© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|6285 |
| Gene name | |
| Location | scaffold_541:8271..10616 |
| Strand | - |
| Gene length (bp) | 2345 |
| Transcript length (bp) | 1752 |
| Coding sequence length (bp) | 1749 |
| Protein length (aa) | 583 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00487 | FA_desaturase | Fatty acid desaturase | 8.8E-31 | 265 | 542 |
| PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain | 4.3E-08 | 50 | 110 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6CMK7|SLD1_KLULA | Delta 8-(E)-sphingolipid desaturase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SLD PE=3 SV=1 | 38 | 579 | 7.0E-161 |
| sp|Q8NKG8|SLD1_KLULC | Delta 8-(E)-sphingolipid desaturase OS=Kluyveromyces lactis GN=SLD PE=1 SV=1 | 38 | 579 | 3.0E-159 |
| sp|Q8NKG9|SLD1_LACK1 | Delta 8-(E)-sphingolipid desaturase OS=Lachancea kluyveri (strain ATCC 58438 / CBS 3082 / CCRC 21498 / NBRC 1685 / JCM 7257 / NCYC 543 / NRRL Y-12651) GN=SLD PE=1 SV=1 | 37 | 579 | 4.0E-155 |
| sp|Q5AEK8|SLD1_CANAL | Delta 8-(E)-sphingolipid desaturase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SLD1 PE=1 SV=1 | 38 | 572 | 2.0E-149 |
| sp|C4QVU3|SLD1_PICPG | Delta 8-(E)-sphingolipid desaturase OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=PAS_chr1-1_0013 PE=3 SV=1 | 39 | 581 | 6.0E-145 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6CMK7|SLD1_KLULA | Delta 8-(E)-sphingolipid desaturase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SLD PE=3 SV=1 | 38 | 579 | 7.0E-161 |
| sp|Q8NKG8|SLD1_KLULC | Delta 8-(E)-sphingolipid desaturase OS=Kluyveromyces lactis GN=SLD PE=1 SV=1 | 38 | 579 | 3.0E-159 |
| sp|Q8NKG9|SLD1_LACK1 | Delta 8-(E)-sphingolipid desaturase OS=Lachancea kluyveri (strain ATCC 58438 / CBS 3082 / CCRC 21498 / NBRC 1685 / JCM 7257 / NCYC 543 / NRRL Y-12651) GN=SLD PE=1 SV=1 | 37 | 579 | 4.0E-155 |
| sp|Q5AEK8|SLD1_CANAL | Delta 8-(E)-sphingolipid desaturase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SLD1 PE=1 SV=1 | 38 | 572 | 2.0E-149 |
| sp|C4QVU3|SLD1_PICPG | Delta 8-(E)-sphingolipid desaturase OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=PAS_chr1-1_0013 PE=3 SV=1 | 39 | 581 | 6.0E-145 |
| sp|Q43469|SLD1_HELAN | Delta(8)-fatty-acid desaturase OS=Helianthus annuus GN=sld1 PE=1 SV=1 | 129 | 563 | 1.0E-61 |
| sp|Q3EBF7|SLD2_ARATH | Delta(8)-fatty-acid desaturase 2 OS=Arabidopsis thaliana GN=SLD2 PE=1 SV=1 | 218 | 563 | 4.0E-58 |
