Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|6280
Gene name
Location	scaffold_540:7385..8332
Strand	-
Gene length (bp)	947
Transcript length (bp)	891
Coding sequence length (bp)	888
Protein length (aa)	296

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01370	Epimerase	NAD dependent epimerase/dehydratase family	2.8E-12	9	152
PF04321	RmlD_sub_bind	RmlD substrate binding domain	4.1E-12	9	160
PF02719	Polysacc_synt_2	Polysaccharide biosynthesis protein	1.6E-04	35	104

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9LQ04\|RMLCD_ARATH	Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana GN=NRS/ER PE=1 SV=1	8	270	3.0E-102
sp\|Q9SYM5\|RHM1_ARATH	Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1	8	270	2.0E-92
sp\|Q9LH76\|RHM3_ARATH	Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana GN=RHM3 PE=1 SV=1	38	270	2.0E-80
sp\|Q9LPG6\|RHM2_ARATH	Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1	2	270	5.0E-80
sp\|Q5UPS5\|YL780_MIMIV	Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1	8	291	2.0E-65

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 24	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|6280 MGDMVSCFLIWGGNGWIAGQLRALLQAQGKNVFTTTVRMEDRDAVMKELALIEPTHVFNAAGCTGRPNVDWCEDN KEDTVRSNAIGTLNLADCCLRAGIHCTVFATGCIYQYDDAHPIGGPGYTEEDEPNFGGSFYSMIKLHVEPMLKHY NNCLVLRLRMPVSDDLHPRSFVTKIAGYQRVVNVPNSHSILHDLLPAAIALTEGLETGVYNFTNPGAISHNEVLD LFRDIVRPSLTYENFSLEEQAKVLKAGRSNCELDATKLVAKLRKLNLDMELPEIHEAYRRCFERMKASGVC
Coding	>Ophio5\|6280 ATGGGCGACATGGTTTCTTGCTTCCTCATCTGGGGCGGCAACGGCTGGATCGCCGGCCAGCTCCGGGCTCTCCTC CAGGCCCAGGGCAAGAACGTCTTCACCACGACGGTCCGCATGGAGGACCGTGATGCCGTCATGAAGGAGCTTGCC CTCATCGAGCCCACGCACGTCTTCAACGCCGCCGGCTGCACCGGCAGGCCCAACGTCGACTGGTGCGAGGACAAC AAGGAGGACACGGTGCGATCCAACGCCATTGGCACCCTCAACCTGGCCGACTGCTGCTTGCGGGCCGGCATCCAC TGCACCGTCTTCGCCACGGGGTGCATCTACCAGTACGACGACGCTCATCCCATTGGCGGGCCCGGCTACACGGAG GAGGACGAGCCCAACTTCGGCGGCAGCTTCTACTCCATGATTAAGCTCCATGTTGAGCCTATGCTGAAGCACTAC AATAACTGCCTGGTTCTTCGCCTGCGCATGCCGGTCAGCGACGACCTTCATCCGCGCAGCTTTGTCACCAAGATT GCGGGTTATCAACGCGTCGTCAATGTGCCCAACAGCCACTCGATCCTTCACGACCTCTTACCCGCCGCCATAGCC CTGACTGAAGGCTTGGAGACGGGCGTATACAATTTTACTAACCCCGGCGCCATCTCCCACAACGAGGTCCTCGAC CTTTTCAGGGACATTGTGAGGCCGAGCTTGACATACGAGAACTTTAGTCTAGAGGAACAGGCCAAGGTACTCAAG GCAGGACGAAGCAACTGCGAGCTGGACGCGACGAAGCTCGTGGCCAAGCTCAGGAAACTCAACTTGGACATGGAG TTGCCAGAGATACACGAGGCCTACCGACGGTGCTTTGAGCGGATGAAGGCATCCGGAGTTTGC
