© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|611 |
| Gene name | |
| Location | scaffold_116:35657..37127 |
| Strand | + |
| Gene length (bp) | 1470 |
| Transcript length (bp) | 1386 |
| Coding sequence length (bp) | 1383 |
| Protein length (aa) | 461 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06432 | GPI2 | Phosphatidylinositol N-acetylglucosaminyltransferase | 1.3E-135 | 60 | 446 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59802|GPI2_SCHPO | Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi2 PE=3 SV=1 | 259 | 450 | 5.0E-35 |
| sp|Q54M40|PIGC_DICDI | Putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Dictyostelium discoideum GN=pigC PE=3 SV=1 | 275 | 451 | 4.0E-33 |
| sp|Q92535|PIGC_HUMAN | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Homo sapiens GN=PIGC PE=2 SV=1 | 265 | 449 | 5.0E-25 |
| sp|Q5PQQ4|PIGC_RAT | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Rattus norvegicus GN=Pigc PE=2 SV=1 | 267 | 449 | 6.0E-25 |
| sp|Q9CXR4|PIGC_MOUSE | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Mus musculus GN=Pigc PE=2 SV=1 | 267 | 449 | 2.0E-24 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59802|GPI2_SCHPO | Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi2 PE=3 SV=1 | 259 | 450 | 5.0E-35 |
| sp|Q54M40|PIGC_DICDI | Putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Dictyostelium discoideum GN=pigC PE=3 SV=1 | 275 | 451 | 4.0E-33 |
| sp|Q92535|PIGC_HUMAN | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Homo sapiens GN=PIGC PE=2 SV=1 | 265 | 449 | 5.0E-25 |
| sp|Q5PQQ4|PIGC_RAT | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Rattus norvegicus GN=Pigc PE=2 SV=1 | 267 | 449 | 6.0E-25 |
| sp|Q9CXR4|PIGC_MOUSE | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Mus musculus GN=Pigc PE=2 SV=1 | 267 | 449 | 2.0E-24 |
| sp|Q3ZBX1|PIGC_BOVIN | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Bos taurus GN=PIGC PE=2 SV=1 | 267 | 449 | 2.0E-24 |
| sp|O59802|GPI2_SCHPO | Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi2 PE=3 SV=1 | 46 | 148 | 1.0E-15 |
| sp|P46961|GPI2_YEAST | Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI2 PE=1 SV=2 | 245 | 452 | 5.0E-13 |
| sp|Q92535|PIGC_HUMAN | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Homo sapiens GN=PIGC PE=2 SV=1 | 53 | 148 | 2.0E-11 |
| sp|Q5PQQ4|PIGC_RAT | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Rattus norvegicus GN=Pigc PE=2 SV=1 | 60 | 148 | 2.0E-11 |