| sp|Q9FR82|SLD1_BOROF | Delta(8)-fatty-acid desaturase OS=Borago officinalis GN=sld1 PE=1 SV=1 | 167 | 563 | 1.0E-53 |
| sp|Q9ZRP7|SLD1_ARATH | Delta(8)-fatty-acid desaturase 1 OS=Arabidopsis thaliana GN=SLD1 PE=1 SV=1 | 269 | 563 | 1.0E-50 |
| sp|Q23221|FAT3_CAEEL | Delta(6)-fatty-acid desaturase fat-3 OS=Caenorhabditis elegans GN=fat-3 PE=2 SV=2 | 164 | 569 | 4.0E-42 |
| sp|G5EG11|FAT4_CAEEL | Delta(5) fatty acid desaturase fat-4 OS=Caenorhabditis elegans GN=fat-4 PE=2 SV=1 | 226 | 575 | 2.0E-30 |
| sp|Q9SWQ9|SLD1_EUGGR | Delta(8)-fatty-acid desaturase OS=Euglena gracilis GN=efd1 PE=1 SV=1 | 192 | 541 | 1.0E-24 |
| sp|Q4G2T3|DESAT_THAPS | Sphingolipid 10-desaturase OS=Thalassiosira pseudonana GN=desA PE=1 SV=2 | 29 | 565 | 2.0E-19 |
| sp|Q9JJE7|FADS3_MOUSE | Fatty acid desaturase 3 OS=Mus musculus GN=Fads3 PE=2 SV=2 | 207 | 562 | 5.0E-17 |
| sp|Q8K1P9|FADS3_RAT | Fatty acid desaturase 3 OS=Rattus norvegicus GN=Fads3 PE=2 SV=1 | 207 | 562 | 3.0E-16 |
| sp|Q0VAX3|FS2P1_MOUSE | Fatty acid desaturase 2-like protein FADS2P1 OS=Mus musculus GN=Fads2p1 PE=2 SV=1 | 209 | 541 | 1.0E-15 |
| sp|A4KDP0|D5FAD_REBSA | Acyl-lipid (8-3)-desaturase OS=Rebecca salina GN=D5Des PE=1 SV=1 | 218 | 561 | 2.0E-15 |
| sp|Q9DEX7|FADS2_DANRE | Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE=2 SV=1 | 209 | 562 | 2.0E-15 |
| sp|Q9Y5Q0|FADS3_HUMAN | Fatty acid desaturase 3 OS=Homo sapiens GN=FADS3 PE=2 SV=1 | 207 | 562 | 3.0E-15 |
| sp|A4KDP1|D8FAD_REBSA | Acyl-lipid 8-desaturase OS=Rebecca salina GN=D8Des PE=2 SV=1 | 197 | 541 | 3.0E-15 |
| sp|A4IFP3|FADS3_BOVIN | Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=2 SV=1 | 207 | 546 | 2.0E-14 |
| sp|Q9Z0R9|FADS2_MOUSE | Fatty acid desaturase 2 OS=Mus musculus GN=Fads2 PE=1 SV=1 | 209 | 542 | 2.0E-13 |
| sp|Q9Z122|FADS2_RAT | Fatty acid desaturase 2 OS=Rattus norvegicus GN=Fads2 PE=2 SV=1 | 209 | 542 | 5.0E-13 |
| sp|A4UVI1|FADS1_PAPAN | Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 PE=1 SV=1 | 207 | 542 | 6.0E-13 |
| sp|Q8S3C1|D5FAD_THRSP | Acyl-lipid (8-3)-desaturase OS=Thraustochytrium sp. GN=Fad5 PE=1 SV=1 | 202 | 541 | 9.0E-10 |
| sp|A8MWK0|FS2P1_HUMAN | Putative fatty acid desaturase 2-like protein FADS2P1 OS=Homo sapiens GN=FADS2P1 PE=5 SV=2 | 282 | 541 | 2.0E-07 |
