Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|6311
Gene name
Location	scaffold_546:1728..3018
Strand	+
Gene length (bp)	1290
Transcript length (bp)	1290
Coding sequence length (bp)	1287
Protein length (aa)	429

Overview

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14388	DUF4419	Domain of unknown function (DUF4419)	6.9E-93	93	392

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5UQ60\|YL662_MIMIV	Uncharacterized protein L662 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L662 PE=4 SV=1	101	309	2.0E-15

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]

Localizations	Signals	Cytoplasm	Nucleus	Extracellular	Cell membrane	Mitochondrion	Plastid	Endoplasmic reticulum	Lysosome vacuole	Golgi apparatus	Peroxisome
Extracellular	Signal peptide	0.1753	0.0925	0.8921	0.1301	0.1455	0.0454	0.3581	0.4075	0.2403	0.0189

SignalP

SignalP signal predicted	Location	Score
Yes	1 - 21	0.999692

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	707.52	264.23	1150.82
CcL	In ants, during behavior modification	307.62	78.87	536.37
CcD	In ants, recently dead	802.27	205.46	1399.09

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.011654	yes
SC16a	CcD	0.757871	no
CcL	CcD	0.007475	yes

Orthologs

Orthofinder run ID	4
Orthogroup	87
Change Orthofinder run

Species	Protein ID
Ophiocordyceps australis 1348a (Ghana)	OphauG2\|2106
Ophiocordyceps australis 1348a (Ghana)	OphauG2\|2432
Ophiocordyceps australis 1348a (Ghana)	OphauG2\|3791
Ophiocordyceps australis 1348a (Ghana)	OphauG2\|7785
Ophiocordyceps australis map64 (Brazil)	OphauB2\|538
Ophiocordyceps australis map64 (Brazil)	OphauB2\|7106
Ophiocordyceps australis map64 (Brazil)	OphauB2\|8110
Ophiocordyceps camponoti-floridani	Ophcf2\|04348
Ophiocordyceps camponoti-floridani	Ophcf2\|06291
Ophiocordyceps camponoti-rufipedis	Ophun1\|2615
Ophiocordyceps camponoti-rufipedis	Ophun1\|3024
Ophiocordyceps kimflemingae	Ophio5\|6311 (this protein)
Ophiocordyceps kimflemingae	Ophio5\|7302
Ophiocordyceps subramaniannii	Hirsu2\|3102
Ophiocordyceps subramaniannii	Hirsu2\|9218

