Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6281
Gene name
Locationscaffold_540:9085..10628
Strand+
Gene length (bp)1543
Transcript length (bp)1389
Coding sequence length (bp)1386
Protein length (aa) 462

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00494 SQS_PSY Squalene/phytoene synthase 8.0E-37 48 322

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7S4Z6|FDFT_NEUCR Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 5 458 0.0E+00
sp|Q9Y753|FDFT_YARLI Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 7 435 2.0E-127
sp|O74165|FDFT_CYBJA Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 8 380 2.0E-120
sp|P36596|FDFT_SCHPO Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 12 382 4.0E-120
sp|P78589|FDFT_CANAX Squalene synthase OS=Candida albicans GN=ERG9 PE=3 SV=1 7 384 1.0E-112
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Swissprot ID Swissprot Description Start End E-value
sp|Q7S4Z6|FDFT_NEUCR Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 5 458 0.0E+00
sp|Q9Y753|FDFT_YARLI Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 7 435 2.0E-127
sp|O74165|FDFT_CYBJA Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 8 380 2.0E-120
sp|P36596|FDFT_SCHPO Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 12 382 4.0E-120
sp|P78589|FDFT_CANAX Squalene synthase OS=Candida albicans GN=ERG9 PE=3 SV=1 7 384 1.0E-112
sp|Q752X9|FDFT_ASHGO Squalene synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG9 PE=3 SV=1 1 379 9.0E-112
sp|P29704|FDFT_YEAST Squalene synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG9 PE=1 SV=2 8 379 1.0E-111
sp|Q92459|FDFT_USTMA Squalene synthase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ERG9 PE=3 SV=2 1 380 5.0E-106
sp|Q9HGZ6|FDFT_CANGA Squalene synthase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG9 PE=3 SV=2 1 379 2.0E-105
sp|P37268|FDFT_HUMAN Squalene synthase OS=Homo sapiens GN=FDFT1 PE=1 SV=1 1 378 6.0E-88
sp|Q5R6U3|FDFT_PONAB Squalene synthase OS=Pongo abelii GN=FDFT1 PE=2 SV=1 1 378 6.0E-88
sp|Q02769|FDFT_RAT Squalene synthase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1 1 360 1.0E-85
sp|P53798|FDFT_MOUSE Squalene synthase OS=Mus musculus GN=Fdft1 PE=1 SV=2 1 360 3.0E-85
sp|Q32KR6|FDFT_BOVIN Squalene synthase OS=Bos taurus GN=FDFT1 PE=2 SV=1 1 378 4.0E-85
sp|Q9SDW9|BSS_BOTBR Squalene synthase OS=Botryococcus braunii GN=BSS PE=1 SV=1 41 353 3.0E-70
sp|P53799|FDFT_ARATH Squalene synthase OS=Arabidopsis thaliana GN=SQS1 PE=1 SV=1 41 420 3.0E-69
sp|P53800|FDFT_NICBE Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1 41 402 2.0E-67
sp|Q54DR1|FDFT_DICDI Squalene synthase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1 7 360 2.0E-63
sp|G0Y287|BOSS_BOTBR Botryococcus squalene synthase OS=Botryococcus braunii GN=SSL-2 PE=1 SV=1 3 353 1.0E-61
sp|G0Y288|BOCS_BOTBR Botryococcene synthase OS=Botryococcus braunii GN=SSL-3 PE=2 SV=1 7 367 4.0E-53
sp|G0Y286|PSDS_BOTBR Presqualene diphosphate synthase OS=Botryococcus braunii GN=SSL-1 PE=1 SV=1 41 356 2.0E-48
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GO

GO Term Description Terminal node
GO:0009058 biosynthetic process Yes
GO:0008152 metabolic process No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 29 0.45

