© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6223 |
| Gene name | |
| Location | scaffold_533:13014..14070 |
| Strand | - |
| Gene length (bp) | 1056 |
| Transcript length (bp) | 1056 |
| Coding sequence length (bp) | 1053 |
| Protein length (aa) | 351 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01223 | Endonuclease_NS | DNA/RNA non-specific endonuclease | 1.6E-66 | 82 | 310 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P08466|NUC1_YEAST | Mitochondrial nuclease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUC1 PE=1 SV=1 | 57 | 331 | 6.0E-125 |
| sp|Q10480|PNU1_SCHPO | Nuclease 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnu1 PE=2 SV=2 | 84 | 343 | 2.0E-100 |
| sp|P81204|NUC1_SYNRA | Nuclease OS=Syncephalastrum racemosum PE=1 SV=1 | 84 | 323 | 6.0E-73 |
| sp|P81203|NUC1_CUNEE | Nuclease C1 OS=Cunninghamella echinulata var. echinulata GN=NUC1CE PE=1 SV=1 | 84 | 325 | 2.0E-71 |
| sp|Q95NM6|NUCG_CAEEL | Endonuclease G, mitochondrial OS=Caenorhabditis elegans GN=cps-6 PE=1 SV=1 | 16 | 309 | 4.0E-59 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P08466|NUC1_YEAST | Mitochondrial nuclease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUC1 PE=1 SV=1 | 57 | 331 | 6.0E-125 |
| sp|Q10480|PNU1_SCHPO | Nuclease 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnu1 PE=2 SV=2 | 84 | 343 | 2.0E-100 |
| sp|P81204|NUC1_SYNRA | Nuclease OS=Syncephalastrum racemosum PE=1 SV=1 | 84 | 323 | 6.0E-73 |
| sp|P81203|NUC1_CUNEE | Nuclease C1 OS=Cunninghamella echinulata var. echinulata GN=NUC1CE PE=1 SV=1 | 84 | 325 | 2.0E-71 |
| sp|Q95NM6|NUCG_CAEEL | Endonuclease G, mitochondrial OS=Caenorhabditis elegans GN=cps-6 PE=1 SV=1 | 16 | 309 | 4.0E-59 |
| sp|O08600|NUCG_MOUSE | Endonuclease G, mitochondrial OS=Mus musculus GN=Endog PE=1 SV=1 | 57 | 309 | 3.0E-57 |
| sp|P38447|NUCG_BOVIN | Endonuclease G, mitochondrial OS=Bos taurus GN=ENDOG PE=1 SV=1 | 84 | 309 | 4.0E-57 |
| sp|Q14249|NUCG_HUMAN | Endonuclease G, mitochondrial OS=Homo sapiens GN=ENDOG PE=1 SV=4 | 57 | 305 | 4.0E-57 |
| sp|Q502K1|EXOG_DANRE | Nuclease EXOG, mitochondrial OS=Danio rerio GN=exog PE=2 SV=2 | 87 | 326 | 3.0E-50 |
| sp|Q8C163|EXOG_MOUSE | Nuclease EXOG, mitochondrial OS=Mus musculus GN=Exog PE=1 SV=1 | 66 | 326 | 1.0E-45 |
