© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6220 |
| Gene name | |
| Location | scaffold_533:6889..7687 |
| Strand | + |
| Gene length (bp) | 798 |
| Transcript length (bp) | 798 |
| Coding sequence length (bp) | 795 |
| Protein length (aa) | 265 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04140 | ICMT | Isoprenylcysteine carboxyl methyltransferase (ICMT) family | 9.4E-29 | 151 | 244 |
| PF04191 | PEMT | Phospholipid methyltransferase | 9.3E-11 | 147 | 247 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9WVM4|ICMT_RAT | Protein-S-isoprenylcysteine O-methyltransferase (Fragment) OS=Rattus norvegicus GN=Icmt PE=1 SV=1 | 42 | 265 | 3.0E-50 |
| sp|Q9EQK7|ICMT_MOUSE | Protein-S-isoprenylcysteine O-methyltransferase OS=Mus musculus GN=Icmt PE=2 SV=2 | 42 | 265 | 4.0E-50 |
| sp|O60725|ICMT_HUMAN | Protein-S-isoprenylcysteine O-methyltransferase OS=Homo sapiens GN=ICMT PE=1 SV=1 | 42 | 265 | 7.0E-49 |
| sp|O12947|ICMT_XENLA | Protein-S-isoprenylcysteine O-methyltransferase OS=Xenopus laevis GN=icmt PE=2 SV=1 | 36 | 265 | 8.0E-49 |
| sp|P32584|STE14_YEAST | Protein-S-isoprenylcysteine O-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE14 PE=1 SV=1 | 77 | 264 | 4.0E-45 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9WVM4|ICMT_RAT | Protein-S-isoprenylcysteine O-methyltransferase (Fragment) OS=Rattus norvegicus GN=Icmt PE=1 SV=1 | 42 | 265 | 3.0E-50 |
| sp|Q9EQK7|ICMT_MOUSE | Protein-S-isoprenylcysteine O-methyltransferase OS=Mus musculus GN=Icmt PE=2 SV=2 | 42 | 265 | 4.0E-50 |
| sp|O60725|ICMT_HUMAN | Protein-S-isoprenylcysteine O-methyltransferase OS=Homo sapiens GN=ICMT PE=1 SV=1 | 42 | 265 | 7.0E-49 |
| sp|O12947|ICMT_XENLA | Protein-S-isoprenylcysteine O-methyltransferase OS=Xenopus laevis GN=icmt PE=2 SV=1 | 36 | 265 | 8.0E-49 |
| sp|P32584|STE14_YEAST | Protein-S-isoprenylcysteine O-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE14 PE=1 SV=1 | 77 | 264 | 4.0E-45 |
| sp|P87014|MAM4_SCHPO | Protein-S-isoprenylcysteine O-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mam4 PE=3 SV=1 | 77 | 265 | 9.0E-40 |
| sp|Q558K8|ICMT_DICDI | Protein-S-isoprenylcysteine O-methyltransferase OS=Dictyostelium discoideum GN=icmt-1 PE=2 SV=2 | 64 | 264 | 1.0E-31 |
| sp|Q93W54|ICMTB_ARATH | Protein-S-isoprenylcysteine O-methyltransferase B OS=Arabidopsis thaliana GN=ICMTB PE=1 SV=1 | 99 | 262 | 7.0E-27 |
| sp|Q7XSR9|ICMT_ORYSJ | Probable protein-S-isoprenylcysteine O-methyltransferase OS=Oryza sativa subsp. japonica GN=ICMT PE=3 SV=2 | 77 | 265 | 5.0E-26 |