Transmembrane Domains

Domain # Start End Length
1 408 430 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6281
MGVVYYLLHPYQLRSIIQWKLWHNPVHQRDLASESETLRECFRFLDMTSRSFAAVIQELDHELLVPVTLFYLVLR
GLDTIEDDMTIPVAEKVGYLQNFHLTMDQDGWQFHESNEKDRELLAKFDVVIAELKKIKPPYSEIIHDIARKMGN
GMADYVQNTKMKEDGLQTIEEYELYCHYVAGLVGEGLTRLFVSSKLGNPKLLERPSLTESMGQLLQKTNIIRDVH
EDWQDGRRWYPKEIWSKHVDEWEHMFDAGHRQQAVNCVSEMVLDALKHVEECIFYMAGMREQSVFNFVVIPQTMA
VATLELVFRNPAILERNIKITKGDACQIMLESTQNLLTACNVFRRYTRRIQAKNDPRDPNYLAISVRCAKIEQFI
ETLYPRQDAGKLEHTDANRPQKEPAMSSGETFMLFAIVTACLLVVSGIMVGAAWLMGARFPIMSDLSQLTGALFS
GPKAVDGGRDEL
Coding >Ophio5|6281
ATGGGCGTCGTCTACTACTTACTGCACCCGTACCAGCTGCGTTCCATCATCCAATGGAAGCTCTGGCACAACCCC
GTGCACCAGCGCGACCTGGCCTCCGAGTCGGAAACGCTCAGAGAATGCTTCCGCTTTCTCGACATGACGAGCCGC
AGCTTTGCGGCCGTCATCCAGGAACTCGATCATGAGCTCCTTGTGCCCGTTACCCTTTTCTACCTCGTACTGCGC
GGCCTTGACACGATTGAAGACGACATGACGATACCGGTCGCGGAAAAGGTCGGCTACCTGCAAAACTTTCATCTT
ACCATGGACCAGGACGGTTGGCAATTCCATGAAAGCAATGAAAAGGACCGCGAGTTGCTAGCAAAATTTGACGTC
GTTATCGCCGAGCTGAAAAAGATCAAACCACCTTACTCGGAAATCATCCATGACATTGCCCGCAAGATGGGCAAC
GGCATGGCCGACTACGTGCAAAACACAAAGATGAAAGAAGACGGCCTGCAGACGATAGAAGAGTACGAGTTATAC
TGCCACTACGTTGCCGGCCTCGTCGGCGAGGGGCTGACGCGGCTCTTCGTCTCGTCGAAGCTCGGCAACCCCAAG
CTGCTGGAACGGCCGTCACTGACCGAGTCCATGGGCCAGTTACTGCAAAAAACCAACATCATCCGCGACGTTCAC
GAGGACTGGCAGGACGGCAGGCGGTGGTATCCCAAGGAGATTTGGAGCAAGCACGTCGACGAATGGGAGCACATG
TTCGATGCTGGCCATCGCCAACAGGCCGTCAACTGCGTGTCGGAAATGGTGCTCGATGCGCTGAAGCACGTCGAG
GAGTGCATCTTCTACATGGCCGGCATGCGGGAGCAGAGCGTCTTTAACTTTGTCGTCATCCCGCAAACCATGGCT
GTTGCCACTCTGGAGCTCGTCTTCCGCAATCCGGCCATACTGGAGAGGAACATCAAGATTACCAAGGGAGACGCC
TGCCAGATTATGCTCGAGTCAACGCAAAACCTCTTGACCGCCTGCAACGTCTTCCGTAGGTACACACGACGGATA
CAGGCCAAGAACGACCCTCGCGATCCAAACTATTTGGCTATCAGCGTGCGCTGCGCCAAGATTGAGCAGTTCATC
GAAACGCTCTATCCGCGGCAAGATGCTGGCAAACTCGAGCATACGGACGCCAATCGTCCCCAGAAGGAGCCGGCA
ATGAGCTCGGGTGAGACATTTATGCTGTTCGCCATTGTCACGGCCTGCCTGCTCGTCGTTTCGGGCATCATGGTT
GGGGCGGCGTGGCTCATGGGTGCTCGGTTTCCTATCATGTCGGACCTCTCGCAGCTTACGGGAGCGCTGTTCTCG
GGTCCAAAAGCCGTCGACGGCGGACGCGACGAGCTC
Transcript >Ophio5|6281
ATGGGCGTCGTCTACTACTTACTGCACCCGTACCAGCTGCGTTCCATCATCCAATGGAAGCTCTGGCACAACCCC
GTGCACCAGCGCGACCTGGCCTCCGAGTCGGAAACGCTCAGAGAATGCTTCCGCTTTCTCGACATGACGAGCCGC
AGCTTTGCGGCCGTCATCCAGGAACTCGATCATGAGCTCCTTGTGCCCGTTACCCTTTTCTACCTCGTACTGCGC
GGCCTTGACACGATTGAAGACGACATGACGATACCGGTCGCGGAAAAGGTCGGCTACCTGCAAAACTTTCATCTT
ACCATGGACCAGGACGGTTGGCAATTCCATGAAAGCAATGAAAAGGACCGCGAGTTGCTAGCAAAATTTGACGTC
GTTATCGCCGAGCTGAAAAAGATCAAACCACCTTACTCGGAAATCATCCATGACATTGCCCGCAAGATGGGCAAC
GGCATGGCCGACTACGTGCAAAACACAAAGATGAAAGAAGACGGCCTGCAGACGATAGAAGAGTACGAGTTATAC
