Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6273
Gene name
Locationscaffold_54:47863..48778
Strand+
Gene length (bp)915
Transcript length (bp)861
Coding sequence length (bp)858
Protein length (aa) 286

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 24 0.45

Transmembrane Domains

Domain # Start End Length
1 4 26 22
2 261 283 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6273
MRPAPSLVSLAFGLGSLVVAAAGSNWDHHAVVARADGGPTSSMPKDAAVSPTDSAKSDESPASATSGPRQSRTAT
DSNSAEPTGSDKPTGSDEPTATKDGDGKGTHTGFPPDAPPGGINMLTPLANLEPTPLYRIRQTVTWGWNYTSLLG
TPTAIDIMVSCAVAAETWTLTRNMSFATSVNYVWDTNEQANSVETPLLTQMYTLIVKDSDADINAPPEPGYLGTA
KNFFSFGLYAGQTYTPFSDWKCTGCSGAAAVFDRQAVGLALVTSTLTVLSFTWFVAGLGLH
Coding >Ophio5|6273
ATGCGTCCCGCCCCGTCACTCGTTTCACTGGCCTTCGGCCTCGGCTCTCTCGTTGTTGCTGCCGCCGGGTCTAAC
TGGGACCATCACGCCGTAGTCGCGCGAGCCGATGGCGGTCCCACGAGCTCGATGCCCAAGGACGCCGCAGTCTCC
CCGACCGATTCTGCCAAATCCGATGAGTCACCGGCCTCGGCCACGTCGGGGCCCAGGCAAAGCCGCACCGCAACC
GACAGCAACAGTGCGGAGCCGACTGGCTCCGACAAGCCGACTGGCTCCGACGAGCCGACCGCCACAAAGGACGGC
GACGGAAAGGGGACCCATACCGGCTTCCCCCCGGACGCGCCCCCCGGCGGCATCAACATGCTCACTCCGCTGGCC
AACCTCGAGCCTACGCCCCTGTACCGCATCCGACAAACCGTCACTTGGGGTTGGAACTACACGTCACTTCTCGGC
ACCCCGACCGCCATCGACATCATGGTCAGCTGTGCGGTAGCGGCCGAGACGTGGACCCTCACCAGAAACATGTCC
TTTGCCACCTCGGTCAACTACGTCTGGGACACCAACGAGCAGGCAAATTCGGTCGAGACGCCGCTCCTAACCCAG
ATGTACACGCTCATTGTCAAGGACTCGGACGCAGACATCAACGCCCCGCCCGAGCCGGGATATCTCGGCACCGCC
AAGAACTTCTTCTCCTTTGGCCTCTACGCTGGCCAGACCTACACGCCCTTCTCGGACTGGAAGTGTACCGGCTGC
AGCGGCGCAGCGGCCGTCTTTGATCGTCAGGCCGTCGGACTCGCCTTGGTCACGAGTACCCTTACCGTCCTGAGC
TTTACCTGGTTCGTTGCCGGCCTCGGGCTACAC
Transcript >Ophio5|6273
ATGCGTCCCGCCCCGTCACTCGTTTCACTGGCCTTCGGCCTCGGCTCTCTCGTTGTTGCTGCCGCCGGGTCTAAC
TGGGACCATCACGCCGTAGTCGCGCGAGCCGATGGCGGTCCCACGAGCTCGATGCCCAAGGACGCCGCAGTCTCC
CCGACCGATTCTGCCAAATCCGATGAGTCACCGGCCTCGGCCACGTCGGGGCCCAGGCAAAGCCGCACCGCAACC
GACAGCAACAGTGCGGAGCCGACTGGCTCCGACAAGCCGACTGGCTCCGACGAGCCGACCGCCACAAAGGACGGC
GACGGAAAGGGGACCCATACCGGCTTCCCCCCGGACGCGCCCCCCGGCGGCATCAACATGCTCACTCCGCTGGCC
AACCTCGAGCCTACGCCCCTGTACCGCATCCGACAAACCGTCACTTGGGGTTGGAACTACACGTCACTTCTCGGC
ACCCCGACCGCCATCGACATCATGGTCAGCTGTGCGGTAGCGGCCGAGACGTGGACCCTCACCAGAAACATGTCC
TTTGCCACCTCGGTCAACTACGTCTGGGACACCAACGAGCAGGCAAATTCGGTCGAGACGCCGCTCCTAACCCAG
ATGTACACGCTCATTGTCAAGGACTCGGACGCAGACATCAACGCCCCGCCCGAGCCGGGATATCTCGGCACCGCC
AAGAACTTCTTCTCCTTTGGCCTCTACGCTGGCCAGACCTACACGCCCTTCTCGGACTGGAAGTGTACCGGCTGC
AGCGGCGCAGCGGCCGTCTTTGATCGTCAGGCCGTCGGACTCGCCTTGGTCACGAGTACCCTTACCGTCCTGAGC
TTTACCTGGTTCGTTGCCGGCCTCGGGCTACACTGA
Gene >Ophio5|6273
ATGCGTCCCGCCCCGTCACTCGTTTCACTGGCCTTCGGCCTCGGCTCTCTCGTTGTTGCTGCCGCCGGGTCTAAC
TGGGACCATCACGCCGTAGTCGCGCGAGCCGATGGCGGTCCCACGAGCTCGAGTACGCTTCTCGTCGTGCCCATG
TTCTCTGTCTCCCTGCTGACGCGCATGACAGTGCCCAAGGACGCCGCAGTCTCCCCGACCGATTCTGCCAAATCC
GATGAGTCACCGGCCTCGGCCACGTCGGGGCCCAGGCAAAGCCGCACCGCAACCGACAGCAACAGTGCGGAGCCG
ACTGGCTCCGACAAGCCGACTGGCTCCGACGAGCCGACCGCCACAAAGGACGGCGACGGAAAGGGGACCCATACC
GGCTTCCCCCCGGACGCGCCCCCCGGCGGCATCAACATGCTCACTCCGCTGGCCAACCTCGAGCCTACGCCCCTG
TACCGCATCCGACAAACCGTCACTTGGGGTTGGAACTACACGTCACTTCTCGGCACCCCGACCGCCATCGACATC
ATGGTCAGCTGTGCGGTAGCGGCCGAGACGTGGACCCTCACCAGAAACATGTCCTTTGCCACCTCGGTCAACTAC
GTCTGGGACACCAACGAGCAGGCAAATTCGGTCGAGACGCCGCTCCTAACCCAGATGTACACGCTCATTGTCAAG
GACTCGGACGCAGACATCAACGCCCCGCCCGAGCCGGGATATCTCGGCACCGCCAAGAACTTCTTCTCCTTTGGC
CTCTACGCTGGCCAGACCTACACGCCCTTCTCGGACTGGAAGTGTACCGGCTGCAGCGGCGCAGCGGCCGTCTTT
GATCGTCAGGCCGTCGGACTCGCCTTGGTCACGAGTACCCTTACCGTCCTGAGCTTTACCTGGTTCGTTGCCGGC
CTCGGGCTACACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail