© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6312 |
| Gene name | |
| Location | scaffold_546:3784..4919 |
| Strand | + |
| Gene length (bp) | 1135 |
| Transcript length (bp) | 933 |
| Coding sequence length (bp) | 930 |
| Protein length (aa) | 310 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
| 2 | 48 | 70 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 26.52 | 11.45 | 41.59 |
| CcL | In ants, during behavior modification | 46.09 | 22.08 | 70.10 |
| CcD | In ants, recently dead | 38.91 | 18.43 | 59.38 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.035985 | yes |
| SC16a | CcD | 0.165982 | no |
| CcL | CcD | 0.558552 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6312 MAIPWDSILSIAFIIGPIALGKAVTSYRSARNVSRPPKSAVRPVPLRIWPALGLLFLVAAFYLVQTLPALAPENI FVRTQSRLLTPADVLFNRLASLRPDHALTPHDEALRARLVNIETLVTASTWTDVHGSQWRTIATLAAAFLAAADV FMVKTYDYKSNTASLRLEDIDFFFWSMRSYRLFALAAFDALLGYLIYLSCTNRAFATPISAPERVDALARGLLSV KSKMSAMGIVRNTALRDTDLRSRSQAYWIHEVRLMSEVMEERDVVEGVNDALSSRIDMQAVLRDADAYSQAVLQP LQNLAPDDAS |
| Coding | >Ophio5|6312 ATGGCCATCCCCTGGGACTCAATCCTGTCTATAGCCTTCATTATCGGCCCCATTGCCTTGGGGAAAGCCGTGACG TCGTATCGCTCCGCCCGCAACGTCTCGCGACCGCCGAAATCCGCCGTACGGCCCGTTCCGCTTCGCATCTGGCCC GCGCTCGGGCTGCTATTCCTCGTGGCCGCTTTTTATCTTGTGCAGACGCTGCCTGCGCTGGCGCCGGAGAATATC TTTGTTCGTACGCAGAGTAGGCTGCTTACTCCTGCCGATGTCCTCTTCAACCGACTCGCGTCTTTACGGCCTGAT CATGCGTTGACGCCCCACGATGAGGCTTTACGCGCAAGGCTCGTCAATATCGAGACCCTCGTTACAGCCTCCACC TGGACCGACGTCCACGGCTCGCAGTGGCGCACCATCGCCACCCTAGCCGCGGCCTTTCTCGCTGCTGCCGATGTA TTCATGGTCAAAACCTACGACTACAAGTCCAATACCGCCTCCTTGCGGCTCGAAGACATCGACTTTTTCTTCTGG TCCATGCGATCATATCGCCTGTTCGCCCTCGCCGCCTTTGACGCTCTACTAGGCTATCTCATCTACCTGTCCTGC ACAAACCGAGCATTCGCGACGCCGATTTCCGCCCCGGAGCGCGTCGACGCCCTCGCCCGCGGCCTCTTGTCTGTC AAAAGCAAGATGAGCGCCATGGGCATCGTCAGGAACACGGCTTTGCGTGACACGGATCTGCGGTCGCGCAGTCAG GCGTATTGGATACACGAGGTTCGCCTCATGAGCGAGGTCATGGAGGAGAGAGACGTCGTCGAGGGCGTCAACGAT GCCCTGAGCAGCCGCATTGATATGCAGGCTGTGCTCAGGGACGCCGACGCTTACTCCCAAGCTGTCCTGCAACCG CTGCAGAACCTGGCGCCCGACGATGCATCG |