| sp|Q0IH72|EXOG_XENLA | Nuclease EXOG, mitochondrial OS=Xenopus laevis GN=exog PE=2 SV=1 | 78 | 326 | 4.0E-45 |
| sp|Q9Y2C4|EXOG_HUMAN | Nuclease EXOG, mitochondrial OS=Homo sapiens GN=EXOG PE=1 SV=2 | 66 | 332 | 4.0E-45 |
| sp|P38446|NUCA_NOSS1 | Nuclease OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=nucA PE=1 SV=1 | 92 | 309 | 6.0E-15 |
| sp|P13717|NUCA_SERMA | Nuclease OS=Serratia marcescens GN=nucA PE=1 SV=2 | 99 | 310 | 2.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0046872 | metal ion binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 27 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 72.51 | 39.44 | 105.59 |
| CcL | In ants, during behavior modification | 132.64 | 70.48 | 194.80 |
| CcD | In ants, recently dead | 127.47 | 69.15 | 185.79 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.004113 | yes |
| SC16a | CcD | 0.008109 | yes |
| CcL | CcD | 0.888594 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6223 MSKSTLAMFAALGAGGGAALTAAVYSIRSSYASSESGGSSKVDSSVATSSRPSSAEIFGPSPTTVAAAAAAAAAT RNPVDPAGLFEYGFPGPVSDLAFRSALVSSYDRRTRNPHWVVEHITPASLALREGDRQSSAFVEDDMVPAKFRAL LRDYFRSGYDRGHQVPAADAKWSQTAMDDTFYLSNMCPQVGEGFNRDYWAHFEDFCRRLTVQYPSVRIVTGPLYL PRKDPVDNKWYVRYEMIGSPPSVAVPTHFYKVIFAEDGKADGNVAIGAFVLPNARIANDKPITDFEVPVEAVERA SGLEFATKLPVQRRRRLCADTACALVIRDYAERQKAFAKNDKRPVPSTPKS |
| Coding | >Ophio5|6223 ATGTCCAAATCCACGCTCGCCATGTTTGCTGCTCTTGGTGCCGGGGGCGGAGCCGCCTTGACGGCCGCCGTTTAC TCTATACGGTCGAGTTATGCGTCTTCGGAGAGTGGTGGTAGCAGCAAAGTTGATTCCTCGGTGGCTACGTCGTCA CGACCTTCTTCGGCTGAGATTTTCGGTCCTTCCCCTACCACCGTGGCCGCCGCCGCCGCGGCAGCAGCAGCAACA CGCAATCCCGTCGATCCAGCCGGCCTTTTCGAATATGGCTTTCCGGGACCGGTGTCGGATCTCGCGTTCCGGTCG GCGCTGGTATCGAGTTACGATCGTCGAACGCGTAACCCGCACTGGGTTGTCGAGCATATCACGCCCGCGTCTCTG GCTTTACGCGAGGGTGACCGGCAGTCTAGCGCGTTTGTGGAAGATGACATGGTGCCGGCCAAGTTTCGCGCTCTG TTGCGTGACTACTTTCGCAGCGGATATGATCGCGGTCATCAGGTTCCGGCCGCGGATGCAAAGTGGTCGCAAACC GCCATGGACGACACCTTTTATCTCTCCAACATGTGTCCCCAGGTCGGAGAGGGCTTCAACCGCGACTACTGGGCT CACTTTGAAGACTTCTGTCGTCGCCTAACGGTCCAGTATCCTTCCGTCCGAATCGTTACCGGACCGCTTTACCTA CCGCGCAAAGACCCCGTCGACAACAAGTGGTACGTCCGGTACGAAATGATAGGCAGTCCGCCCTCCGTCGCCGTC CCGACGCATTTTTACAAGGTCATCTTCGCCGAGGATGGAAAGGCTGATGGCAATGTCGCCATCGGTGCCTTTGTT CTTCCCAACGCTCGCATTGCCAATGATAAGCCCATTACCGACTTCGAGGTCCCTGTCGAGGCTGTCGAACGCGCA AGTGGCCTCGAGTTCGCCACCAAGTTGCCCGTTCAGAGGAGGCGCAGACTCTGCGCTGATACCGCTTGCGCTCTC GTCATTCGTGATTACGCTGAGAGGCAAAAGGCTTTTGCAAAGAATGACAAGCGGCCTGTCCCTTCCACGCCCAAG TCT |