TGCCACTACGTTGCCGGCCTCGTCGGCGAGGGGCTGACGCGGCTCTTCGTCTCGTCGAAGCTCGGCAACCCCAAG
CTGCTGGAACGGCCGTCACTGACCGAGTCCATGGGCCAGTTACTGCAAAAAACCAACATCATCCGCGACGTTCAC
GAGGACTGGCAGGACGGCAGGCGGTGGTATCCCAAGGAGATTTGGAGCAAGCACGTCGACGAATGGGAGCACATG
TTCGATGCTGGCCATCGCCAACAGGCCGTCAACTGCGTGTCGGAAATGGTGCTCGATGCGCTGAAGCACGTCGAG
GAGTGCATCTTCTACATGGCCGGCATGCGGGAGCAGAGCGTCTTTAACTTTGTCGTCATCCCGCAAACCATGGCT
GTTGCCACTCTGGAGCTCGTCTTCCGCAATCCGGCCATACTGGAGAGGAACATCAAGATTACCAAGGGAGACGCC
TGCCAGATTATGCTCGAGTCAACGCAAAACCTCTTGACCGCCTGCAACGTCTTCCGTAGGTACACACGACGGATA
CAGGCCAAGAACGACCCTCGCGATCCAAACTATTTGGCTATCAGCGTGCGCTGCGCCAAGATTGAGCAGTTCATC
GAAACGCTCTATCCGCGGCAAGATGCTGGCAAACTCGAGCATACGGACGCCAATCGTCCCCAGAAGGAGCCGGCA
ATGAGCTCGGGTGAGACATTTATGCTGTTCGCCATTGTCACGGCCTGCCTGCTCGTCGTTTCGGGCATCATGGTT
GGGGCGGCGTGGCTCATGGGTGCTCGGTTTCCTATCATGTCGGACCTCTCGCAGCTTACGGGAGCGCTGTTCTCG
GGTCCAAAAGCCGTCGACGGCGGACGCGACGAGCTCTAG
Gene >Ophio5|6281
ATGGGCGTCGTCTACTACTTACTGCACCCGTACCAGCTGCGTTCCATCATCCAATGGTGCGTCGCATTCCGTCTA
TCCATCGCGTCGGCTGACTCCCCTTGCAGGAAGCTCTGGCACAACCCCGTGCACCAGCGCGACCTGGCCTCCGAG
TCGGAAACGCTCAGAGAATGCTTCCGCTTTCTCGACATGACGAGCCGCAGCTTTGCGGCCGTCATCCAGGAACTC
GATCATGAGCTCCTTGTGCCCGTTACCCTTTTCTACCTCGTACTGCGCGGCCTTGACACGATTGAAGACGACATG
ACGATACCGGTCGCGGAAAAGGTCGGCTACCTGCAAAACTTTCATCTTACCATGGACCAGGACGGTTGGCAATTC
CATGAAAGCAATGAAAAGGACCGCGAGTTGCTAGCAAAATTTGACGTCGTTATCGCCGAGCTGAAAAAGATCAAA
CCACCTTACTCGGAAATCATCCATGACATTGCCCGCAAGATGGGCAACGGCATGGCCGACTACGTGCAAAACACA
AAGATGAAAGAAGACGGCCTGCAGACGATAGAAGAGTACGAGTTATACTGCCACTACGTTGCCGGCCTCGTCGGC
GAGGGGCTGACGCGGCTCTTCGTCTCGTCGAAGCTCGGCAACCCCAAGCTGCTGGAACGGCCGTCACTGACCGAG
TCCATGGGCCAGTTACTGCAAAAAACCAACATCATCCGCGACGTTCACGAGGACTGGCAGGACGGCAGGCGGTGG
TATCCCAAGGAGATTTGGAGCAAGCACGTCGACGAATGGGAGCACATGTTCGATGCTGGCCATCGCCAACAGGCC
GTCAACTGCGTGTCGGAAATGGTGCTCGATGCGCTGAAGCACGTCGAGGAGTGCATCTTCTACATGGCCGGCATG
CGGGAGCAGAGCGTCTTTAACTTTGTCGTCATCCCGCAAACCATGGCTGTTGCCACTCTGGAGCTCGTCTTCCGC
AATCCGGCCATACTGGAGAGGAACATCAAGATTACCAAGGGAGACGCCTGCCAGATTATGCTCGAGTCAACGCAA
AACCTCTTGACCGCCTGCAACGTCTTCCGTAGGTACACACGACGGATACAGGCCAAGAACGACCCTCGCGATCCA
AACTATTTGGCTATCAGCGTGCGCTGCGCCAAGGTGCGCATCAACCGCAGATGAACTGTTTGAGGTCACGCTGAC
GGACACGGCAGATTGAGCAGTTCATCGAAACGCTCTATCCGCGGCAAGATGCTGGCAAACTCGAGCATACGGACG
CCAATCGTCCCCAGAAGGAGCCGGCAATGAGCTCGGGTGAGACATTTATGCTGTTCGCCATTGTCACGGCCTGCC
TGCTCGTCGTTTCGGGCATCATGGTGAGCGCACCCGCAGAGGGGCGGGGCCCAGAGCTATCACTGACGGCTACTA
GGTTGGGGCGGCGTGGCTCATGGGTGCTCGGTTTCCTATCATGTCGGACCTCTCGCAGCTTACGGGAGCGCTGTT
CTCGGGTCCAAAAGCCGTCGACGGCGGACGCGACGAGCTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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