Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|627
Gene name
Locationscaffold_117:288..1366
Strand+
Gene length (bp)1078
Transcript length (bp)648
Coding sequence length (bp)645
Protein length (aa) 215

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04178 Got1 Got1/Sft2-like family 2.1E-34 81 192

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P38166|SFT2_YEAST Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1 4 209 2.0E-41
sp|Q9P6K1|SFT2_SCHPO Protein transport protein sft2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sft2 PE=3 SV=1 44 213 2.0E-32
sp|Q9CSV6|SFT2C_MOUSE Vesicle transport protein SFT2C OS=Mus musculus GN=Sft2d3 PE=1 SV=2 75 201 4.0E-09

GO

GO Term Description Terminal node
GO:0016192 vesicle-mediated transport Yes
GO:0051234 establishment of localization No
GO:0006810 transport No
GO:0051179 localization No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 22 0.45

Transmembrane Domains

Domain # Start End Length
1 83 105 22
2 112 131 19
3 146 164 18
4 171 193 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|627
MASSSFRDSINSLGWSRRGSDEPVNTSQQSGLLSSIKNLSPFQDRGYMRLPTSEGPGAPLPAPSRREEEEGWFVL
SRWDRLLIFGACNLAALACFVICFTLFPVLSLRPRKFVILWSVGSLLFLASFAAVMGPINYLHHLFSTPRLPFTA
AYFGSILLTLVFALKLHSTILTLLSAVAQLACLIWYLVSYFPMGSAGLRLAATFGTRQATAWMSG
Coding >Ophio5|627
ATGGCTTCCAGCTCGTTCCGGGACTCCATCAACTCGCTCGGCTGGAGTCGGCGAGGCAGCGATGAGCCCGTCAAC
ACGTCGCAGCAGTCTGGGTTGCTTTCATCCATCAAGAATCTGTCCCCCTTCCAGGACCGTGGCTACATGCGCCTG
CCGACCAGCGAGGGTCCTGGAGCACCTTTACCGGCACCAAGTCGGCGAGAGGAGGAAGAGGGCTGGTTCGTATTG
AGCAGATGGGACCGGTTGTTGATCTTTGGAGCTTGCAACCTTGCTGCCCTCGCCTGCTTCGTCATCTGCTTCACC
CTCTTCCCGGTTCTGTCGTTGAGGCCGCGCAAGTTTGTCATTTTGTGGTCTGTCGGCTCGCTCCTCTTCTTGGCG
TCCTTTGCCGCTGTCATGGGCCCGATCAACTACTTGCATCACCTCTTCTCTACGCCAAGACTTCCATTTACTGCG
GCTTATTTTGGCTCTATATTATTAACTCTGGTCTTCGCCCTCAAGCTTCACAGCACCATACTGACTCTCCTTTCC
GCCGTGGCTCAGCTCGCATGCCTGATCTGGTACCTCGTCAGCTACTTTCCCATGGGCTCGGCGGGCTTGCGTCTG
GCGGCCACGTTTGGAACGAGGCAAGCCACAGCGTGGATGTCTGGG
Transcript >Ophio5|627
ATGGCTTCCAGCTCGTTCCGGGACTCCATCAACTCGCTCGGCTGGAGTCGGCGAGGCAGCGATGAGCCCGTCAAC
ACGTCGCAGCAGTCTGGGTTGCTTTCATCCATCAAGAATCTGTCCCCCTTCCAGGACCGTGGCTACATGCGCCTG
CCGACCAGCGAGGGTCCTGGAGCACCTTTACCGGCACCAAGTCGGCGAGAGGAGGAAGAGGGCTGGTTCGTATTG
AGCAGATGGGACCGGTTGTTGATCTTTGGAGCTTGCAACCTTGCTGCCCTCGCCTGCTTCGTCATCTGCTTCACC
CTCTTCCCGGTTCTGTCGTTGAGGCCGCGCAAGTTTGTCATTTTGTGGTCTGTCGGCTCGCTCCTCTTCTTGGCG
TCCTTTGCCGCTGTCATGGGCCCGATCAACTACTTGCATCACCTCTTCTCTACGCCAAGACTTCCATTTACTGCG
GCTTATTTTGGCTCTATATTATTAACTCTGGTCTTCGCCCTCAAGCTTCACAGCACCATACTGACTCTCCTTTCC
GCCGTGGCTCAGCTCGCATGCCTGATCTGGTACCTCGTCAGCTACTTTCCCATGGGCTCGGCGGGCTTGCGTCTG
GCGGCCACGTTTGGAACGAGGCAAGCCACAGCGTGGATGTCTGGGTGA
Gene >Ophio5|627
ATGGCTTCCAGCTCGTTCCGGGACTCCATCAACTCGCTCGGCTGGAGTCGGCGAGGCAGCGATGAGCCCGTCAAC
ACGTCGCAGCAGTCTGGGTTGCTTTCATCCATCAAGAATCTGTCCCCCTTCCAGGACCGTGGCTACATGCGCCTG
CCGACCAGCGAGGGTCCTGGAGCACCTTTACCGGCACCAAGTCGGCGAGAGGAGGAAGAGGGCTGGTTCGTATGT
GAGTCAACCTGACGACATCGGGTCGCGGCCCCCCTGCAGCGGGACATGCGCATGGCAGTTTTGGCCATGAACCGG
ATTCTGCATGTGATGCGAATGATGCGCCTCGTGGGCGGCAGAGCTAACTCGAGGTTGCAGTGAGCAGATGGGACC
GGTTGTTGATCTTTGGAGCTTGCAACCTTGCTGCCCTCGCCTGCTTCGTCATCTGCTTCACCCTCTTCCCGGTTC
TGTCGTTGAGGCCGCGCAAGTTTGTCATTTTGTGAGTGGGACTGTCCGTCTTGTCAGCATGTCTTCGGCCTATTC
CTCCCGCTTTCCCACCCGCTTTCCCACCCGCTTTCCCATGTCGCGCCACCTTTCATGTCCCCCCTTACCCATCGG
GCGACGGCCGCCGGCCCATCCAAGTCGACTTGCCCCGATGATCGCCTGCCCCAAGTGCCGTGTCCTAGATGTCGC
CTCTCTTCGGCCGAGCAGTGTACCTCGTGGGAACTAACGGCGCGTAGGTGGTCTGTCGGCTCGCTCCTCTTCTTG
GCGTCCTTTGCCGCTGTCATGGGCCCGATCAACTACTTGCATCACCTCTTCTCTACGCCAAGACTTCCATTTACT
GCGGCTTATTTTGGCTCTATATTATTAACTCTGGTCTTCGCCCTCAAGGTCTGTCTGGGCGCGATTCCTCCCGTA
GGCGCCATGGCTAATTCCTCTGCAGCTTCACAGCACCATACTGACTCTCCTTTCCGCCGTGGCTCAGCTCGCATG
CCTGATCTGGTACCTCGTCAGCTACTTTCCCATGGGCTCGGCGGGCTTGCGTCTGGCGGCCACGTTTGGAACGAG
GCAAGCCACAGCGTGGATGTCTGGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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