Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|6172
Gene name
Location	scaffold_528:8160..9648
Strand	-
Gene length (bp)	1488
Transcript length (bp)	1488
Coding sequence length (bp)	1485
Protein length (aa)	495

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF08546	ApbA_C	Ketopantoate reductase PanE/ApbA C terminal	9.8E-22	331	467
PF02558	ApbA	Ketopantoate reductase PanE/ApbA	4.1E-16	91	222

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9HDU6\|PANE_SCHPO	Probable 2-dehydropantoate 2-reductase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPB2B2.09c PE=3 SV=1	91	468	2.0E-16

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 16	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	7.07	2.33	11.80
CcL	In ants, during behavior modification	6.24	1.80	10.68
CcD	In ants, recently dead	5.93	1.78	10.08

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.755903	no
SC16a	CcD	0.651086	no
CcL	CcD	0.904202	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|6172 MARPVLLRLHSTTSSSPVRFFHSTSAPPRSSSSSSSSNNKSATTKKPGWLTALMDASPGVGPQLYAWNASNVETC TTPVPPPSTTESRGRIYIVGGGNIGRLFAICLARLSLPITLVVKRTTQLADYASHGIHLVKPSSSSSSSSSSSSS SSSSCSTGSTTAPVSVEYWSETPPDHGPVRTVEPIRNLIVATKASAAVPAIDRLRRYLGRESVVVLAHNGLCRLW HPDGALYKALRWPPAADGPLFMAAVLSHGLWATDSRTSIHAAVGRVLFGSLCAADADASAASDSDLASSPRRPHS SRLASGPDPHLTRSLLSAPSLHAELLPPSELWLSQLEKMVYNSTINPLTSLLRCPNNELLSSPTRSRIVNRLLSE TSRILTTLIALRAPVPLPPRFSPSDFAADSLRAKLDTFIPAVGPNHSSMLQHLRAGVQTEVRDFNGWLVETAADL VPGFDPRTHRILVELVEAAKADDAPWTDHQLGRLLLSSSPSSSLP
Coding	>Ophio5\|6172 ATGGCACGACCAGTACTGCTACGGCTGCACAGCACGACAAGTTCGTCCCCAGTTCGTTTTTTCCATTCGACCTCG GCTCCTCCTCGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAGTCGGCCACGACGAAGAAGCCCGGCTGGCTC ACGGCGCTCATGGACGCATCTCCCGGTGTAGGACCGCAGCTGTACGCCTGGAACGCAAGTAACGTCGAGACATGC ACGACGCCGGTTCCGCCTCCTTCGACGACCGAGAGTAGAGGACGAATCTACATCGTGGGCGGCGGTAATATCGGA CGCCTGTTCGCCATCTGTCTCGCTAGGCTATCCCTTCCCATCACCCTGGTGGTGAAGCGCACGACGCAGCTAGCA GACTACGCCTCCCACGGCATCCATCTCGTCAAGCCCTCTTCCTCCTCTTCCTCTTCCTCCTCCTCCTCGTCCTCC TCGTCCTCCTCTTGCAGCACAGGGTCGACCACGGCCCCGGTCTCGGTAGAGTACTGGTCAGAAACGCCGCCCGAC CACGGCCCCGTCCGTACCGTAGAACCGATACGGAACCTCATCGTCGCCACCAAGGCTTCCGCCGCCGTGCCGGCT ATAGATAGATTGCGGCGCTACCTCGGACGGGAGTCGGTCGTCGTCTTGGCTCATAATGGCCTCTGTCGACTTTGG CACCCAGACGGCGCCCTGTACAAGGCTTTGCGCTGGCCGCCCGCTGCTGACGGCCCGCTCTTTATGGCTGCTGTG CTTTCGCATGGCTTGTGGGCGACGGATTCGCGGACCAGTATCCATGCTGCCGTCGGACGGGTACTCTTTGGTTCC CTTTGTGCTGCTGATGCTGATGCTTCCGCCGCCTCCGACTCGGATCTTGCCTCCTCCCCCCGTCGTCCGCACTCT TCCCGTCTTGCCTCCGGCCCGGATCCCCATCTCACCCGCTCACTGCTCTCCGCCCCCTCTCTTCACGCCGAACTC CTCCCCCCCTCGGAGCTATGGCTAAGCCAGCTAGAGAAGATGGTGTACAATAGCACCATCAACCCGCTAACCTCC CTCCTGCGCTGCCCCAACAACGAGCTCCTCTCGTCCCCGACCAGGTCCCGAATCGTGAACCGCCTCCTGTCGGAA ACGAGCCGCATCCTCACCACCCTCATCGCCCTCCGCGCCCCCGTTCCCCTTCCCCCCCGTTTCTCCCCTTCCGAC TTCGCTGCCGATAGCCTTCGTGCTAAACTCGACACCTTCATCCCCGCTGTCGGCCCTAATCATAGCTCCATGTTG CAGCATCTTCGTGCCGGCGTCCAGACCGAGGTTCGCGACTTTAATGGCTGGCTGGTCGAGACCGCTGCTGACCTG GTCCCCGGCTTTGATCCCCGCACCCATCGCATCCTCGTCGAGCTGGTCGAGGCCGCTAAAGCGGACGATGCGCCT TGGACCGATCACCAACTCGGCCGTCTCTTGCTTTCTTCATCACCTTCTTCCTCTCTACCT
Transcript	>Ophio5\|6172 ATGGCACGACCAGTACTGCTACGGCTGCACAGCACGACAAGTTCGTCCCCAGTTCGTTTTTTCCATTCGACCTCG GCTCCTCCTCGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAGTCGGCCACGACGAAGAAGCCCGGCTGGCTC ACGGCGCTCATGGACGCATCTCCCGGTGTAGGACCGCAGCTGTACGCCTGGAACGCAAGTAACGTCGAGACATGC ACGACGCCGGTTCCGCCTCCTTCGACGACCGAGAGTAGAGGACGAATCTACATCGTGGGCGGCGGTAATATCGGA CGCCTGTTCGCCATCTGTCTCGCTAGGCTATCCCTTCCCATCACCCTGGTGGTGAAGCGCACGACGCAGCTAGCA GACTACGCCTCCCACGGCATCCATCTCGTCAAGCCCTCTTCCTCCTCTTCCTCTTCCTCCTCCTCCTCGTCCTCC TCGTCCTCCTCTTGCAGCACAGGGTCGACCACGGCCCCGGTCTCGGTAGAGTACTGGTCAGAAACGCCGCCCGAC CACGGCCCCGTCCGTACCGTAGAACCGATACGGAACCTCATCGTCGCCACCAAGGCTTCCGCCGCCGTGCCGGCT ATAGATAGATTGCGGCGCTACCTCGGACGGGAGTCGGTCGTCGTCTTGGCTCATAATGGCCTCTGTCGACTTTGG CACCCAGACGGCGCCCTGTACAAGGCTTTGCGCTGGCCGCCCGCTGCTGACGGCCCGCTCTTTATGGCTGCTGTG CTTTCGCATGGCTTGTGGGCGACGGATTCGCGGACCAGTATCCATGCTGCCGTCGGACGGGTACTCTTTGGTTCC CTTTGTGCTGCTGATGCTGATGCTTCCGCCGCCTCCGACTCGGATCTTGCCTCCTCCCCCCGTCGTCCGCACTCT TCCCGTCTTGCCTCCGGCCCGGATCCCCATCTCACCCGCTCACTGCTCTCCGCCCCCTCTCTTCACGCCGAACTC CTCCCCCCCTCGGAGCTATGGCTAAGCCAGCTAGAGAAGATGGTGTACAATAGCACCATCAACCCGCTAACCTCC