGCATTGGGTAAGAAAGCAG
CCCGTCGTGACCCATGATGGGACGTTGTTCCTGCTGACAACTGTCCGCCACTGCTAAAGTGGCTTCAATTATTTC
GGACTCGCCGTTACTCGCACCGTCAGCGCCACTTCGAGGTCGACCATCGACACATGCAGGACGCTATTTATTTGG
ATCGTTTCCCTTGGCCTCGGATGGGAGTCGTTCAAGTTGCTTCAAATCGCCGGTTTCGCCATTCTGGTCTACTCG
ACATTTGTCTTTAATGGCATCGTGCGACCGCCGTTACGCGGTTTGCAACGCGAAGACCAAGTAGAGGAGCTTCTT
CCGGAGGAGCCGATAGAGCATCATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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