Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6106
Gene name
Locationscaffold_52:8193..10349
Strand+
Gene length (bp)2156
Transcript length (bp)1944
Coding sequence length (bp)1941
Protein length (aa) 647

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05686 Glyco_transf_90 Glycosyl transferase family 90 3.4E-13 362 621

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q5K8R6|CXT1_CRYNJ Beta-1,2-xylosyltransferase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CXT1 PE=1 SV=1 78 641 2.0E-48
sp|B0X1Q4|RUMI_CULQU O-glucosyltransferase rumi homolog OS=Culex quinquefasciatus GN=CPIJ013394 PE=3 SV=1 506 621 1.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 19 0.5

Transmembrane Domains

Domain # Start End Length
1 7 26 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 48.91 26.51 71.31
CcL In ants, during behavior modification 56.27 28.21 84.33
CcD In ants, recently dead 47.28 25.64 68.92

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.605229 no
SC16a CcD 0.907414 no
CcL CcD 0.507029 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6106
MRQRQCVILSALVLGAFCLYSVLLLPNSRARLMVKLPSAGGPAAAAAEAEAKPAPAPVEEEVWEEVRRPENGPQP
KPVPGTTSHPIWYLLDNARRDLDGVRRRQSTTLESAVAEYRRRYGLPPPPHFDRWFAFARENKVQLVDEFDAIHE
LLTPFWGLKPKTIRKRVREALGGDNMLLGVAIRGGRVARVEGGPDWQRNATEGMMAGFVNLLPDMDVAFNIHDEP
RVIVPHDDLARLVQRAKTETMPAARANRRPANDFSRRRPAELKADGSFDASAARGTSRFNTFAHQATWTHSRMSC
PPDSPARVLDEDERADDLGRYAVGELGFVHNATAMSDMCLTPSLSATYGFFDRPNAYSVVHDLVPVFSQSKISSY
SDIIYPSPWYWYRKVAYDEARDRPWARKADRLYWRGSTTGGFSRGGGWRRQHRQNLVHKINDGKGRALIMVDAAA
AAAAQVSSDNSPRWEVRQVKRRDYRHLIDVAFSHVGQCDPDDCEAQKRFFRVRDRVDQNDAWAYKYLLDMDGNAF
SGRFYAFLQSRSLTFKLALFREWHAEWLKPWAHYVPLSLQGDDWLDAVRFFADSSLGNNEAQRMADASRDWANKV
VRKVDMEAWFFRLLLEYARIIDDNREQLGFDPSDAQRKLSQPDADPS
Coding >Ophio5|6106
ATGCGACAGCGGCAATGCGTCATCCTCAGCGCCCTCGTCTTGGGCGCCTTCTGCCTATACTCCGTCCTACTGCTA
CCGAATAGCAGAGCACGGCTGATGGTCAAGCTGCCGTCGGCCGGAGGGCCAGCTGCGGCGGCGGCGGAAGCGGAA
GCGAAACCGGCCCCGGCCCCGGTAGAAGAGGAGGTGTGGGAGGAGGTGCGTCGGCCGGAGAACGGCCCGCAGCCT