CTCCTGCGCTGCCCCAACAACGAGCTCCTCTCGTCCCCGACCAGGTCCCGAATCGTGAACCGCCTCCTGTCGGAA ACGAGCCGCATCCTCACCACCCTCATCGCCCTCCGCGCCCCCGTTCCCCTTCCCCCCCGTTTCTCCCCTTCCGAC TTCGCTGCCGATAGCCTTCGTGCTAAACTCGACACCTTCATCCCCGCTGTCGGCCCTAATCATAGCTCCATGTTG CAGCATCTTCGTGCCGGCGTCCAGACCGAGGTTCGCGACTTTAATGGCTGGCTGGTCGAGACCGCTGCTGACCTG GTCCCCGGCTTTGATCCCCGCACCCATCGCATCCTCGTCGAGCTGGTCGAGGCCGCTAAAGCGGACGATGCGCCT TGGACCGATCACCAACTCGGCCGTCTCTTGCTTTCTTCATCACCTTCTTCCTCTCTACCTTGA
Gene	>Ophio5\|6172 ATGGCACGACCAGTACTGCTACGGCTGCACAGCACGACAAGTTCGTCCCCAGTTCGTTTTTTCCATTCGACCTCG GCTCCTCCTCGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAGTCGGCCACGACGAAGAAGCCCGGCTGGCTC ACGGCGCTCATGGACGCATCTCCCGGTGTAGGACCGCAGCTGTACGCCTGGAACGCAAGTAACGTCGAGACATGC ACGACGCCGGTTCCGCCTCCTTCGACGACCGAGAGTAGAGGACGAATCTACATCGTGGGCGGCGGTAATATCGGA CGCCTGTTCGCCATCTGTCTCGCTAGGCTATCCCTTCCCATCACCCTGGTGGTGAAGCGCACGACGCAGCTAGCA GACTACGCCTCCCACGGCATCCATCTCGTCAAGCCCTCTTCCTCCTCTTCCTCTTCCTCCTCCTCCTCGTCCTCC TCGTCCTCCTCTTGCAGCACAGGGTCGACCACGGCCCCGGTCTCGGTAGAGTACTGGTCAGAAACGCCGCCCGAC CACGGCCCCGTCCGTACCGTAGAACCGATACGGAACCTCATCGTCGCCACCAAGGCTTCCGCCGCCGTGCCGGCT ATAGATAGATTGCGGCGCTACCTCGGACGGGAGTCGGTCGTCGTCTTGGCTCATAATGGCCTCTGTCGACTTTGG CACCCAGACGGCGCCCTGTACAAGGCTTTGCGCTGGCCGCCCGCTGCTGACGGCCCGCTCTTTATGGCTGCTGTG CTTTCGCATGGCTTGTGGGCGACGGATTCGCGGACCAGTATCCATGCTGCCGTCGGACGGGTACTCTTTGGTTCC CTTTGTGCTGCTGATGCTGATGCTTCCGCCGCCTCCGACTCGGATCTTGCCTCCTCCCCCCGTCGTCCGCACTCT TCCCGTCTTGCCTCCGGCCCGGATCCCCATCTCACCCGCTCACTGCTCTCCGCCCCCTCTCTTCACGCCGAACTC CTCCCCCCCTCGGAGCTATGGCTAAGCCAGCTAGAGAAGATGGTGTACAATAGCACCATCAACCCGCTAACCTCC CTCCTGCGCTGCCCCAACAACGAGCTCCTCTCGTCCCCGACCAGGTCCCGAATCGTGAACCGCCTCCTGTCGGAA ACGAGCCGCATCCTCACCACCCTCATCGCCCTCCGCGCCCCCGTTCCCCTTCCCCCCCGTTTCTCCCCTTCCGAC TTCGCTGCCGATAGCCTTCGTGCTAAACTCGACACCTTCATCCCCGCTGTCGGCCCTAATCATAGCTCCATGTTG CAGCATCTTCGTGCCGGCGTCCAGACCGAGGTTCGCGACTTTAATGGCTGGCTGGTCGAGACCGCTGCTGACCTG GTCCCCGGCTTTGATCCCCGCACCCATCGCATCCTCGTCGAGCTGGTCGAGGCCGCTAAAGCGGACGATGCGCCT TGGACCGATCACCAACTCGGCCGTCTCTTGCTTTCTTCATCACCTTCTTCCTCTCTACCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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