© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6233 |
| Gene name | |
| Location | scaffold_536:198..1332 |
| Strand | - |
| Gene length (bp) | 1134 |
| Transcript length (bp) | 948 |
| Coding sequence length (bp) | 945 |
| Protein length (aa) | 315 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00153 | Mito_carr | Mitochondrial carrier protein | 1.1E-05 | 23 | 94 |
| PF00153 | Mito_carr | Mitochondrial carrier protein | 2.8E-06 | 122 | 195 |
| PF00153 | Mito_carr | Mitochondrial carrier protein | 4.1E-13 | 214 | 304 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04013|YHM2_YEAST | Citrate/oxoglutarate carrier protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHM2 PE=1 SV=1 | 6 | 315 | 2.0E-159 |
| sp|P78763|YG1D_SCHPO | Uncharacterized mitochondrial carrier C83.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC83.13 PE=2 SV=2 | 14 | 305 | 1.0E-93 |
| sp|Q54B67|MCFZ_DICDI | Mitochondrial substrate carrier family protein Z OS=Dictyostelium discoideum GN=mcfZ PE=2 SV=1 | 41 | 282 | 1.0E-16 |
| sp|P33303|SFC1_YEAST | Succinate/fumarate mitochondrial transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFC1 PE=1 SV=2 | 24 | 282 | 2.0E-11 |
| sp|P79110|TXTP_BOVIN | Tricarboxylate transport protein, mitochondrial OS=Bos taurus GN=SLC25A1 PE=2 SV=1 | 42 | 306 | 9.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04013|YHM2_YEAST | Citrate/oxoglutarate carrier protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHM2 PE=1 SV=1 | 6 | 315 | 2.0E-159 |
| sp|P78763|YG1D_SCHPO | Uncharacterized mitochondrial carrier C83.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC83.13 PE=2 SV=2 | 14 | 305 | 1.0E-93 |
| sp|Q54B67|MCFZ_DICDI | Mitochondrial substrate carrier family protein Z OS=Dictyostelium discoideum GN=mcfZ PE=2 SV=1 | 41 | 282 | 1.0E-16 |
| sp|P33303|SFC1_YEAST | Succinate/fumarate mitochondrial transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFC1 PE=1 SV=2 | 24 | 282 | 2.0E-11 |
| sp|P79110|TXTP_BOVIN | Tricarboxylate transport protein, mitochondrial OS=Bos taurus GN=SLC25A1 PE=2 SV=1 | 42 | 306 | 9.0E-11 |
| sp|Q55GE2|ODC_DICDI | Probable mitochondrial 2-oxodicarboxylate carrier OS=Dictyostelium discoideum GN=mcfT PE=3 SV=1 | 6 | 282 | 1.0E-08 |
| sp|Q8BZ09|ODC_MOUSE | Mitochondrial 2-oxodicarboxylate carrier OS=Mus musculus GN=Slc25a21 PE=1 SV=1 | 39 | 282 | 1.0E-08 |
| sp|P38152|TXTP_YEAST | Tricarboxylate transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTP1 PE=2 SV=3 | 105 | 283 | 4.0E-08 |
| sp|Q8BL03|MCATL_MOUSE | Mitochondrial basic amino acids transporter OS=Mus musculus GN=Slc25a29 PE=1 SV=1 | 134 | 278 | 9.0E-08 |
| sp|Q99JD3|ODC_RAT | Mitochondrial 2-oxodicarboxylate carrier OS=Rattus norvegicus GN=Slc25a21 PE=2 SV=1 | 39 | 282 | 2.0E-07 |
