Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|632
Gene name
Locationscaffold_117:15924..16307
Strand-
Gene length (bp)383
Transcript length (bp)228
Coding sequence length (bp)225
Protein length (aa) 75

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.5

Transmembrane Domains

Domain # Start End Length
1 5 27 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|632
MSVAQFGIVVSVTAIDVHGVMVLVFWVREAVVGVRLVTRISEVMEQGGVVESGWDELTRHGMQPRPIDKANNFSS
Coding >Ophio5|632
ATGTCCGTCGCGCAATTCGGCATCGTCGTCAGCGTCACGGCCATCGACGTCCATGGCGTCATGGTCCTCGTTTTC
TGGGTTCGCGAGGCCGTCGTTGGCGTCCGCCTCGTCACCCGAATCTCCGAAGTCATGGAGCAAGGCGGAGTGGTG
GAAAGTGGCTGGGATGAGTTGACGAGACACGGGATGCAGCCGCGCCCTATCGATAAGGCAAACAACTTCAGCTCC
Transcript >Ophio5|632
ATGTCCGTCGCGCAATTCGGCATCGTCGTCAGCGTCACGGCCATCGACGTCCATGGCGTCATGGTCCTCGTTTTC
TGGGTTCGCGAGGCCGTCGTTGGCGTCCGCCTCGTCACCCGAATCTCCGAAGTCATGGAGCAAGGCGGAGTGGTG
GAAAGTGGCTGGGATGAGTTGACGAGACACGGGATGCAGCCGCGCCCTATCGATAAGGCAAACAACTTCAGCTCC
TAA
Gene >Ophio5|632
ATGTCCGTCGCGCAATTCGGCATCGTCGTCAGCGTCACGGCCATCGACGTCCATGGCGTCATGGTCCTCGTTTTC
TGGGTTCGCGAGGCCGTCGTTGGCGTCCGCCTCGTCACCCGAATCTCCGAAGTCATGGAGCAGTTCATCCACAGC
GGTAGACATTGAATGAGATTATCTGTGGCCGCGAGAGGTTAATTTTTTTTTTTTGGAAAATCCTCTCCAGAGGCG
GAGTGGTGGAAAGTGGCTGGGATGAGTTGACGAGGTTTGTTCGATGAAGTCCTGGCTCTGCTTGGGTGAGTCACG
AGGCTGAGTCACGAGGCTGAACTTGATCCAGACACGGGATGCAGCCGCGCCCTATCGATAAGGCAAACAACTTCA
GCTCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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