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus Download genbank file of locus (reverse complement) The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|6311 MRNTLLLALSGGLLSLTAAQGQEGITIWIDEDVPILPLQTDHVVHSAEELFNQSCPEEVSRYNSYHPQLLRTSYD TVHNASFENGEVFFSSSSFIRGAVEAWGQHQHLFLRPDEVWFEILTQLNAYMFKNAEKVRDIFVNHQGQENIRVA VWNDESAVDNLVTGFAYELRHRVKTPWLADWVKPGFSTTTPEDELTANVLMMGLLQQFFSYTGVLLCGLPSVTLL GTREDWEALSGKLEHLKDFGEEPTQYAEVLRPIMDGFLRSWDEPDSETTKDFWSKIVLGGKNYLCSGQTLVSGWI TGFSFWNKSGNLILTAAQRQNAERGTQLGNVKYVSRDVNLLPVSYAKVPVRMAKHPRLPPDSDVYLLAGNIGVHR TASPEGVFAEPLSGWYMYGPVDTQFEIRENSGNGEELRGISRSIDQCSLPALAS
Coding	>Ophio5\|6311 ATGCGCAACACGCTTCTGCTTGCCCTCTCCGGGGGGCTTCTCTCCCTCACCGCGGCCCAAGGCCAAGAGGGTATC ACCATCTGGATTGATGAGGACGTACCCATCCTTCCGCTCCAGACAGACCACGTCGTTCATTCTGCCGAGGAGCTT TTCAACCAGAGTTGCCCCGAAGAAGTGTCTCGCTACAACTCCTACCACCCTCAGCTGCTCAGAACGTCTTATGAT ACCGTCCACAACGCCTCATTCGAAAACGGCGAGGTTTTCTTCTCCTCGTCTAGCTTCATTCGCGGCGCTGTTGAG GCCTGGGGTCAGCATCAGCACTTATTCTTGCGTCCCGACGAGGTCTGGTTCGAGATCCTGACCCAGTTGAACGCC TACATGTTCAAAAACGCCGAAAAGGTTCGCGACATCTTTGTCAACCATCAGGGCCAGGAAAACATACGCGTCGCC GTCTGGAACGATGAGTCGGCTGTCGATAATTTGGTTACCGGCTTCGCCTACGAACTCCGACACAGAGTCAAGACG CCATGGCTCGCCGATTGGGTCAAGCCTGGCTTCAGTACCACCACTCCCGAGGACGAACTCACTGCCAATGTGCTC ATGATGGGTCTCTTGCAACAGTTTTTCAGTTACACTGGCGTCCTACTCTGCGGCCTTCCGTCTGTCACCCTGCTC GGCACCAGGGAGGATTGGGAGGCCCTGTCGGGCAAGCTGGAGCATCTCAAGGATTTTGGTGAAGAGCCGACGCAA TATGCCGAGGTGCTGCGGCCCATCATGGACGGTTTCCTTCGCTCTTGGGACGAGCCGGACTCCGAGACTACCAAG GATTTCTGGTCAAAGATCGTTCTTGGCGGCAAAAACTATCTTTGTAGCGGACAGACTTTGGTGTCCGGCTGGATC ACCGGCTTTTCCTTCTGGAACAAATCGGGCAACCTCATCTTGACCGCGGCCCAGCGCCAAAATGCGGAACGCGGA ACACAGCTCGGCAATGTCAAGTATGTCTCTCGGGACGTCAATCTGCTACCCGTCAGCTATGCCAAGGTTCCCGTC CGTATGGCTAAACATCCGAGGCTACCTCCGGACTCGGATGTTTACCTACTGGCCGGCAATATTGGCGTTCACAGG ACCGCGAGCCCCGAAGGCGTCTTTGCAGAACCACTCAGCGGCTGGTACATGTATGGCCCCGTGGATACTCAGTTT GAGATCAGGGAGAATTCTGGGAATGGCGAAGAGCTTCGTGGTATATCGAGAAGCATCGACCAGTGTTCACTGCCT GCACTCGCATCG
Transcript	>Ophio5\|6311 ATGCGCAACACGCTTCTGCTTGCCCTCTCCGGGGGGCTTCTCTCCCTCACCGCGGCCCAAGGCCAAGAGGGTATC ACCATCTGGATTGATGAGGACGTACCCATCCTTCCGCTCCAGACAGACCACGTCGTTCATTCTGCCGAGGAGCTT TTCAACCAGAGTTGCCCCGAAGAAGTGTCTCGCTACAACTCCTACCACCCTCAGCTGCTCAGAACGTCTTATGAT ACCGTCCACAACGCCTCATTCGAAAACGGCGAGGTTTTCTTCTCCTCGTCTAGCTTCATTCGCGGCGCTGTTGAG GCCTGGGGTCAGCATCAGCACTTATTCTTGCGTCCCGACGAGGTCTGGTTCGAGATCCTGACCCAGTTGAACGCC