| sp|Q9BQT8|ODC_HUMAN | Mitochondrial 2-oxodicarboxylate carrier OS=Homo sapiens GN=SLC25A21 PE=1 SV=1 | 39 | 282 | 2.0E-07 |
| sp|Q9VBN7|SAMC_DROME | S-adenosylmethionine mitochondrial carrier protein homolog OS=Drosophila melanogaster GN=CG4743 PE=2 SV=2 | 20 | 290 | 3.0E-07 |
| sp|O13844|YFG5_SCHPO | Uncharacterized mitochondrial carrier C19G12.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC19G12.05 PE=3 SV=1 | 116 | 283 | 4.0E-07 |
| sp|Q86HN8|MCFY_DICDI | Mitochondrial substrate carrier family protein Y OS=Dictyostelium discoideum GN=mcfY PE=3 SV=1 | 107 | 289 | 6.0E-07 |
| sp|Q86AV5|MCFX_DICDI | Mitochondrial substrate carrier family protein X OS=Dictyostelium discoideum GN=mcfX PE=3 SV=1 | 14 | 284 | 1.0E-06 |
| sp|A4QNX2|S247B_DANRE | Solute carrier family 25 member 47-B OS=Danio rerio GN=slc25a47b PE=2 SV=1 | 39 | 244 | 1.0E-06 |
| sp|Q4V9P0|SAMC_DANRE | S-adenosylmethionine mitochondrial carrier protein OS=Danio rerio GN=slc25a26 PE=2 SV=1 | 42 | 282 | 2.0E-06 |
| sp|Q54FE6|MCFS_DICDI | Mitochondrial substrate carrier family protein S OS=Dictyostelium discoideum GN=mcfS PE=3 SV=1 | 124 | 282 | 2.0E-06 |
| sp|P25874|UCP1_HUMAN | Mitochondrial brown fat uncoupling protein 1 OS=Homo sapiens GN=UCP1 PE=2 SV=3 | 140 | 282 | 2.0E-06 |
| sp|Q5XGI1|KMCP1_XENTR | Kidney mitochondrial carrier protein 1 OS=Xenopus tropicalis GN=slc25a30 PE=2 SV=1 | 42 | 300 | 2.0E-06 |
| sp|P32089|TXTP_RAT | Tricarboxylate transport protein, mitochondrial OS=Rattus norvegicus GN=Slc25a1 PE=1 SV=1 | 42 | 306 | 2.0E-06 |
| sp|P53007|TXTP_HUMAN | Tricarboxylate transport protein, mitochondrial OS=Homo sapiens GN=SLC25A1 PE=1 SV=2 | 42 | 306 | 4.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 150.15 | 81.60 | 218.69 |
| CcL | In ants, during behavior modification | 78.29 | 39.14 | 117.44 |
| CcD | In ants, recently dead | 127.83 | 69.67 | 186.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.002436 | yes |
| SC16a | CcD | 0.517444 | no |
| CcL | CcD | 0.034227 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6233 MSVAVTAPASAGGKLEKKPIKFSNLLLGAGLNMFEVTTLGQPLEVVKTTMAAHRGDGFGSALGRIWARGGALGFY QGLIPWAWIEASTKGAVLLFVASEAEYYARSAGASEFGGGILGGITGGVAQAYATMGFCTCMKTVEITKHKMAAA GVKPTSTMQTFMDIYRKEGIRGINKGVNAVAIRQMTNWGSRFGLSRLAEGWIRSATGKKQGDKLSGWEKILASGI GGGLSAWNQPIEVIRVEMQSKKEDPNRPKKMTVGNTFRYIYTNNGLSGLYRGVTPRIGLGVWQTICMVAIGDMAK TYVEKLTGETVTAKH |