| sp|Q9CXR4|PIGC_MOUSE | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Mus musculus GN=Pigc PE=2 SV=1 | 60 | 148 | 2.0E-11 |
| sp|Q3ZBX1|PIGC_BOVIN | Phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Bos taurus GN=PIGC PE=2 SV=1 | 60 | 148 | 5.0E-11 |
| sp|Q54M40|PIGC_DICDI | Putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Dictyostelium discoideum GN=pigC PE=3 SV=1 | 60 | 119 | 6.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006506 | GPI anchor biosynthetic process | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0006497 | protein lipidation | No |
| GO:0006793 | phosphorus metabolic process | No |
| GO:0046474 | glycerophospholipid biosynthetic process | No |
| GO:0046488 | phosphatidylinositol metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006650 | glycerophospholipid metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0006664 | glycolipid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008654 | phospholipid biosynthetic process | No |
| GO:0006644 | phospholipid metabolic process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006796 | phosphate-containing compound metabolic process | No |
| GO:0009247 | glycolipid biosynthetic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0006661 | phosphatidylinositol biosynthetic process | No |
| GO:0090407 | organophosphate biosynthetic process | No |
| GO:0045017 | glycerolipid biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0046467 | membrane lipid biosynthetic process | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0006643 | membrane lipid metabolic process | No |
| GO:0006505 | GPI anchor metabolic process | No |
| GO:0019637 | organophosphate metabolic process | No |
| GO:1901137 | carbohydrate derivative biosynthetic process | No |
| GO:0036211 | protein modification process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0019538 | protein metabolic process | No |
| GO:1903509 | liposaccharide metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0046486 | glycerolipid metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum|Golgi apparatus | Transmembrane domain | 0.116 | 0.1947 | 0.0227 | 0.2039 | 0.1901 | 0.0065 | 0.7399 | 0.2885 | 0.7736 | 0.0169 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 104 | 123 | 19 |
| 2 | 299 | 321 | 22 |
| 3 | 351 | 368 | 17 |
| 4 | 381 | 400 | 19 |