| sp|Q08871|LLCD_SYNY3 | Acyl-CoA 6-desaturase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=des6 PE=4 SV=1 | 283 | 544 | 9.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 258 | 280 | 22 |
| 2 | 295 | 317 | 22 |
| 3 | 379 | 401 | 22 |
| 4 | 414 | 436 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 48.14 | 25.96 | 70.32 |
| CcL | In ants, during behavior modification | 304.31 | 123.50 | 485.13 |
| CcD | In ants, recently dead | 239.49 | 111.83 | 367.15 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.404331 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6285 MEESSTSWGADAYPRPELPSFFLFSFVGQCSPVMDRDQVLSQAAVDALIADGQAIVIFRDYVLRLDSWLARHPGG SLAILHMIGRDATDEITAYHAATTLRTMSAFRIGRKPPGLWINRTPPIRGRSLPSLDTTSSLSDSSSLDGDTSSS SSTAFTSPSISSHGDDKVDNVLDLVRKRRNLTVPTCSSPARFVDSAVQSGVDKDLRDYPSLDPAVQQDIVGKYRL LHQKIVDEGLYKCPYQQYAKELARYLTLLSTSLVALHHAWYVTSALLLGLFWHQIMFTAHDAGHRAITQIFAVDT LIGMFIGDFCCGLSIGWWKSSHNVHHLVTNQPEHDPDIQNVPLFAICPSFFKSISSTYYENFVMAWDAAADFLVP YQKYTYYPVMAIARFNLYILSWLHVLSSKSPSLAGTKVWWIRPVEVAFMCCYWFLFGYCLLWRSLPTWTTRVVYV LVSHIVTMPLHVQINLSHWGMSTSDLGESESFAQRQLRTTMDIDCPPWLDFIHGGLQFQAVHHLFPRLPRHNLRR AQALVKEFCQSTAIPYSIFTFADGNRKVLGRLQEVSDQLAVLASCQKSMAESGTCGLH |
| Coding | >Ophio5|6285 ATGGAAGAGTCTTCCACGTCATGGGGCGCAGATGCCTACCCAAGACCTGAGCTTCCTTCCTTCTTCCTCTTCAGC TTTGTGGGCCAATGCTCGCCCGTGATGGATCGCGACCAGGTCCTCTCGCAAGCAGCCGTCGACGCCTTGATTGCC GACGGTCAGGCCATCGTCATCTTCCGAGACTACGTCTTGCGTCTCGACTCATGGCTCGCCAGGCATCCCGGAGGC TCTCTGGCGATACTACACATGATTGGTCGTGATGCAACCGACGAGATTACAGCATACCATGCCGCCACTACCCTG CGCACCATGTCCGCCTTTCGCATCGGCCGAAAGCCACCCGGTCTCTGGATCAACAGGACGCCACCCATCAGGGGA CGCTCGCTCCCCAGCCTCGACACCACCTCTTCCCTCTCAGACTCATCTTCGCTCGACGGCGACACGAGTAGCAGC TCCTCGACGGCATTCACCTCTCCGTCCATCAGCTCGCATGGCGACGACAAGGTCGACAATGTCCTCGACCTGGTT CGGAAACGAAGGAACCTCACCGTCCCGACATGCTCGAGCCCTGCCCGCTTCGTTGACTCGGCCGTCCAGTCCGGC GTCGACAAGGACCTCCGCGACTACCCATCGCTCGACCCTGCCGTGCAACAGGACATTGTGGGCAAATACCGCCTG CTGCACCAGAAAATCGTCGACGAGGGCCTGTACAAGTGTCCGTACCAGCAGTATGCAAAAGAGCTGGCCCGCTAT CTCACCTTGTTGTCCACCTCTCTCGTCGCTCTTCACCACGCCTGGTACGTGACCTCGGCGCTGCTGCTGGGGCTC TTCTGGCACCAAATCATGTTCACCGCCCACGACGCCGGTCACCGAGCCATCACCCAAATCTTCGCCGTCGATACC CTCATCGGCATGTTCATTGGCGACTTCTGCTGCGGCCTCTCCATTGGTTGGTGGAAGAGCAGTCACAACGTCCAC CACCTCGTCACCAATCAACCTGAACACGACCCCGACATCCAGAACGTCCCTCTCTTCGCCATTTGTCCTTCCTTT TTCAAGTCCATCAGCTCGACGTACTACGAGAACTTTGTCATGGCTTGGGACGCCGCCGCCGACTTCCTGGTCCCC TACCAAAAGTATACGTACTATCCGGTCATGGCCATTGCCCGCTTCAACCTCTATATCCTGTCGTGGCTGCACGTC