Transcript	>Ophio5\|6280 ATGGGCGACATGGTTTCTTGCTTCCTCATCTGGGGCGGCAACGGCTGGATCGCCGGCCAGCTCCGGGCTCTCCTC CAGGCCCAGGGCAAGAACGTCTTCACCACGACGGTCCGCATGGAGGACCGTGATGCCGTCATGAAGGAGCTTGCC CTCATCGAGCCCACGCACGTCTTCAACGCCGCCGGCTGCACCGGCAGGCCCAACGTCGACTGGTGCGAGGACAAC AAGGAGGACACGGTGCGATCCAACGCCATTGGCACCCTCAACCTGGCCGACTGCTGCTTGCGGGCCGGCATCCAC TGCACCGTCTTCGCCACGGGGTGCATCTACCAGTACGACGACGCTCATCCCATTGGCGGGCCCGGCTACACGGAG GAGGACGAGCCCAACTTCGGCGGCAGCTTCTACTCCATGATTAAGCTCCATGTTGAGCCTATGCTGAAGCACTAC AATAACTGCCTGGTTCTTCGCCTGCGCATGCCGGTCAGCGACGACCTTCATCCGCGCAGCTTTGTCACCAAGATT GCGGGTTATCAACGCGTCGTCAATGTGCCCAACAGCCACTCGATCCTTCACGACCTCTTACCCGCCGCCATAGCC CTGACTGAAGGCTTGGAGACGGGCGTATACAATTTTACTAACCCCGGCGCCATCTCCCACAACGAGGTCCTCGAC CTTTTCAGGGACATTGTGAGGCCGAGCTTGACATACGAGAACTTTAGTCTAGAGGAACAGGCCAAGGTACTCAAG GCAGGACGAAGCAACTGCGAGCTGGACGCGACGAAGCTCGTGGCCAAGCTCAGGAAACTCAACTTGGACATGGAG TTGCCAGAGATACACGAGGCCTACCGACGGTGCTTTGAGCGGATGAAGGCATCCGGAGTTTGCTGA
Gene	>Ophio5\|6280 ATGGGCGACATGGTTTCTTGCTTCCTCATCTGGGGCGGCAACGGCTGGATCGCCGGCCAGCTCCGGGCTCTCCTC CAGGCCCAGGGCAAGAACGTCTTCACCACGACGGTCCGCATGGAGGACCGTGATGCCGTCATGAAGGAGCTTGCC CTCATCGAGCCCACGCACGTCTTCAACGCCGCCGGCTGCACCGGCAGGCCCAACGTCGACTGGTGCGAGGACAAC AAGGAGGACACGGTGCGATCCAACGCCATTGGCACCCTCAACCTGGCCGACTGCTGCTTGCGGGCCGGCATCCAC TGCACCGTCTTCGCCACGGGGTGCATCTACCAGTACGACGACGCTCATCCCATTGGCGGGCCCGGCTACACGGAG GAGGACGAGCCCAACTTCGGCGGCAGCTTCTACTCCATGATTAAGCTCCATGTTGAGCCTGTAAGACGCTTCCGC CGCGGTCCCTGACGTTTGGGGGTGCTACAGCTTCGTTGCAGATGCTGAAGCACTACAATAACTGCCTGGTTCTTC GCCTGCGCATGCCGGTCAGCGACGACCTTCATCCGCGCAGCTTTGTCACCAAGATTGCGGGTTATCAACGCGTCG TCAATGTGCCCAACAGCCACTCGATCCTTCACGACCTCTTACCCGCCGCCATAGCCCTGACTGAAGGCTTGGAGA CGGGCGTATACAATTTTACTAACCCCGGCGCCATCTCCCACAACGAGGTCCTCGACCTTTTCAGGGACATTGTGA GGCCGAGCTTGACATACGAGAACTTTAGTCTAGAGGAACAGGCCAAGGTACTCAAGGCAGGACGAAGCAACTGCG AGCTGGACGCGACGAAGCTCGTGGCCAAGCTCAGGAAACTCAACTTGGACATGGAGTTGCCAGAGATACACGAGG CCTACCGACGGTGCTTTGAGCGGATGAAGGCATCCGGAGTTTGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail