© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6280 |
| Gene name | |
| Location | scaffold_540:7385..8332 |
| Strand | - |
| Gene length (bp) | 947 |
| Transcript length (bp) | 891 |
| Coding sequence length (bp) | 888 |
| Protein length (aa) | 296 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 2.8E-12 | 9 | 152 |
| PF04321 | RmlD_sub_bind | RmlD substrate binding domain | 4.1E-12 | 9 | 160 |
| PF02719 | Polysacc_synt_2 | Polysaccharide biosynthesis protein | 1.6E-04 | 35 | 104 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9LQ04|RMLCD_ARATH | Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana GN=NRS/ER PE=1 SV=1 | 8 | 270 | 3.0E-102 |
| sp|Q9SYM5|RHM1_ARATH | Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1 | 8 | 270 | 2.0E-92 |
| sp|Q9LH76|RHM3_ARATH | Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana GN=RHM3 PE=1 SV=1 | 38 | 270 | 2.0E-80 |
| sp|Q9LPG6|RHM2_ARATH | Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1 | 2 | 270 | 5.0E-80 |
| sp|Q5UPS5|YL780_MIMIV | Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1 | 8 | 291 | 2.0E-65 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 16.04 | 5.92 | 26.15 |
| CcL | In ants, during behavior modification | 3.02 | 0.33 | 5.70 |
| CcD | In ants, recently dead | 2.51 | 0.20 | 4.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.724731 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6280 MGDMVSCFLIWGGNGWIAGQLRALLQAQGKNVFTTTVRMEDRDAVMKELALIEPTHVFNAAGCTGRPNVDWCEDN KEDTVRSNAIGTLNLADCCLRAGIHCTVFATGCIYQYDDAHPIGGPGYTEEDEPNFGGSFYSMIKLHVEPMLKHY NNCLVLRLRMPVSDDLHPRSFVTKIAGYQRVVNVPNSHSILHDLLPAAIALTEGLETGVYNFTNPGAISHNEVLD LFRDIVRPSLTYENFSLEEQAKVLKAGRSNCELDATKLVAKLRKLNLDMELPEIHEAYRRCFERMKASGVC |
| Coding | >Ophio5|6280 ATGGGCGACATGGTTTCTTGCTTCCTCATCTGGGGCGGCAACGGCTGGATCGCCGGCCAGCTCCGGGCTCTCCTC CAGGCCCAGGGCAAGAACGTCTTCACCACGACGGTCCGCATGGAGGACCGTGATGCCGTCATGAAGGAGCTTGCC CTCATCGAGCCCACGCACGTCTTCAACGCCGCCGGCTGCACCGGCAGGCCCAACGTCGACTGGTGCGAGGACAAC AAGGAGGACACGGTGCGATCCAACGCCATTGGCACCCTCAACCTGGCCGACTGCTGCTTGCGGGCCGGCATCCAC TGCACCGTCTTCGCCACGGGGTGCATCTACCAGTACGACGACGCTCATCCCATTGGCGGGCCCGGCTACACGGAG GAGGACGAGCCCAACTTCGGCGGCAGCTTCTACTCCATGATTAAGCTCCATGTTGAGCCTATGCTGAAGCACTAC AATAACTGCCTGGTTCTTCGCCTGCGCATGCCGGTCAGCGACGACCTTCATCCGCGCAGCTTTGTCACCAAGATT