| Transcript | >Ophio5|6312 ATGGCCATCCCCTGGGACTCAATCCTGTCTATAGCCTTCATTATCGGCCCCATTGCCTTGGGGAAAGCCGTGACG TCGTATCGCTCCGCCCGCAACGTCTCGCGACCGCCGAAATCCGCCGTACGGCCCGTTCCGCTTCGCATCTGGCCC GCGCTCGGGCTGCTATTCCTCGTGGCCGCTTTTTATCTTGTGCAGACGCTGCCTGCGCTGGCGCCGGAGAATATC TTTGTTCGTACGCAGAGTAGGCTGCTTACTCCTGCCGATGTCCTCTTCAACCGACTCGCGTCTTTACGGCCTGAT CATGCGTTGACGCCCCACGATGAGGCTTTACGCGCAAGGCTCGTCAATATCGAGACCCTCGTTACAGCCTCCACC TGGACCGACGTCCACGGCTCGCAGTGGCGCACCATCGCCACCCTAGCCGCGGCCTTTCTCGCTGCTGCCGATGTA TTCATGGTCAAAACCTACGACTACAAGTCCAATACCGCCTCCTTGCGGCTCGAAGACATCGACTTTTTCTTCTGG TCCATGCGATCATATCGCCTGTTCGCCCTCGCCGCCTTTGACGCTCTACTAGGCTATCTCATCTACCTGTCCTGC ACAAACCGAGCATTCGCGACGCCGATTTCCGCCCCGGAGCGCGTCGACGCCCTCGCCCGCGGCCTCTTGTCTGTC AAAAGCAAGATGAGCGCCATGGGCATCGTCAGGAACACGGCTTTGCGTGACACGGATCTGCGGTCGCGCAGTCAG GCGTATTGGATACACGAGGTTCGCCTCATGAGCGAGGTCATGGAGGAGAGAGACGTCGTCGAGGGCGTCAACGAT GCCCTGAGCAGCCGCATTGATATGCAGGCTGTGCTCAGGGACGCCGACGCTTACTCCCAAGCTGTCCTGCAACCG CTGCAGAACCTGGCGCCCGACGATGCATCGTAA |
| Gene | >Ophio5|6312 ATGGCCATCCCCTGGGACTCGTGAGACCCTCCCCCTCCCACGAAACGTGCCGTCCGTTGGCAACTAACCTTTTCA ATCCCACAGAATCCTGTCTATAGCCTTCATTATCGGCCCCATTGCCTTGGGGAAAGCCGTGACGTCGTATCGCTC CGCCCGCAACGTCTCGCGACCGCCGAAATCCGCCGTACGGCCCGTTCCGCTTCGCATCTGGCCCGCGCTCGGGCT GCTATTCCTCGTGGCCGCTTTTTATCTTGTGCAGACGCTGCCTGCGCTGGCGCCGGAGAATATCTTTGTTCGTAC GCAGAGTAGGCTGCTTACTCCTGCCGATGTCCTCTTCAACCGACTCGCGTCTTTACGGCCTGATCATGCGTTGAC GCCCCACGATGAGGCTTTACGCGCAAGGCTCGTCAATATCGAGAGTAGGCTCCTCTACTTTCAATTTGGACCCCA AGTTCTTGGAGACTGTCCGTTTTGCAACTCTGACGAGCCCGTCTTCTACTTTTACTACGCCCTGGTTGATCTGCT GCGTCCACACTTCCTTAACCTCGTCATCATAGCCCTCGTTACAGCCTCCACCTGGACCGACGTCCACGGCTCGCA GTGGCGCACCATCGCCACCCTAGCCGCGGCCTTTCTCGCTGCTGCCGATGTATTCATGGTCAAAACCTACGACTA CAAGTCCAATACCGCCTCCTTGCGGCTCGAAGACATCGACTTTTTCTTCTGGTCCATGCGATCATATCGCCTGTT CGCCCTCGCCGCCTTTGACGCTCTACTAGGCTATCTCATCTACCTGTCCTGCACAAACCGAGCATTCGCGACGCC GATTTCCGCCCCGGAGCGCGTCGACGCCCTCGCCCGCGGCCTCTTGTCTGTCAAAAGCAAGATGAGCGCCATGGG CATCGTCAGGAACACGGCTTTGCGTGACACGGATCTGCGGTCGCGCAGTCAGGCGTATTGGATACACGAGGTTCG CCTCATGAGCGAGGTCATGGAGGAGAGAGACGTCGTCGAGGGCGTCAACGATGCCCTGAGCAGCCGCATTGATAT GCAGGCTGTGCTCAGGGACGCCGACGCTTACTCCCAAGCTGTCCTGCAACCGCTGCAGAACCTGGCGCCCGACGA TGCATCGTAA |