© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|610 |
| Gene name | |
| Location | scaffold_116:33971..34557 |
| Strand | - |
| Gene length (bp) | 586 |
| Transcript length (bp) | 519 |
| Coding sequence length (bp) | 516 |
| Protein length (aa) | 172 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.176 | 0.1032 | 0.7751 | 0.1025 | 0.1697 | 0.0403 | 0.3373 | 0.213 | 0.2268 | 0.024 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.999762 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 112 | 129 | 17 |
| Orthofinder run ID | 4 |
| Orthogroup | 6092 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|610 MKLVSLILALGLAAFSLAAPIPAPRQLLAMDDRPVLRNPMDSLTALFAPLRILCWGPRRLRPVFDIDKESSEYMT DMNGDLLLVGTNQKLRIVGWNPSPSLFILVPRGRQPVAILVVCLWLLATCWYLARSFQDTDDAVLVLPAQSLEQR RPTPPPERGREKSAAVAGGCFR |
| Coding | >Ophio5|610 ATGAAACTCGTCTCCCTCATTCTGGCCCTTGGCCTCGCCGCCTTCAGCCTCGCCGCTCCCATCCCTGCGCCCCGT CAACTCCTGGCAATGGATGACAGGCCCGTGCTGAGGAATCCCATGGACAGCCTGACGGCCTTGTTCGCGCCCTTG CGCATCCTCTGCTGGGGCCCGCGTCGCCTCAGGCCCGTCTTCGACATCGACAAGGAGAGCTCCGAGTACATGACG GACATGAATGGCGACTTGCTGCTCGTCGGCACAAATCAAAAGCTTCGAATTGTCGGCTGGAATCCGTCGCCGAGC CTCTTTATCTTGGTTCCCCGCGGCCGTCAGCCTGTTGCCATCCTCGTCGTCTGTCTCTGGCTGCTGGCGACGTGC TGGTACTTGGCGAGGTCCTTCCAAGACACCGACGATGCTGTCCTCGTCCTCCCGGCCCAGTCCCTGGAACAGCGG CGCCCCACCCCTCCTCCAGAGCGCGGCCGAGAAAAGAGTGCGGCAGTAGCTGGTGGCTGTTTCCGT |
| Transcript | >Ophio5|610 ATGAAACTCGTCTCCCTCATTCTGGCCCTTGGCCTCGCCGCCTTCAGCCTCGCCGCTCCCATCCCTGCGCCCCGT CAACTCCTGGCAATGGATGACAGGCCCGTGCTGAGGAATCCCATGGACAGCCTGACGGCCTTGTTCGCGCCCTTG CGCATCCTCTGCTGGGGCCCGCGTCGCCTCAGGCCCGTCTTCGACATCGACAAGGAGAGCTCCGAGTACATGACG GACATGAATGGCGACTTGCTGCTCGTCGGCACAAATCAAAAGCTTCGAATTGTCGGCTGGAATCCGTCGCCGAGC CTCTTTATCTTGGTTCCCCGCGGCCGTCAGCCTGTTGCCATCCTCGTCGTCTGTCTCTGGCTGCTGGCGACGTGC TGGTACTTGGCGAGGTCCTTCCAAGACACCGACGATGCTGTCCTCGTCCTCCCGGCCCAGTCCCTGGAACAGCGG CGCCCCACCCCTCCTCCAGAGCGCGGCCGAGAAAAGAGTGCGGCAGTAGCTGGTGGCTGTTTCCGTTGA |
| Gene | >Ophio5|610 ATGAAACTCGTCTCCCTCATTCTGGCCCTTGGCCTCGCCGCCTTCAGCCTCGCCGCTCCCATCCCTGCGCCCCGT CAACTCCTGGCAATGGATGACAGGCCCGTGCTGAGGAATCCCATGGACAGCCTGACGGCCTTGTTCGCGCCCTTG CGCATCCTCTGCTGGGGCCCGCGTCGCCTCAGGCCCGTCTTCGACATCGACAAGGAGAGCTCCGAGTACATGACG GACATGAATGGCGACTTGCTGCTCGTCGGCACAAATCAAAAGCTTCGAATTGTCGGCTGGAATCCGTCGCCGAGC CTCTTTATCTTGGTTCCCCGCGGCCGTCAGCCTGTTGCCATCCTCGTCGTCTGTCTCTGGCTGCTGGCGACGTGC TGGTACTTGGCGAGGTTGGTCCTCGACGACGACAACGGCCCCTTGCCGCCCCTGTTTACTGATGCCACCTTTGCT GTCCAGGTCCTTCCAAGACACCGACGATGCTGTCCTCGTCCTCCCGGCCCAGTCCCTGGAACAGCGGCGCCCCAC CCCTCCTCCAGAGCGCGGCCGAGAAAAGAGTGCGGCAGTAGCTGGTGGCTGTTTCCGTTGA |