| Coding | >Ophio5|6233 ATGTCGGTGGCCGTGACGGCGCCAGCCTCGGCGGGGGGGAAGCTGGAGAAGAAGCCCATCAAGTTCTCCAATCTG CTGCTCGGTGCGGGCCTCAACATGTTTGAGGTTACGACGTTGGGGCAGCCGCTCGAGGTGGTCAAGACGACCATG GCGGCTCATCGGGGTGATGGCTTTGGGTCGGCGCTGGGACGGATTTGGGCTCGTGGTGGTGCTCTGGGCTTCTAT CAGGGTCTCATCCCCTGGGCCTGGATCGAAGCTTCTACCAAGGGCGCCGTCCTCCTCTTCGTCGCGTCCGAAGCC GAATACTACGCCCGGTCGGCGGGCGCGTCCGAGTTCGGCGGCGGCATCTTGGGTGGCATCACGGGCGGCGTGGCC CAAGCGTATGCCACCATGGGCTTCTGCACCTGCATGAAGACGGTGGAAATCACCAAGCATAAGATGGCGGCCGCC GGCGTCAAGCCGACGTCGACGATGCAGACCTTTATGGACATTTATCGCAAGGAGGGCATCCGCGGCATCAACAAG GGCGTCAACGCCGTCGCCATTCGCCAGATGACCAATTGGGGTAGTCGCTTCGGCCTCAGTCGTCTGGCCGAGGGT TGGATCCGTTCCGCCACCGGCAAGAAGCAGGGCGACAAACTCTCGGGCTGGGAGAAGATTCTCGCCAGCGGTATC GGCGGCGGCCTCAGTGCTTGGAACCAGCCTATCGAGGTGATTCGTGTCGAGATGCAGAGCAAGAAGGAGGATCCG AATCGTCCCAAGAAGATGACGGTGGGAAACACTTTCCGCTACATCTACACCAACAACGGCCTCAGCGGTCTGTAT CGTGGTGTTACGCCGCGCATCGGCCTCGGTGTTTGGCAGACCATTTGCATGGTGGCTATTGGCGACATGGCCAAG ACGTATGTTGAGAAGCTGACGGGCGAAACGGTGACGGCTAAACAC |
| Transcript | >Ophio5|6233 ATGTCGGTGGCCGTGACGGCGCCAGCCTCGGCGGGGGGGAAGCTGGAGAAGAAGCCCATCAAGTTCTCCAATCTG CTGCTCGGTGCGGGCCTCAACATGTTTGAGGTTACGACGTTGGGGCAGCCGCTCGAGGTGGTCAAGACGACCATG GCGGCTCATCGGGGTGATGGCTTTGGGTCGGCGCTGGGACGGATTTGGGCTCGTGGTGGTGCTCTGGGCTTCTAT CAGGGTCTCATCCCCTGGGCCTGGATCGAAGCTTCTACCAAGGGCGCCGTCCTCCTCTTCGTCGCGTCCGAAGCC GAATACTACGCCCGGTCGGCGGGCGCGTCCGAGTTCGGCGGCGGCATCTTGGGTGGCATCACGGGCGGCGTGGCC CAAGCGTATGCCACCATGGGCTTCTGCACCTGCATGAAGACGGTGGAAATCACCAAGCATAAGATGGCGGCCGCC GGCGTCAAGCCGACGTCGACGATGCAGACCTTTATGGACATTTATCGCAAGGAGGGCATCCGCGGCATCAACAAG GGCGTCAACGCCGTCGCCATTCGCCAGATGACCAATTGGGGTAGTCGCTTCGGCCTCAGTCGTCTGGCCGAGGGT TGGATCCGTTCCGCCACCGGCAAGAAGCAGGGCGACAAACTCTCGGGCTGGGAGAAGATTCTCGCCAGCGGTATC GGCGGCGGCCTCAGTGCTTGGAACCAGCCTATCGAGGTGATTCGTGTCGAGATGCAGAGCAAGAAGGAGGATCCG AATCGTCCCAAGAAGATGACGGTGGGAAACACTTTCCGCTACATCTACACCAACAACGGCCTCAGCGGTCTGTAT CGTGGTGTTACGCCGCGCATCGGCCTCGGTGTTTGGCAGACCATTTGCATGGTGGCTATTGGCGACATGGCCAAG ACGTATGTTGAGAAGCTGACGGGCGAAACGGTGACGGCTAAACACTAG |
| Gene | >Ophio5|6233 ATGTCGGTGGCCGTGACGGCGCCAGCCTCGGCGGGGGGGAAGCTGGAGAAGAAGCCCATCAAGTTCTCCAATCTG CTGCTCGGTGCGGGCCTCAACATGTTTGAGGTTACGACGTTGGGGCAGCCGCTCGAGGTGGTCAAGACGACCATG GCGGCTCATCGGGGTGATGGCTTTGGGTCGGCGCTGGGACGGATTTGGGCTCGTGGTGGTGCTCTGGGCTGTGAG AAAGCGATGCCTTCTCCCTTTATCGACTCTTCGTACTGACCCTTTTTAAAACTTCATCTCAGTCTATCAGGGTCT CATCCCCTGGGCCTGGATCGAAGCTTCTACCAAGGGCGCCGTCCTCCTCTTCGTCGCGTCCGAAGCCGAATACTA CGCCCGGTCGGCGGGCGCGTCCGAGTTCGGCGGCGGCATCTTGGGTGGCATCACGGGCGGCGTGGCCCAAGCGTA TGCCACCATGGGCTTCTGCACCTGCATGAAGACGGTGGAAATCACCAAGCATAAGATGGCGGCCGCCGGCGTCAA GCCGACGTCGACGATGCAGACCTTTATGGACATTTATCGCAAGGAGGGCATCCGCGGCATCAACAAGGGCGTCAA CGCCGTCGCCATTCGCCAGATGACCAATTGGGGTAGTCGCTTCGGCCTCAGTCGTCTGGCCGAGGGTTGGATCCG TTCCGCCACCGGCAAGAAGCAGGGCGACAAACTCTCGGGCTGGGAGAAGATTCTCGCCAGCGGTATCGGCGGCGG CCTCAGTGCTTGGAACCAGCCTATCGAGGTGATTCGTGTCGAGATGCAGAGCAAGAAGGAGGATCCGAATCGTCC CAAGAAGATGACGGTGGGAAACACTTTCCGCTACATCTACACCAACAACGGCCTCAGCGGTCTGTATCGTGGTGT TACGCCGCGCATCGGCCTCGGTGTTTGGCAGACCATTTGCATGGTGGCTATTGGCGACATGTTTGTGCTTGCTTT GCTTGATTCCCTCCTCCCCCCTTTTTTTTTCTTCTCTTCCTCGTCTCGTCCAAGAAAAAAAAAAAAGGATAACCG GATCTTGCTGACGGAACCTCTCTCTGCAGGGCCAAGACGTATGTTGAGAAGCTGACGGGCGAAACGGTGACGGCT AAACACTAG |