Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6318
Gene name
Locationscaffold_547:4245..5191
Strand+
Gene length (bp)946
Transcript length (bp)894
Coding sequence length (bp)891
Protein length (aa) 297

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01822 WSC WSC domain 3.0E-11 58 131

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P87179|WSC1_SCHPO Cell wall integrity and stress response component 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wsc1 PE=1 SV=3 199 296 1.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 204 226 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6318
MKTSAIALAALAAASQAYATLDLPTLVNRDLRATLVERQAKGQQKPSVFPLPNAQTSHGCYKSQGNMTTHDVQHL
SSGSCNDVCKAGKFWVSGLQGSQCFCGFAYPPQKDIVDDEKCNYPCPSYPLEACGGLADAGGFWSVFNTGVNVNA
KNFESSSTTSSSSQSTNSQDDQDPSVPSVVTQTHVTTQGPNPDEKKGGANTAGIAAGAVAGLVVAAALVGGLIFY
LRRKRNAQIEEEHRRNAAVSAFINGSKPPGSSGSMSMTDARLDPVMVNRRMSDGSIADNEDYSRRILRVTNA
Coding >Ophio5|6318
ATGAAGACGTCGGCAATTGCCCTTGCGGCCCTGGCGGCTGCCTCGCAGGCCTACGCCACCCTCGACCTTCCCACT
CTCGTCAACCGCGACCTGCGAGCCACACTGGTCGAGCGCCAAGCCAAGGGCCAGCAGAAGCCGTCGGTATTTCCT
CTACCAAACGCGCAAACTTCGCATGGATGCTACAAATCCCAAGGCAACATGACGACGCATGACGTCCAGCACTTG
TCGTCGGGCTCCTGCAATGATGTCTGCAAGGCCGGCAAGTTTTGGGTGTCGGGGCTGCAGGGCTCTCAGTGCTTT
TGCGGCTTCGCCTACCCTCCTCAAAAGGACATTGTGGATGACGAAAAGTGCAACTATCCCTGTCCTTCCTACCCC
CTCGAGGCCTGTGGTGGCCTCGCCGATGCTGGCGGCTTCTGGTCTGTCTTCAACACTGGCGTCAACGTAAACGCC
AAGAACTTTGAGTCGTCATCGACCACCTCGAGCTCGTCCCAGTCTACCAACTCCCAAGACGACCAAGACCCTTCT
GTGCCCTCCGTCGTCACACAGACGCATGTCACGACTCAGGGCCCGAACCCCGACGAGAAGAAGGGCGGCGCCAAC
ACTGCTGGCATCGCCGCCGGCGCCGTTGCTGGCCTGGTCGTTGCGGCTGCCCTCGTCGGCGGCCTCATATTCTAC
CTGCGGCGGAAGCGCAATGCCCAGATTGAGGAGGAACACCGTCGAAATGCCGCCGTCAGCGCCTTCATCAACGGT
TCCAAGCCTCCGGGCAGCAGCGGCAGCATGTCCATGACAGATGCCCGGCTCGATCCCGTCATGGTGAATCGCAGG
ATGAGTGACGGCAGTATCGCGGATAACGAAGATTATTCCCGCAGGATCCTTCGGGTCACCAACGCA
Transcript >Ophio5|6318
ATGAAGACGTCGGCAATTGCCCTTGCGGCCCTGGCGGCTGCCTCGCAGGCCTACGCCACCCTCGACCTTCCCACT
CTCGTCAACCGCGACCTGCGAGCCACACTGGTCGAGCGCCAAGCCAAGGGCCAGCAGAAGCCGTCGGTATTTCCT
CTACCAAACGCGCAAACTTCGCATGGATGCTACAAATCCCAAGGCAACATGACGACGCATGACGTCCAGCACTTG
TCGTCGGGCTCCTGCAATGATGTCTGCAAGGCCGGCAAGTTTTGGGTGTCGGGGCTGCAGGGCTCTCAGTGCTTT
TGCGGCTTCGCCTACCCTCCTCAAAAGGACATTGTGGATGACGAAAAGTGCAACTATCCCTGTCCTTCCTACCCC
CTCGAGGCCTGTGGTGGCCTCGCCGATGCTGGCGGCTTCTGGTCTGTCTTCAACACTGGCGTCAACGTAAACGCC
AAGAACTTTGAGTCGTCATCGACCACCTCGAGCTCGTCCCAGTCTACCAACTCCCAAGACGACCAAGACCCTTCT
GTGCCCTCCGTCGTCACACAGACGCATGTCACGACTCAGGGCCCGAACCCCGACGAGAAGAAGGGCGGCGCCAAC
ACTGCTGGCATCGCCGCCGGCGCCGTTGCTGGCCTGGTCGTTGCGGCTGCCCTCGTCGGCGGCCTCATATTCTAC
CTGCGGCGGAAGCGCAATGCCCAGATTGAGGAGGAACACCGTCGAAATGCCGCCGTCAGCGCCTTCATCAACGGT
TCCAAGCCTCCGGGCAGCAGCGGCAGCATGTCCATGACAGATGCCCGGCTCGATCCCGTCATGGTGAATCGCAGG
ATGAGTGACGGCAGTATCGCGGATAACGAAGATTATTCCCGCAGGATCCTTCGGGTCACCAACGCATGA
Gene >Ophio5|6318
ATGAAGACGTCGGCAATTGCCCTTGCGGCCCTGGCGGCTGCCTCGCAGGCCTACGCCACCCTCGACCTTCCCACT
CTCGTCAACCGCGACCTGCGAGCCACACTGGTCGAGCGCCAAGCCAAGGGCCAGCAGAAGCCGTCGGTATTTCCT
CTACCAAACGCGCAAACTTCGCATGGATGCTACAAATCCCAAGGCAACATGACGACGCATGACGTCCAGCACTTG
TCGTCGGGCTCCTGCAATGATGTCTGCAAGGCCGGCAAGTTTTGGGTGTCGGGGCTGCAGGGCTCTCAGTGCTTT
TGCGGCTTCGCCTACCCTCCTCAAAAGGACATTGTGGATGACGAAAAGTGCAACTATCCCTGTCCTTCCTACCCC
CTCGAGGCCTGTGGTGGCCTCGCCGATGCTGGCGGCTTCTGGTCTGTCTTCAACACTGGCGTCAACGTAAACGCC
AAGAACTTTGAGTCGTCATCGACCACCTCGAGCTCGTCCCAGTCTACCAACTCCCAAGACGACCAAGACCCTTCT
GTGCCCTCCGTCGTCACACAGACGCATGTCACGACTCAGGGCCCGAACCCCGACGAGAAGAAGGGCGGCGCCAAC
ACTGCTGGCATCGCCGCCGGCGCCGTTGCTGGCCTGGTCGTTGCGGCTGCCCTCGTCGGCGGCCTCATATTCTAC
CTGCGGCGGAAGCGCAATGCCCAGATTGAGGAGGAACACCGTCGAAATGCCGCCGTCAGCGCCTTCATCAACGGT
TCCAAGCCTCCGGGCAGCAGCGGCAGCATGTCCATGACAGATGCCCGGCTCGATCCCGTCATGGTGAATCGCAGG
ATGAGTGACGGCAGTATCGCGGATAACGAAGATTATTCCCGCAGGATCCTTCGGGTATCGTATCCTCAACCCTTG
TAGGGAGATGCTTTCTGACGATTCGTAAAAGGTCACCAACGCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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