AAGCCGGTGCCGGGAACGACGTCGCACCCGATCTGGTACCTGTTGGACAATGCGCGGCGCGACCTCGACGGCGTG
CGGCGACGGCAGTCGACGACGTTGGAATCAGCCGTGGCCGAGTACCGGAGACGATACGGCCTGCCGCCGCCGCCG
CACTTTGACCGTTGGTTCGCGTTTGCTCGCGAGAACAAGGTGCAGCTGGTGGACGAGTTCGACGCCATCCACGAG
CTGCTGACGCCCTTCTGGGGTCTCAAGCCCAAGACGATCCGGAAAAGGGTGCGGGAGGCGCTGGGAGGCGACAAC
ATGCTGCTGGGCGTCGCCATACGCGGAGGACGCGTCGCCCGCGTCGAGGGCGGGCCCGACTGGCAGCGGAACGCG
ACAGAGGGCATGATGGCCGGCTTTGTCAACCTGCTGCCGGACATGGACGTTGCCTTTAACATACACGACGAGCCG
CGCGTCATAGTCCCGCACGATGACCTAGCGAGACTTGTTCAGCGGGCCAAGACGGAGACCATGCCGGCGGCGCGG
GCGAACCGGCGACCGGCCAACGACTTCAGCCGGCGGCGTCCGGCAGAGTTGAAGGCCGACGGCTCCTTCGACGCG
TCGGCGGCGAGGGGCACGTCACGCTTCAACACGTTCGCTCATCAGGCGACCTGGACGCACTCGCGCATGTCGTGT
CCGCCGGACAGTCCCGCCCGGGTGCTGGACGAGGACGAGAGGGCCGACGACCTGGGCCGTTATGCCGTGGGCGAG
CTCGGCTTCGTCCATAACGCGACGGCCATGTCGGACATGTGTCTGACCCCGTCGCTCAGCGCGACGTACGGCTTC
TTCGACCGGCCCAACGCGTACAGCGTCGTTCACGACCTCGTCCCCGTCTTCTCCCAGTCCAAGATTTCGTCCTAC
AGCGACATCATCTACCCGTCGCCCTGGTACTGGTATCGCAAGGTGGCCTACGACGAGGCTCGAGACCGTCCGTGG
GCGCGAAAGGCCGATCGGCTCTACTGGCGCGGCTCGACCACGGGAGGCTTCAGTCGAGGCGGCGGCTGGCGGCGG
CAACATCGACAGAATCTGGTACACAAGATCAACGACGGCAAGGGCCGGGCGCTGATCATGGTCGACGCCGCCGCC
GCCGCCGCCGCCCAAGTTTCGTCGGACAATAGTCCCCGATGGGAAGTGCGACAGGTCAAACGACGCGACTATCGT
CACCTGATCGACGTGGCCTTTTCGCACGTCGGCCAATGCGACCCGGACGACTGCGAAGCCCAGAAGCGCTTCTTC
CGCGTCCGGGACCGCGTCGACCAGAACGACGCCTGGGCCTACAAGTACCTCCTGGACATGGACGGAAACGCCTTC
TCCGGCCGCTTCTACGCCTTCCTCCAGAGCCGCAGCCTGACGTTCAAGCTGGCCCTCTTCCGCGAGTGGCACGCC
GAGTGGCTCAAGCCCTGGGCTCACTACGTGCCGCTGAGCCTCCAGGGTGACGACTGGCTCGATGCCGTCCGCTTC
TTTGCCGATAGCAGCTTGGGCAATAACGAGGCGCAGCGGATGGCTGATGCGAGTCGCGACTGGGCGAACAAGGTC
GTTCGCAAGGTCGACATGGAGGCTTGGTTCTTTCGCCTGCTGCTCGAGTACGCTCGTATCATCGACGACAACAGA
GAGCAGCTCGGCTTCGATCCCTCTGACGCCCAGAGAAAGCTATCGCAGCCCGACGCCGACCCCAGC
Transcript >Ophio5|6106
ATGCGACAGCGGCAATGCGTCATCCTCAGCGCCCTCGTCTTGGGCGCCTTCTGCCTATACTCCGTCCTACTGCTA
CCGAATAGCAGAGCACGGCTGATGGTCAAGCTGCCGTCGGCCGGAGGGCCAGCTGCGGCGGCGGCGGAAGCGGAA
GCGAAACCGGCCCCGGCCCCGGTAGAAGAGGAGGTGTGGGAGGAGGTGCGTCGGCCGGAGAACGGCCCGCAGCCT
