Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6243
Gene name
Locationscaffold_538:3317..3671
Strand+
Gene length (bp)354
Transcript length (bp)264
Coding sequence length (bp)261
Protein length (aa) 87

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF15786 PET117 PET assembly of cytochrome c oxidase, mitochondrial 2.4E-24 4 69

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q02771|PT117_YEAST Protein PET117, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PET117 PE=3 SV=1 1 73 6.0E-08
sp|C6Y4C1|PT117_SCHPO Protein pet117, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pet117 PE=2 SV=1 1 61 8.0E-08
sp|E9QJ05|PT117_DANRE Protein PET117 homolog, mitochondrial OS=Danio rerio GN=pet117 PE=3 SV=1 1 79 1.0E-07
sp|Q6UWS5|PT117_HUMAN Protein PET117 homolog, mitochondrial OS=Homo sapiens GN=PET117 PE=3 SV=1 1 50 9.0E-07
sp|P0DJF2|PT117_MOUSE Protein PET117 homolog, mitochondrial OS=Mus musculus GN=Pet117 PE=3 SV=1 1 50 2.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6243
MSRASKLTLGATSLFALSTVVFVHFQQKAEQAAMHQGVVRDMEQQRIKRERQQDFDAQRALELEYKRHQNVHDST
APEPDAKAPPSP
Coding >Ophio5|6243
ATGTCTCGCGCCTCCAAGCTCACCCTTGGCGCAACGTCTCTCTTCGCCCTCTCCACCGTCGTCTTCGTCCACTTC
CAGCAGAAAGCCGAACAAGCCGCCATGCATCAGGGCGTTGTCCGCGACATGGAACAGCAGCGTATTAAGCGCGAG
CGCCAACAAGACTTTGACGCGCAACGCGCCCTCGAGCTCGAATACAAGCGTCACCAAAACGTTCACGACTCTACC
GCCCCCGAACCTGACGCCAAGGCCCCGCCGTCGCCG
Transcript >Ophio5|6243
ATGTCTCGCGCCTCCAAGCTCACCCTTGGCGCAACGTCTCTCTTCGCCCTCTCCACCGTCGTCTTCGTCCACTTC
CAGCAGAAAGCCGAACAAGCCGCCATGCATCAGGGCGTTGTCCGCGACATGGAACAGCAGCGTATTAAGCGCGAG
CGCCAACAAGACTTTGACGCGCAACGCGCCCTCGAGCTCGAATACAAGCGTCACCAAAACGTTCACGACTCTACC
GCCCCCGAACCTGACGCCAAGGCCCCGCCGTCGCCGTAG
Gene >Ophio5|6243
ATGTCTCGCGCCTCCAAGCTCACCCTTGGCGCAACGTCTCTCTTCGCCCTCTCCACCGTCGTCTTCGTCCACTTC
CAGCAGAAAGCCGAACAAGCCGTACACGTCCTTTTCTCTCTTTCGCCCTCTTTTTCTCTTCCCCTCGTCTTCCTG
CCTCACGCCCCTCCCGCGCAGCTGACCAGAGCTCAGGCCATGCATCAGGGCGTTGTCCGCGACATGGAACAGCAG
CGTATTAAGCGCGAGCGCCAACAAGACTTTGACGCGCAACGCGCCCTCGAGCTCGAATACAAGCGTCACCAAAAC
GTTCACGACTCTACCGCCCCCGAACCTGACGCCAAGGCCCCGCCGTCGCCGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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