TACATGTTCAAAAACGCCGAAAAGGTTCGCGACATCTTTGTCAACCATCAGGGCCAGGAAAACATACGCGTCGCC GTCTGGAACGATGAGTCGGCTGTCGATAATTTGGTTACCGGCTTCGCCTACGAACTCCGACACAGAGTCAAGACG CCATGGCTCGCCGATTGGGTCAAGCCTGGCTTCAGTACCACCACTCCCGAGGACGAACTCACTGCCAATGTGCTC ATGATGGGTCTCTTGCAACAGTTTTTCAGTTACACTGGCGTCCTACTCTGCGGCCTTCCGTCTGTCACCCTGCTC GGCACCAGGGAGGATTGGGAGGCCCTGTCGGGCAAGCTGGAGCATCTCAAGGATTTTGGTGAAGAGCCGACGCAA TATGCCGAGGTGCTGCGGCCCATCATGGACGGTTTCCTTCGCTCTTGGGACGAGCCGGACTCCGAGACTACCAAG GATTTCTGGTCAAAGATCGTTCTTGGCGGCAAAAACTATCTTTGTAGCGGACAGACTTTGGTGTCCGGCTGGATC ACCGGCTTTTCCTTCTGGAACAAATCGGGCAACCTCATCTTGACCGCGGCCCAGCGCCAAAATGCGGAACGCGGA ACACAGCTCGGCAATGTCAAGTATGTCTCTCGGGACGTCAATCTGCTACCCGTCAGCTATGCCAAGGTTCCCGTC CGTATGGCTAAACATCCGAGGCTACCTCCGGACTCGGATGTTTACCTACTGGCCGGCAATATTGGCGTTCACAGG ACCGCGAGCCCCGAAGGCGTCTTTGCAGAACCACTCAGCGGCTGGTACATGTATGGCCCCGTGGATACTCAGTTT GAGATCAGGGAGAATTCTGGGAATGGCGAAGAGCTTCGTGGTATATCGAGAAGCATCGACCAGTGTTCACTGCCT GCACTCGCATCGTAG
Gene	>Ophio5\|6311 ATGCGCAACACGCTTCTGCTTGCCCTCTCCGGGGGGCTTCTCTCCCTCACCGCGGCCCAAGGCCAAGAGGGTATC ACCATCTGGATTGATGAGGACGTACCCATCCTTCCGCTCCAGACAGACCACGTCGTTCATTCTGCCGAGGAGCTT TTCAACCAGAGTTGCCCCGAAGAAGTGTCTCGCTACAACTCCTACCACCCTCAGCTGCTCAGAACGTCTTATGAT ACCGTCCACAACGCCTCATTCGAAAACGGCGAGGTTTTCTTCTCCTCGTCTAGCTTCATTCGCGGCGCTGTTGAG GCCTGGGGTCAGCATCAGCACTTATTCTTGCGTCCCGACGAGGTCTGGTTCGAGATCCTGACCCAGTTGAACGCC TACATGTTCAAAAACGCCGAAAAGGTTCGCGACATCTTTGTCAACCATCAGGGCCAGGAAAACATACGCGTCGCC GTCTGGAACGATGAGTCGGCTGTCGATAATTTGGTTACCGGCTTCGCCTACGAACTCCGACACAGAGTCAAGACG CCATGGCTCGCCGATTGGGTCAAGCCTGGCTTCAGTACCACCACTCCCGAGGACGAACTCACTGCCAATGTGCTC ATGATGGGTCTCTTGCAACAGTTTTTCAGTTACACTGGCGTCCTACTCTGCGGCCTTCCGTCTGTCACCCTGCTC GGCACCAGGGAGGATTGGGAGGCCCTGTCGGGCAAGCTGGAGCATCTCAAGGATTTTGGTGAAGAGCCGACGCAA TATGCCGAGGTGCTGCGGCCCATCATGGACGGTTTCCTTCGCTCTTGGGACGAGCCGGACTCCGAGACTACCAAG GATTTCTGGTCAAAGATCGTTCTTGGCGGCAAAAACTATCTTTGTAGCGGACAGACTTTGGTGTCCGGCTGGATC ACCGGCTTTTCCTTCTGGAACAAATCGGGCAACCTCATCTTGACCGCGGCCCAGCGCCAAAATGCGGAACGCGGA ACACAGCTCGGCAATGTCAAGTATGTCTCTCGGGACGTCAATCTGCTACCCGTCAGCTATGCCAAGGTTCCCGTC CGTATGGCTAAACATCCGAGGCTACCTCCGGACTCGGATGTTTACCTACTGGCCGGCAATATTGGCGTTCACAGG ACCGCGAGCCCCGAAGGCGTCTTTGCAGAACCACTCAGCGGCTGGTACATGTATGGCCCCGTGGATACTCAGTTT GAGATCAGGGAGAATTCTGGGAATGGCGAAGAGCTTCGTGGTATATCGAGAAGCATCGACCAGTGTTCACTGCCT GCACTCGCATCGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail