Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6219
Gene name
Locationscaffold_533:5573..6075
Strand+
Gene length (bp)502
Transcript length (bp)429
Coding sequence length (bp)426
Protein length (aa) 142

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10190 Tmemb_170 Putative transmembrane protein 170 5.5E-24 38 137

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q06537|YP153_YEAST Uncharacterized protein YPR153W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPR153W PE=2 SV=2 5 142 2.0E-18

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.5

Transmembrane Domains

Domain # Start End Length
1 44 66 22
2 79 101 22
3 116 138 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6219
MPYPNDPPPGYHTPPWPSLGLPILGDHTPDKRHTLFTVGASWRFTLLWTLVTYAVVHVAVVLVAFCTHGWKRASW
KYTWALPIIYLIVAGIEAVFAGSVVGLMLGAIYRAGYHAMNTWIPFVWGLINVLVLIVSSFSFSGGL
Coding >Ophio5|6219
ATGCCGTACCCCAACGACCCCCCACCCGGCTACCACACCCCGCCCTGGCCATCTCTCGGACTGCCCATCCTCGGC
GACCACACGCCGGATAAGCGGCACACGCTCTTCACCGTCGGCGCCTCGTGGCGCTTCACGCTGCTGTGGACGCTC
GTCACCTACGCCGTCGTCCATGTCGCCGTCGTCCTCGTCGCCTTCTGTACCCATGGCTGGAAGCGGGCGTCGTGG
AAGTATACGTGGGCGCTTCCCATCATCTACCTCATCGTTGCTGGTATCGAGGCTGTCTTTGCCGGTAGCGTTGTC
GGCTTAATGCTGGGTGCCATCTACAGGGCTGGCTATCATGCCATGAACACTTGGATCCCCTTTGTATGGGGACTC
ATCAATGTTCTGGTCCTCATCGTCTCTTCATTTTCCTTTTCAGGTGGACTT
Transcript >Ophio5|6219
ATGCCGTACCCCAACGACCCCCCACCCGGCTACCACACCCCGCCCTGGCCATCTCTCGGACTGCCCATCCTCGGC
GACCACACGCCGGATAAGCGGCACACGCTCTTCACCGTCGGCGCCTCGTGGCGCTTCACGCTGCTGTGGACGCTC
GTCACCTACGCCGTCGTCCATGTCGCCGTCGTCCTCGTCGCCTTCTGTACCCATGGCTGGAAGCGGGCGTCGTGG
AAGTATACGTGGGCGCTTCCCATCATCTACCTCATCGTTGCTGGTATCGAGGCTGTCTTTGCCGGTAGCGTTGTC
GGCTTAATGCTGGGTGCCATCTACAGGGCTGGCTATCATGCCATGAACACTTGGATCCCCTTTGTATGGGGACTC
ATCAATGTTCTGGTCCTCATCGTCTCTTCATTTTCCTTTTCAGGTGGACTTTGA
Gene >Ophio5|6219
ATGCCGTACCCCAACGACCCCCCACCCGGCTACCACACCCCGCCCTGGCCATCTCTCGGACTGCCCATCCTCGGC
GACCACACGCCGGATAAGCGGCACACGCTCTTCACCGTCGGCGCCTCGTGGCGCTTCACGCTGCTGTGGACGCTC
GTCACCTACGCCGTCGTCCATGTCGCCGTCGTCCTCGTCGCCTTCTGTACCCATGGCTGGAAGCGGGCGTCGTGG
AAGTATACGTGGGCGCTTCCCATCATCTACCTCATCGTTGCTGGTATCGAGGCTGTCTTTGCCGGTAGCGTTGTC
GGCTTAATGTATGCTTCCCGCTTTCGAGTTTTTTTTTCTGCCTCTTCTCTTCTCTTCCTTTCGGCTGACGAAGCC
GTTCAGGCTGGGTGCCATCTACAGGGCTGGCTATCATGCCATGAACACTTGGATCCCCTTTGTATGGGGACTCAT
CAATGTTCTGGTCCTCATCGTCTCTTCATTTTCCTTTTCAGGTGGACTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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