| sp|A2XX73|ICMT_ORYSI | Probable protein-S-isoprenylcysteine O-methyltransferase OS=Oryza sativa subsp. indica GN=ICMT PE=3 SV=2 | 77 | 265 | 5.0E-26 |
| sp|Q9FMW9|ICMTA_ARATH | Protein-S-isoprenylcysteine O-methyltransferase A OS=Arabidopsis thaliana GN=ICMTA PE=1 SV=1 | 67 | 262 | 2.0E-23 |
| sp|P29940|YCB7_PSEDE | PEMT/PEM2 methyltransferase family protein OS=Pseudomonas denitrificans PE=3 SV=1 | 139 | 258 | 2.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006481 | C-terminal protein methylation | Yes |
| GO:0004671 | protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0016740 | transferase activity | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0043414 | macromolecule methylation | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0018410 | C-terminal protein amino acid modification | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| GO:0008171 | O-methyltransferase activity | No |
| GO:0008150 | biological_process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0032259 | methylation | No |
| GO:0008168 | methyltransferase activity | No |
| GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0051998 | protein carboxyl O-methyltransferase activity | No |
| GO:0006479 | protein methylation | No |
| GO:0036211 | protein modification process | No |
| GO:0008276 | protein methyltransferase activity | No |
| GO:0010340 | carboxyl-O-methyltransferase activity | No |
| GO:0019538 | protein metabolic process | No |
| GO:0003880 | protein C-terminal carboxyl O-methyltransferase activity | No |
| GO:0009987 | cellular process | No |
| GO:0008213 | protein alkylation | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043687 | post-translational protein modification | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.0506 | 0.2396 | 0.0127 | 0.0541 | 0.117 | 0.0417 | 0.8221 | 0.2232 | 0.3399 | 0.0316 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 42 | 64 | 22 |
| 2 | 71 | 93 | 22 |
| 3 | 113 | 132 | 19 |
| 4 | 137 | 159 | 22 |
| 5 | 209 | 231 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4192 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6220 MDHEAPPLQRLSNPPRPCSPASSEDDDLKPFYPGQPSSLSGIAIRAFSLGIAFATGALLTASILFLTDSPLWRVP FFLVPLSAFHFLEFWTTAEANTPRAGIDSFLLTANWPSYAIAHSAAFVEAALVGFFFPRRQWAPFHSGPLLVALG LLLVVVGQAVRSCAMLQAGLSFNHRVQTKKAGSHTLVTTGIYALLRHPSYFGFFYWSLGTQLVLGNVVCFAVYAA VLWNFFRARIGMEESKLIEFFQDDYVQYRRRVRTMLPAIP |