| 5 | 410 | 432 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5860 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|611 MPSPTDDEASMPAPSFARSHLSPHHATALSPPPPLPLLPRAVGEPLNHGRNRSRRRKRAWKKLMWVKQSYPDNYT DQATFLENLQRNPRLKPYDFWPLVNDSTVILQHVCSVIIFIVCFVAIFQERVSPVSVVSCGSLATFLGWLLWERW VAEEDLQDDVGVGVMVRSGSIRRRGRAASLRRPLRSDASPSTSTMTPATATTKAMAATGKLTSPTPDVRTWAAIP AEPQAADAAAAAAAAAAAAGAPPCPPAPDPVEAPGVNRVHERLETIKSALLIFSTLLGLSPILKSLTRSTSSDSI WAMSFWLLALNVFFFDYSGGVGAKFPASLSTNAALMASTVLASRLPSTKQVFSLTLFSIEVFGLFPVFRRHVRHR SWRYHVVLTVLLVLGAGLGVGIVLGDGRWPGKSGSVGMVIGVVMAAIAAGGCSWWLIGLQKYKNEIRGPWDPARP IIMSRTRWDSR |
| Coding | >Ophio5|611 ATGCCGTCGCCGACCGACGATGAGGCTTCTATGCCGGCACCCTCGTTTGCGCGCTCGCACCTCTCGCCTCACCAT GCGACAGCGCTCTCGCCTCCGCCGCCTCTTCCTCTGCTGCCGCGTGCCGTCGGCGAACCACTGAATCATGGTCGG AATCGGAGTCGACGGAGGAAACGGGCGTGGAAGAAGCTGATGTGGGTGAAGCAGTCATATCCGGACAACTACACC GATCAAGCTACCTTTCTCGAGAACCTACAGCGAAATCCGCGGCTTAAGCCGTACGACTTTTGGCCTTTGGTTAAT GACTCGACCGTCATCTTGCAACATGTCTGCTCCGTCATCATCTTCATTGTCTGCTTCGTCGCCATCTTTCAAGAG CGCGTCTCGCCTGTGTCCGTCGTCAGCTGTGGCAGTCTGGCTACCTTTCTCGGCTGGCTCTTGTGGGAGCGATGG GTTGCCGAGGAGGATCTGCAGGATGATGTTGGTGTTGGCGTCATGGTTCGCAGTGGAAGCATTCGTCGAAGAGGT CGTGCTGCCAGCCTTCGCCGTCCGCTGCGATCCGATGCGTCGCCCTCAACTTCGACCATGACGCCCGCGACGGCA ACTACAAAGGCAATGGCGGCTACGGGAAAATTGACGAGTCCGACGCCCGACGTCAGGACTTGGGCGGCAATACCC GCCGAGCCGCAGGCTGCTGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGGTGCTCCTCCCTGCCCG CCGGCTCCGGACCCGGTCGAGGCCCCGGGTGTCAACCGGGTGCACGAGCGGCTCGAGACGATCAAGTCTGCGCTG CTCATCTTCAGCACCTTGTTGGGCCTAAGCCCGATCCTCAAGTCTCTGACGCGGTCGACGTCGAGCGACAGCATC TGGGCCATGTCCTTCTGGCTGCTGGCCCTCAACGTCTTCTTCTTCGACTACTCGGGTGGCGTGGGCGCCAAGTTC CCGGCCTCTCTGTCGACCAATGCGGCGCTGATGGCGTCGACGGTCCTGGCCAGCCGTCTGCCGTCGACGAAACAG GTCTTTAGCCTGACGCTCTTCAGCATCGAGGTCTTCGGCCTCTTCCCCGTCTTCCGTCGCCACGTGCGCCATCGC AGCTGGAGGTATCACGTCGTGCTGACGGTGCTACTGGTGTTGGGGGCCGGACTGGGCGTCGGCATCGTCCTCGGC GACGGGCGATGGCCCGGCAAGAGCGGCTCGGTCGGCATGGTCATCGGCGTCGTCATGGCCGCCATCGCCGCCGGC GGTTGCAGCTGGTGGCTGATTGGGCTCCAAAAATACAAGAATGAGATTCGCGGGCCTTGGGATCCGGCGAGGCCC ATCATCATGAGCAGGACACGGTGGGACAGCCGG |
| Transcript | >Ophio5|611 ATGCCGTCGCCGACCGACGATGAGGCTTCTATGCCGGCACCCTCGTTTGCGCGCTCGCACCTCTCGCCTCACCAT GCGACAGCGCTCTCGCCTCCGCCGCCTCTTCCTCTGCTGCCGCGTGCCGTCGGCGAACCACTGAATCATGGTCGG AATCGGAGTCGACGGAGGAAACGGGCGTGGAAGAAGCTGATGTGGGTGAAGCAGTCATATCCGGACAACTACACC GATCAAGCTACCTTTCTCGAGAACCTACAGCGAAATCCGCGGCTTAAGCCGTACGACTTTTGGCCTTTGGTTAAT GACTCGACCGTCATCTTGCAACATGTCTGCTCCGTCATCATCTTCATTGTCTGCTTCGTCGCCATCTTTCAAGAG CGCGTCTCGCCTGTGTCCGTCGTCAGCTGTGGCAGTCTGGCTACCTTTCTCGGCTGGCTCTTGTGGGAGCGATGG GTTGCCGAGGAGGATCTGCAGGATGATGTTGGTGTTGGCGTCATGGTTCGCAGTGGAAGCATTCGTCGAAGAGGT