| Transcript | >Ophio5|6223 ATGTCCAAATCCACGCTCGCCATGTTTGCTGCTCTTGGTGCCGGGGGCGGAGCCGCCTTGACGGCCGCCGTTTAC TCTATACGGTCGAGTTATGCGTCTTCGGAGAGTGGTGGTAGCAGCAAAGTTGATTCCTCGGTGGCTACGTCGTCA CGACCTTCTTCGGCTGAGATTTTCGGTCCTTCCCCTACCACCGTGGCCGCCGCCGCCGCGGCAGCAGCAGCAACA CGCAATCCCGTCGATCCAGCCGGCCTTTTCGAATATGGCTTTCCGGGACCGGTGTCGGATCTCGCGTTCCGGTCG GCGCTGGTATCGAGTTACGATCGTCGAACGCGTAACCCGCACTGGGTTGTCGAGCATATCACGCCCGCGTCTCTG GCTTTACGCGAGGGTGACCGGCAGTCTAGCGCGTTTGTGGAAGATGACATGGTGCCGGCCAAGTTTCGCGCTCTG TTGCGTGACTACTTTCGCAGCGGATATGATCGCGGTCATCAGGTTCCGGCCGCGGATGCAAAGTGGTCGCAAACC GCCATGGACGACACCTTTTATCTCTCCAACATGTGTCCCCAGGTCGGAGAGGGCTTCAACCGCGACTACTGGGCT CACTTTGAAGACTTCTGTCGTCGCCTAACGGTCCAGTATCCTTCCGTCCGAATCGTTACCGGACCGCTTTACCTA CCGCGCAAAGACCCCGTCGACAACAAGTGGTACGTCCGGTACGAAATGATAGGCAGTCCGCCCTCCGTCGCCGTC CCGACGCATTTTTACAAGGTCATCTTCGCCGAGGATGGAAAGGCTGATGGCAATGTCGCCATCGGTGCCTTTGTT CTTCCCAACGCTCGCATTGCCAATGATAAGCCCATTACCGACTTCGAGGTCCCTGTCGAGGCTGTCGAACGCGCA AGTGGCCTCGAGTTCGCCACCAAGTTGCCCGTTCAGAGGAGGCGCAGACTCTGCGCTGATACCGCTTGCGCTCTC GTCATTCGTGATTACGCTGAGAGGCAAAAGGCTTTTGCAAAGAATGACAAGCGGCCTGTCCCTTCCACGCCCAAG TCTTGA |
| Gene | >Ophio5|6223 ATGTCCAAATCCACGCTCGCCATGTTTGCTGCTCTTGGTGCCGGGGGCGGAGCCGCCTTGACGGCCGCCGTTTAC TCTATACGGTCGAGTTATGCGTCTTCGGAGAGTGGTGGTAGCAGCAAAGTTGATTCCTCGGTGGCTACGTCGTCA CGACCTTCTTCGGCTGAGATTTTCGGTCCTTCCCCTACCACCGTGGCCGCCGCCGCCGCGGCAGCAGCAGCAACA CGCAATCCCGTCGATCCAGCCGGCCTTTTCGAATATGGCTTTCCGGGACCGGTGTCGGATCTCGCGTTCCGGTCG GCGCTGGTATCGAGTTACGATCGTCGAACGCGTAACCCGCACTGGGTTGTCGAGCATATCACGCCCGCGTCTCTG GCTTTACGCGAGGGTGACCGGCAGTCTAGCGCGTTTGTGGAAGATGACATGGTGCCGGCCAAGTTTCGCGCTCTG TTGCGTGACTACTTTCGCAGCGGATATGATCGCGGTCATCAGGTTCCGGCCGCGGATGCAAAGTGGTCGCAAACC GCCATGGACGACACCTTTTATCTCTCCAACATGTGTCCCCAGGTCGGAGAGGGCTTCAACCGCGACTACTGGGCT CACTTTGAAGACTTCTGTCGTCGCCTAACGGTCCAGTATCCTTCCGTCCGAATCGTTACCGGACCGCTTTACCTA CCGCGCAAAGACCCCGTCGACAACAAGTGGTACGTCCGGTACGAAATGATAGGCAGTCCGCCCTCCGTCGCCGTC CCGACGCATTTTTACAAGGTCATCTTCGCCGAGGATGGAAAGGCTGATGGCAATGTCGCCATCGGTGCCTTTGTT CTTCCCAACGCTCGCATTGCCAATGATAAGCCCATTACCGACTTCGAGGTCCCTGTCGAGGCTGTCGAACGCGCA AGTGGCCTCGAGTTCGCCACCAAGTTGCCCGTTCAGAGGAGGCGCAGACTCTGCGCTGATACCGCTTGCGCTCTC GTCATTCGTGATTACGCTGAGAGGCAAAAGGCTTTTGCAAAGAATGACAAGCGGCCTGTCCCTTCCACGCCCAAG TCTTGA |