AAGCCGGTGCCGGGAACGACGTCGCACCCGATCTGGTACCTGTTGGACAATGCGCGGCGCGACCTCGACGGCGTG
CGGCGACGGCAGTCGACGACGTTGGAATCAGCCGTGGCCGAGTACCGGAGACGATACGGCCTGCCGCCGCCGCCG
CACTTTGACCGTTGGTTCGCGTTTGCTCGCGAGAACAAGGTGCAGCTGGTGGACGAGTTCGACGCCATCCACGAG
CTGCTGACGCCCTTCTGGGGTCTCAAGCCCAAGACGATCCGGAAAAGGGTGCGGGAGGCGCTGGGAGGCGACAAC
ATGCTGCTGGGCGTCGCCATACGCGGAGGACGCGTCGCCCGCGTCGAGGGCGGGCCCGACTGGCAGCGGAACGCG
ACAGAGGGCATGATGGCCGGCTTTGTCAACCTGCTGCCGGACATGGACGTTGCCTTTAACATACACGACGAGCCG
CGCGTCATAGTCCCGCACGATGACCTAGCGAGACTTGTTCAGCGGGCCAAGACGGAGACCATGCCGGCGGCGCGG
GCGAACCGGCGACCGGCCAACGACTTCAGCCGGCGGCGTCCGGCAGAGTTGAAGGCCGACGGCTCCTTCGACGCG
TCGGCGGCGAGGGGCACGTCACGCTTCAACACGTTCGCTCATCAGGCGACCTGGACGCACTCGCGCATGTCGTGT
CCGCCGGACAGTCCCGCCCGGGTGCTGGACGAGGACGAGAGGGCCGACGACCTGGGCCGTTATGCCGTGGGCGAG
CTCGGCTTCGTCCATAACGCGACGGCCATGTCGGACATGTGTCTGACCCCGTCGCTCAGCGCGACGTACGGCTTC
TTCGACCGGCCCAACGCGTACAGCGTCGTTCACGACCTCGTCCCCGTCTTCTCCCAGTCCAAGATTTCGTCCTAC
AGCGACATCATCTACCCGTCGCCCTGGTACTGGTATCGCAAGGTGGCCTACGACGAGGCTCGAGACCGTCCGTGG
GCGCGAAAGGCCGATCGGCTCTACTGGCGCGGCTCGACCACGGGAGGCTTCAGTCGAGGCGGCGGCTGGCGGCGG
CAACATCGACAGAATCTGGTACACAAGATCAACGACGGCAAGGGCCGGGCGCTGATCATGGTCGACGCCGCCGCC
GCCGCCGCCGCCCAAGTTTCGTCGGACAATAGTCCCCGATGGGAAGTGCGACAGGTCAAACGACGCGACTATCGT
CACCTGATCGACGTGGCCTTTTCGCACGTCGGCCAATGCGACCCGGACGACTGCGAAGCCCAGAAGCGCTTCTTC
CGCGTCCGGGACCGCGTCGACCAGAACGACGCCTGGGCCTACAAGTACCTCCTGGACATGGACGGAAACGCCTTC
TCCGGCCGCTTCTACGCCTTCCTCCAGAGCCGCAGCCTGACGTTCAAGCTGGCCCTCTTCCGCGAGTGGCACGCC
GAGTGGCTCAAGCCCTGGGCTCACTACGTGCCGCTGAGCCTCCAGGGTGACGACTGGCTCGATGCCGTCCGCTTC
TTTGCCGATAGCAGCTTGGGCAATAACGAGGCGCAGCGGATGGCTGATGCGAGTCGCGACTGGGCGAACAAGGTC
GTTCGCAAGGTCGACATGGAGGCTTGGTTCTTTCGCCTGCTGCTCGAGTACGCTCGTATCATCGACGACAACAGA
GAGCAGCTCGGCTTCGATCCCTCTGACGCCCAGAGAAAGCTATCGCAGCCCGACGCCGACCCCAGCTGA
Gene >Ophio5|6106
ATGCGACAGCGGCAATGCGTCATCCTCAGCGCCCTCGTCTTGGGCGCCTTCTGCCTATACTCCGTCCTACTGCTA
CCGAATAGCAGAGCACGGCTGATGGTCAAGCTGCCGTCGGCCGGAGGGCCAGCTGCGGCGGCGGCGGAAGCGGAA
GCGAAACCGGCCCCGGCCCCGGTAGAAGAGGAGGTGTGGGAGGAGGTGCGTCGGCCGGAGAACGGCCCGCAGCCT
AAGCCGGTGCCGGGAACGACGTCGCACCCGATCTGGTACCTGTTGGACAATGCGCGGCGCGACCTCGACGGCGTG