| Coding | >Ophio5|6220 ATGGACCATGAGGCGCCGCCTCTCCAGCGGCTTTCCAACCCCCCTCGCCCCTGTTCACCCGCCTCCTCCGAAGAC GATGACCTCAAGCCCTTCTACCCAGGCCAGCCCAGCTCCCTCTCCGGCATCGCCATTCGCGCCTTTAGCCTCGGG ATCGCCTTCGCTACGGGCGCCCTACTGACCGCCTCCATCCTCTTTCTCACCGATAGCCCTCTCTGGCGCGTCCCC TTCTTCCTCGTCCCCCTATCCGCCTTTCACTTCCTAGAGTTCTGGACCACCGCCGAGGCAAACACTCCCCGTGCC GGCATCGACAGCTTCCTCCTAACGGCCAACTGGCCGTCGTACGCCATCGCACACTCCGCTGCCTTCGTCGAGGCC GCACTCGTCGGCTTCTTCTTCCCCCGCCGTCAATGGGCGCCTTTCCACTCGGGCCCTCTTCTCGTCGCTCTCGGT CTCCTACTTGTCGTCGTCGGCCAGGCTGTCCGCTCTTGTGCCATGCTTCAGGCCGGCCTTAGCTTCAATCACCGC GTGCAGACGAAAAAGGCTGGCTCGCATACTCTCGTCACCACCGGCATTTACGCCCTCCTGCGCCATCCCAGCTAC TTTGGCTTTTTCTACTGGAGCCTGGGCACCCAGCTTGTGCTCGGCAACGTCGTCTGTTTCGCCGTCTACGCAGCT GTGCTGTGGAACTTTTTCCGGGCCCGAATTGGCATGGAAGAGTCCAAGCTCATTGAGTTCTTTCAGGACGACTAT GTCCAGTACCGGCGCAGGGTCAGGACCATGCTACCCGCCATACCA |
| Transcript | >Ophio5|6220 ATGGACCATGAGGCGCCGCCTCTCCAGCGGCTTTCCAACCCCCCTCGCCCCTGTTCACCCGCCTCCTCCGAAGAC GATGACCTCAAGCCCTTCTACCCAGGCCAGCCCAGCTCCCTCTCCGGCATCGCCATTCGCGCCTTTAGCCTCGGG ATCGCCTTCGCTACGGGCGCCCTACTGACCGCCTCCATCCTCTTTCTCACCGATAGCCCTCTCTGGCGCGTCCCC TTCTTCCTCGTCCCCCTATCCGCCTTTCACTTCCTAGAGTTCTGGACCACCGCCGAGGCAAACACTCCCCGTGCC GGCATCGACAGCTTCCTCCTAACGGCCAACTGGCCGTCGTACGCCATCGCACACTCCGCTGCCTTCGTCGAGGCC GCACTCGTCGGCTTCTTCTTCCCCCGCCGTCAATGGGCGCCTTTCCACTCGGGCCCTCTTCTCGTCGCTCTCGGT CTCCTACTTGTCGTCGTCGGCCAGGCTGTCCGCTCTTGTGCCATGCTTCAGGCCGGCCTTAGCTTCAATCACCGC GTGCAGACGAAAAAGGCTGGCTCGCATACTCTCGTCACCACCGGCATTTACGCCCTCCTGCGCCATCCCAGCTAC TTTGGCTTTTTCTACTGGAGCCTGGGCACCCAGCTTGTGCTCGGCAACGTCGTCTGTTTCGCCGTCTACGCAGCT GTGCTGTGGAACTTTTTCCGGGCCCGAATTGGCATGGAAGAGTCCAAGCTCATTGAGTTCTTTCAGGACGACTAT GTCCAGTACCGGCGCAGGGTCAGGACCATGCTACCCGCCATACCATGA |
| Gene | >Ophio5|6220 ATGGACCATGAGGCGCCGCCTCTCCAGCGGCTTTCCAACCCCCCTCGCCCCTGTTCACCCGCCTCCTCCGAAGAC GATGACCTCAAGCCCTTCTACCCAGGCCAGCCCAGCTCCCTCTCCGGCATCGCCATTCGCGCCTTTAGCCTCGGG ATCGCCTTCGCTACGGGCGCCCTACTGACCGCCTCCATCCTCTTTCTCACCGATAGCCCTCTCTGGCGCGTCCCC TTCTTCCTCGTCCCCCTATCCGCCTTTCACTTCCTAGAGTTCTGGACCACCGCCGAGGCAAACACTCCCCGTGCC GGCATCGACAGCTTCCTCCTAACGGCCAACTGGCCGTCGTACGCCATCGCACACTCCGCTGCCTTCGTCGAGGCC GCACTCGTCGGCTTCTTCTTCCCCCGCCGTCAATGGGCGCCTTTCCACTCGGGCCCTCTTCTCGTCGCTCTCGGT CTCCTACTTGTCGTCGTCGGCCAGGCTGTCCGCTCTTGTGCCATGCTTCAGGCCGGCCTTAGCTTCAATCACCGC GTGCAGACGAAAAAGGCTGGCTCGCATACTCTCGTCACCACCGGCATTTACGCCCTCCTGCGCCATCCCAGCTAC TTTGGCTTTTTCTACTGGAGCCTGGGCACCCAGCTTGTGCTCGGCAACGTCGTCTGTTTCGCCGTCTACGCAGCT GTGCTGTGGAACTTTTTCCGGGCCCGAATTGGCATGGAAGAGTCCAAGCTCATTGAGTTCTTTCAGGACGACTAT GTCCAGTACCGGCGCAGGGTCAGGACCATGCTACCCGCCATACCATGA |