CTCTCGTCCAAGTCGCCGTCGTTGGCCGGCACCAAGGTCTGGTGGATCCGTCCTGTCGAGGTGGCCTTCATGTGC TGCTACTGGTTCCTCTTTGGCTACTGTCTGCTCTGGCGCTCGCTGCCGACGTGGACGACGCGCGTCGTCTACGTG CTCGTGTCGCACATCGTCACCATGCCCCTGCACGTCCAGATCAACCTGTCTCACTGGGGTATGTCGACGTCGGAC CTGGGCGAGTCGGAATCCTTTGCCCAGCGACAGCTACGAACCACGATGGACATCGACTGCCCCCCCTGGCTCGAC TTCATCCACGGAGGACTGCAGTTCCAGGCAGTCCACCATCTGTTTCCCCGCCTGCCGCGGCACAACCTCCGCAGG GCGCAGGCCCTGGTCAAGGAGTTTTGCCAGTCGACGGCCATCCCTTACTCCATCTTCACCTTTGCAGATGGAAAC CGCAAGGTGCTTGGCCGGCTGCAAGAGGTGAGCGACCAGCTCGCCGTGCTCGCCAGCTGCCAAAAGTCCATGGCC GAGAGCGGGACGTGCGGGTTGCAC |
| Transcript | >Ophio5|6285 ATGGAAGAGTCTTCCACGTCATGGGGCGCAGATGCCTACCCAAGACCTGAGCTTCCTTCCTTCTTCCTCTTCAGC TTTGTGGGCCAATGCTCGCCCGTGATGGATCGCGACCAGGTCCTCTCGCAAGCAGCCGTCGACGCCTTGATTGCC GACGGTCAGGCCATCGTCATCTTCCGAGACTACGTCTTGCGTCTCGACTCATGGCTCGCCAGGCATCCCGGAGGC TCTCTGGCGATACTACACATGATTGGTCGTGATGCAACCGACGAGATTACAGCATACCATGCCGCCACTACCCTG CGCACCATGTCCGCCTTTCGCATCGGCCGAAAGCCACCCGGTCTCTGGATCAACAGGACGCCACCCATCAGGGGA CGCTCGCTCCCCAGCCTCGACACCACCTCTTCCCTCTCAGACTCATCTTCGCTCGACGGCGACACGAGTAGCAGC TCCTCGACGGCATTCACCTCTCCGTCCATCAGCTCGCATGGCGACGACAAGGTCGACAATGTCCTCGACCTGGTT CGGAAACGAAGGAACCTCACCGTCCCGACATGCTCGAGCCCTGCCCGCTTCGTTGACTCGGCCGTCCAGTCCGGC GTCGACAAGGACCTCCGCGACTACCCATCGCTCGACCCTGCCGTGCAACAGGACATTGTGGGCAAATACCGCCTG CTGCACCAGAAAATCGTCGACGAGGGCCTGTACAAGTGTCCGTACCAGCAGTATGCAAAAGAGCTGGCCCGCTAT CTCACCTTGTTGTCCACCTCTCTCGTCGCTCTTCACCACGCCTGGTACGTGACCTCGGCGCTGCTGCTGGGGCTC TTCTGGCACCAAATCATGTTCACCGCCCACGACGCCGGTCACCGAGCCATCACCCAAATCTTCGCCGTCGATACC CTCATCGGCATGTTCATTGGCGACTTCTGCTGCGGCCTCTCCATTGGTTGGTGGAAGAGCAGTCACAACGTCCAC CACCTCGTCACCAATCAACCTGAACACGACCCCGACATCCAGAACGTCCCTCTCTTCGCCATTTGTCCTTCCTTT TTCAAGTCCATCAGCTCGACGTACTACGAGAACTTTGTCATGGCTTGGGACGCCGCCGCCGACTTCCTGGTCCCC TACCAAAAGTATACGTACTATCCGGTCATGGCCATTGCCCGCTTCAACCTCTATATCCTGTCGTGGCTGCACGTC CTCTCGTCCAAGTCGCCGTCGTTGGCCGGCACCAAGGTCTGGTGGATCCGTCCTGTCGAGGTGGCCTTCATGTGC TGCTACTGGTTCCTCTTTGGCTACTGTCTGCTCTGGCGCTCGCTGCCGACGTGGACGACGCGCGTCGTCTACGTG CTCGTGTCGCACATCGTCACCATGCCCCTGCACGTCCAGATCAACCTGTCTCACTGGGGTATGTCGACGTCGGAC CTGGGCGAGTCGGAATCCTTTGCCCAGCGACAGCTACGAACCACGATGGACATCGACTGCCCCCCCTGGCTCGAC TTCATCCACGGAGGACTGCAGTTCCAGGCAGTCCACCATCTGTTTCCCCGCCTGCCGCGGCACAACCTCCGCAGG GCGCAGGCCCTGGTCAAGGAGTTTTGCCAGTCGACGGCCATCCCTTACTCCATCTTCACCTTTGCAGATGGAAAC CGCAAGGTGCTTGGCCGGCTGCAAGAGGTGAGCGACCAGCTCGCCGTGCTCGCCAGCTGCCAAAAGTCCATGGCC GAGAGCGGGACGTGCGGGTTGCACTGA |