CGGCGACGGCAGTCGACGACGTTGGAATCAGCCGTGGCCGAGTACCGGAGACGATACGGCCTGCCGCCGCCGCCG
CACTTTGACCGTTGGTTCGCGTTTGCTCGCGAGAACAAGGTGCAGCTGGTGGACGAGTTCGACGCCATCCACGAG
CTGCTGACGCCCTTCTGGGGTCTCAAGCCCAAGACGATCCGGAAAAGGGTGCGGGAGGCGCTGGGAGGCGACAAC
ATGCTGCTGGGCGTCGCCATACGCGGAGGACGCGTCGCCCGCGTCGAGGGCGGGCCCGACTGGCAGCGGAACGCG
ACAGAGGGCATGATGGCCGGCTTTGTCAACCTGCTGCCGGACATGGACGTTGCCTTTAACATACACGACGAGCCG
CGCGTCATAGTCCCGCACGATGACCTAGCGAGACTTGTTCAGCGGGCCAAGACGGAGACCATGCCGGCGGCGCGG
GCGAACCGGCGACCGGCCAACGACTTCAGCCGGCGGCGTCCGGCAGAGTTGAAGGCCGACGGCTCCTTCGACGCG
TCGGCGGCGAGGGGCACGTCACGCTTCAACACGTTCGCTCATCAGGCGACCTGGACGCACTCGCGCATGTCGTGT
CCGCCGGACAGTCCCGCCCGGGTGCTGGACGAGGACGAGAGGGCCGACGACCTGGGCCGTTATGCCGTGGGCGAG
CTCGGCTTCGTCCATAACGCGACGGCCATGTCGGACATGTGTCTGACCCCGTCGCTCAGCGCGACGTACGGCTTC
TTCGACCGGCCCAACGCGTACAGCGTCGTTCACGACCTCGTCCCCGTCTTCTCCCAGTCCAAGATTTCGTCCTAC
AGCGACATCATCTACCCGTCGCCCTGGTACTGGTATCGCAAGGTGGCCTACGACGAGGCTCGAGACCGTCCGTGG
GCGCGAAAGGCCGATCGGCTCTACTGGCGCGGCTCGACCACGGGAGGCTTCAGTCGAGGCGGCGGCTGGCGGCGG
CAACATCGACAGAATCTGGTACACAAGATCAACGACGGCAAGGGCCGGGCGCTGATCATGGTCGACGCCGCCGCC
GCCGCCGCCGCCCAAGTTTCGTCGGACAATAGTCCCCGATGGGAAGTGCGACAGGTCAAACGACGCGACTATCGT
CACCTGATCGACGTGGCCTTTTCGCACGTCGGCCAATGCGACCCGGACGACTGCGAAGCCCAGAAGCGCTTCTTC
CGCGTCCGGGACCGCGTCGACCAGAACGACGCCTGGGCCTACAAGTACCTCCTGGACATGGACGGAAACGCCTTC
TCCGGCCGCTTCTACGCCTTCCTCCAGAGCCGCAGCCTGACGTTCAAGCTGGCCCTCTTCCGCGAGTGGCACGCC
GAGTGGCTCAAGCCCTGGGCTCACTACGTGCCGCTGAGCCTCCAGGGTGACGACTGGCTCGATGCCGTCCGCTTC
TTTGCCGATAGCAGCTTGGGCAATAACGAGGCGCAGCGGATGGCTGATGCGAGTCGCGACTGGGCGAACAAGGTC
GTTCGCAAGGTCGACATGGAGGCTTGGTTCTTTCGCCTGCTGCTCGAGTTAGTCTTTTTTTTTTTTTTTTCATTT
TCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCTTCCCTTCCCCCTCTTCGGTCTTGTTTCTTT
TCTTTTTCTTTTTTGTTTCTATATTGGACCTTTTCCATTCATCATCAAACCCCTCCCCCCCCCACCCCCTCTTAC
TTACTCAACTCTCACTGTTCTTTACAATTTGCAGGTACGCTCGTATCATCGACGACAACAGAGAGCAGCTCGGCT
TCGATCCCTCTGACGCCCAGAGAAAGCTATCGCAGCCCGACGCCGACCCCAGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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