CGTGCTGCCAGCCTTCGCCGTCCGCTGCGATCCGATGCGTCGCCCTCAACTTCGACCATGACGCCCGCGACGGCA ACTACAAAGGCAATGGCGGCTACGGGAAAATTGACGAGTCCGACGCCCGACGTCAGGACTTGGGCGGCAATACCC GCCGAGCCGCAGGCTGCTGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGGTGCTCCTCCCTGCCCG CCGGCTCCGGACCCGGTCGAGGCCCCGGGTGTCAACCGGGTGCACGAGCGGCTCGAGACGATCAAGTCTGCGCTG CTCATCTTCAGCACCTTGTTGGGCCTAAGCCCGATCCTCAAGTCTCTGACGCGGTCGACGTCGAGCGACAGCATC TGGGCCATGTCCTTCTGGCTGCTGGCCCTCAACGTCTTCTTCTTCGACTACTCGGGTGGCGTGGGCGCCAAGTTC CCGGCCTCTCTGTCGACCAATGCGGCGCTGATGGCGTCGACGGTCCTGGCCAGCCGTCTGCCGTCGACGAAACAG GTCTTTAGCCTGACGCTCTTCAGCATCGAGGTCTTCGGCCTCTTCCCCGTCTTCCGTCGCCACGTGCGCCATCGC AGCTGGAGGTATCACGTCGTGCTGACGGTGCTACTGGTGTTGGGGGCCGGACTGGGCGTCGGCATCGTCCTCGGC GACGGGCGATGGCCCGGCAAGAGCGGCTCGGTCGGCATGGTCATCGGCGTCGTCATGGCCGCCATCGCCGCCGGC GGTTGCAGCTGGTGGCTGATTGGGCTCCAAAAATACAAGAATGAGATTCGCGGGCCTTGGGATCCGGCGAGGCCC ATCATCATGAGCAGGACACGGTGGGACAGCCGGTGA |
| Gene | >Ophio5|611 ATGCCGTCGCCGACCGACGATGAGGCTTCTATGCCGGCACCCTCGTTTGCGCGCTCGCACCTCTCGCCTCACCAT GCGACAGCGCTCTCGCCTCCGCCGCCTCTTCCTCTGCTGCCGCGTGCCGTCGGCGAACCACTGAATCATGGTCGG AATCGGAGTCGACGGAGGAAACGGGCGTGGAAGAAGCTGATGTGGGTGAAGCAGTCATGTACGTGCGCGTTTTAT TTTTCCTCCATCTTCCTCTTTATCTTTCCCCTTCGGTTTAGCTTCATGTGCTGACTTGGTTGTTTAGATCCGGAC AACTACACCGATCAAGCTACCTTTCTCGAGAACCTACAGCGAAATCCGCGGCTTAAGCCGTACGACTTTTGGCCT TTGGTTAATGACTCGACCGTCATCTTGCAACATGTCTGCTCCGTCATCATCTTCATTGTCTGCTTCGTCGCCATC TTTCAAGAGCGCGTCTCGCCTGTGTCCGTCGTCAGCTGTGGCAGTCTGGCTACCTTTCTCGGCTGGCTCTTGTGG GAGCGATGGGTTGCCGAGGAGGATCTGCAGGATGATGTTGGTGTTGGCGTCATGGTTCGCAGTGGAAGCATTCGT CGAAGAGGTCGTGCTGCCAGCCTTCGCCGTCCGCTGCGATCCGATGCGTCGCCCTCAACTTCGACCATGACGCCC GCGACGGCAACTACAAAGGCAATGGCGGCTACGGGAAAATTGACGAGTCCGACGCCCGACGTCAGGACTTGGGCG GCAATACCCGCCGAGCCGCAGGCTGCTGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGGTGCTCCT CCCTGCCCGCCGGCTCCGGACCCGGTCGAGGCCCCGGGTGTCAACCGGGTGCACGAGCGGCTCGAGACGATCAAG TCTGCGCTGCTCATCTTCAGCACCTTGTTGGGCCTAAGCCCGATCCTCAAGTCTCTGACGCGGTCGACGTCGAGC GACAGCATCTGGGCCATGTCCTTCTGGCTGCTGGCCCTCAACGTCTTCTTCTTCGACTACTCGGGTGGCGTGGGC GCCAAGTTCCCGGCCTCTCTGTCGACCAATGCGGCGCTGATGGCGTCGACGGTCCTGGCCAGCCGTCTGCCGTCG ACGAAACAGGTCTTTAGCCTGACGCTCTTCAGCATCGAGGTCTTCGGCCTCTTCCCCGTCTTCCGTCGCCACGTG CGCCATCGCAGCTGGAGGTATCACGTCGTGCTGACGGTGCTACTGGTGTTGGGGGCCGGACTGGGCGTCGGCATC GTCCTCGGCGACGGGCGATGGCCCGGCAAGAGCGGCTCGGTCGGCATGGTCATCGGCGTCGTCATGGCCGCCATC GCCGCCGGCGGTTGCAGCTGGTGGCTGATTGGGCTCCAAAAATACAAGAATGAGATTCGCGGGCCTTGGGATCCG GCGAGGCCCATCATCATGAGCAGGACACGGTGGGACAGCCGGTGA |