GCGGGTTATCAACGCGTCGTCAATGTGCCCAACAGCCACTCGATCCTTCACGACCTCTTACCCGCCGCCATAGCC CTGACTGAAGGCTTGGAGACGGGCGTATACAATTTTACTAACCCCGGCGCCATCTCCCACAACGAGGTCCTCGAC CTTTTCAGGGACATTGTGAGGCCGAGCTTGACATACGAGAACTTTAGTCTAGAGGAACAGGCCAAGGTACTCAAG GCAGGACGAAGCAACTGCGAGCTGGACGCGACGAAGCTCGTGGCCAAGCTCAGGAAACTCAACTTGGACATGGAG TTGCCAGAGATACACGAGGCCTACCGACGGTGCTTTGAGCGGATGAAGGCATCCGGAGTTTGC |
| Transcript | >Ophio5|6280 ATGGGCGACATGGTTTCTTGCTTCCTCATCTGGGGCGGCAACGGCTGGATCGCCGGCCAGCTCCGGGCTCTCCTC CAGGCCCAGGGCAAGAACGTCTTCACCACGACGGTCCGCATGGAGGACCGTGATGCCGTCATGAAGGAGCTTGCC CTCATCGAGCCCACGCACGTCTTCAACGCCGCCGGCTGCACCGGCAGGCCCAACGTCGACTGGTGCGAGGACAAC AAGGAGGACACGGTGCGATCCAACGCCATTGGCACCCTCAACCTGGCCGACTGCTGCTTGCGGGCCGGCATCCAC TGCACCGTCTTCGCCACGGGGTGCATCTACCAGTACGACGACGCTCATCCCATTGGCGGGCCCGGCTACACGGAG GAGGACGAGCCCAACTTCGGCGGCAGCTTCTACTCCATGATTAAGCTCCATGTTGAGCCTATGCTGAAGCACTAC AATAACTGCCTGGTTCTTCGCCTGCGCATGCCGGTCAGCGACGACCTTCATCCGCGCAGCTTTGTCACCAAGATT GCGGGTTATCAACGCGTCGTCAATGTGCCCAACAGCCACTCGATCCTTCACGACCTCTTACCCGCCGCCATAGCC CTGACTGAAGGCTTGGAGACGGGCGTATACAATTTTACTAACCCCGGCGCCATCTCCCACAACGAGGTCCTCGAC CTTTTCAGGGACATTGTGAGGCCGAGCTTGACATACGAGAACTTTAGTCTAGAGGAACAGGCCAAGGTACTCAAG GCAGGACGAAGCAACTGCGAGCTGGACGCGACGAAGCTCGTGGCCAAGCTCAGGAAACTCAACTTGGACATGGAG TTGCCAGAGATACACGAGGCCTACCGACGGTGCTTTGAGCGGATGAAGGCATCCGGAGTTTGCTGA |
| Gene | >Ophio5|6280 ATGGGCGACATGGTTTCTTGCTTCCTCATCTGGGGCGGCAACGGCTGGATCGCCGGCCAGCTCCGGGCTCTCCTC CAGGCCCAGGGCAAGAACGTCTTCACCACGACGGTCCGCATGGAGGACCGTGATGCCGTCATGAAGGAGCTTGCC CTCATCGAGCCCACGCACGTCTTCAACGCCGCCGGCTGCACCGGCAGGCCCAACGTCGACTGGTGCGAGGACAAC AAGGAGGACACGGTGCGATCCAACGCCATTGGCACCCTCAACCTGGCCGACTGCTGCTTGCGGGCCGGCATCCAC TGCACCGTCTTCGCCACGGGGTGCATCTACCAGTACGACGACGCTCATCCCATTGGCGGGCCCGGCTACACGGAG GAGGACGAGCCCAACTTCGGCGGCAGCTTCTACTCCATGATTAAGCTCCATGTTGAGCCTGTAAGACGCTTCCGC CGCGGTCCCTGACGTTTGGGGGTGCTACAGCTTCGTTGCAGATGCTGAAGCACTACAATAACTGCCTGGTTCTTC GCCTGCGCATGCCGGTCAGCGACGACCTTCATCCGCGCAGCTTTGTCACCAAGATTGCGGGTTATCAACGCGTCG TCAATGTGCCCAACAGCCACTCGATCCTTCACGACCTCTTACCCGCCGCCATAGCCCTGACTGAAGGCTTGGAGA CGGGCGTATACAATTTTACTAACCCCGGCGCCATCTCCCACAACGAGGTCCTCGACCTTTTCAGGGACATTGTGA GGCCGAGCTTGACATACGAGAACTTTAGTCTAGAGGAACAGGCCAAGGTACTCAAGGCAGGACGAAGCAACTGCG AGCTGGACGCGACGAAGCTCGTGGCCAAGCTCAGGAAACTCAACTTGGACATGGAGTTGCCAGAGATACACGAGG CCTACCGACGGTGCTTTGAGCGGATGAAGGCATCCGGAGTTTGCTGA |