| Gene | >Ophio5|6285 ATGGAAGAGTCGTACGACTCAGTACCTACCTACCTACCTATCTGCCTATCAGTTCAGTAAAAAGGTAGGTAAGTT CCACGTCATGGGGCGCAGATGCCTACCCAAGACCTGAGCTTCCTTCCTTCTTCCTCTTCAGCTTTGTGGGCCAAT GGTGAAAAATCCTTTCTTGTCCTCCCATCGAGCATCGCCTTTTGACTTTGACCTTGTCTTCTTCTCCTCCCTGTT CTTCTACTCCTCCTCCTCCTCCCCTTTCTTCCTCGACTCCGTCTTCGTCTTGTTCTTCGTCTTCATCTTCATCTT CGTCCTCGTCTTCCTCTTTCTTCATATACTGACACGACATCCTTCCTTCCTTCGCCTCCCTCGGGCTCTTCCACA GCTCGCCCGTGATGGATCGCGACCAGGTCCTCTCGCAAGCAGCCGTCGACGCCTTGATTGCCGACGGTCAGGCCA TCGTCATCTTCCGAGACTACGTCTTGCGTCTCGACTCATGGCTCGCCAGGCATCCCGGAGGCTCTCTGGCGATAC TACACATGATTGGTCGTGATGCAACCGACGAGATTACAGCGTAAATGGCCCGCTCGTCAGTCATGCCTTCGGTGC GCTGCAGACAAGAGAAAAAAAAAGGAAGGGAGGGGAAAAAGAAAAAAAAAGTCTTTAGAAACGGACCGGTCCGTA CTGAGCTTAATGGGCTCAAACGCGGCGCTAGACCATGATGAAACATGCATGCGAGCGATTCGGCTGACGGTCTGA ACTCGCAGATACCATGCCGCCACTACCCTGCGCACCATGTCCGCCTTTCGCATCGGCCGAAAGCCACCCGGTCTC TGGATCAACAGGACGCCACCCATCAGGGGACGCTCGCTCCCCAGCCTCGACACCACCTCTTCCCTCTCAGACTCA TCTTCGCTCGACGGCGACACGAGTAGCAGCTCCTCGACGGCATTCACCTCTCCGTCCATCAGCTCGCATGGCGAC GACAAGGTCGACAATGTCCTCGACCTGGTTCGGAAACGAAGGAACCTCACCGTCCCGACATGCTCGAGCCCTGCC CGCTTCGTTGACTCGGCCGTCCAGTCCGGCGTCGACAAGGACCTCCGCGACTACCCATCGCTCGACCCTGCCGTG CAACAGGACATTGTGGGCAAATACCGCCTGCTGCACCAGAAAATCGTCGACGAGGGCCTGTACAAGTGTCCGTAC CAGCAGTATGCAAAAGAGCTGGCCCGCTATCTCACCTTGTTGTCCACCTCTCTCGTCGCTCTTCACCACGCCTGG TACGTGACCTCGGCGCTGCTGCTGGGGCTCTTCTGGGTAAGTTGCCTCCTCGTGGGTTGAAGAGTTGTAGCTCAT GTCTTGCTCTTGCTCAGCACCAAATCATGTTCACCGCCCACGACGCCGGTCACCGAGCCATCACCCAAATCTTCG CCGTCGATACCCTCATCGGCATGTTCATTGGCGACTTCTGCTGCGGCCTCTCCATTGGTTGGTGGAAGAGCAGTC ACAACGTCCACCACCTCGTCACCAATCAACCTGTCGGTCCTCGCCCGCTGCCTTGGCTCCCATGGTGCTGCTGAC ACGCCGCGTTGCAGGAACACGACCCCGACATCCAGAACGTCCCTCTCTTCGCCATTTGTCCTTCCTTTTTCAAGT CCATCAGCTCGACGTACTACGAGAACTTTGTCATGGCTTGGGACGCCGCCGCCGACTTCCTGGTCCCCTACCAAA AGTATACGTACTATCCGGTCATGGCCATTGCCCGCTTCAACCTCTATATCCTGTCGTGGCTGCACGTCCTCTCGT CCAAGTCGCCGTCGTTGGCCGGCACCAAGGTCTGGTGGATCCGTCCTGTCGAGGTGGCCTTCATGTGCTGCTACT GGTTCCTCTTTGGCTACTGTCTGCTCTGGCGCTCGCTGCCGACGTGGACGACGCGCGTCGTCTACGTGCTCGTGT CGCACATCGTCACCATGCCCCTGCACGTCCAGATCAACCTGTCTCACTGGGGTATGTCGACGTCGGACCTGGGCG AGTCGGAATCCTTTGCCCAGCGACAGCTACGAACCACGATGGACATCGACTGCCCCCCCTGGCTCGACTTCATCC ACGGAGGACTGCAGTTCCAGGCAGTCCACCATCTGTTTCCCCGCCTGCCGCGGCACAACCTCCGCAGGGCGCAGG CCCTGGTCAAGGAGTTTTGCCAGTCGACGGCCATCCCTTACTCCATCTTCACCTTTGCAGATGGAAACCGCAAGG TGCTTGGCCGGCTGCAAGAGGTGAGCGACCAGCTCGCCGTGCTCGCCAGCTGCCAAAAGTCCATGGCCGAGAGCG GGACGTGCGGGTTGCACTGA |