© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6069 |
| Gene name | |
| Location | scaffold_514:1889..2699 |
| Strand | + |
| Gene length (bp) | 810 |
| Transcript length (bp) | 810 |
| Coding sequence length (bp) | 807 |
| Protein length (aa) | 269 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01522 | Polysacc_deac_1 | Polysaccharide deacetylase | 4.7E-18 | 69 | 194 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04729|YFUM2_GEOSE | Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 | 71 | 260 | 4.0E-17 |
| sp|O34928|PDAA_BACSU | Peptidoglycan-N-acetylmuramic acid deacetylase PdaA OS=Bacillus subtilis (strain 168) GN=pdaA PE=1 SV=1 | 63 | 260 | 1.0E-16 |
| sp|P02963|NODB_RHIME | Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3 | 70 | 253 | 3.0E-16 |
| sp|P04676|NODB_RHILT | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. trifolii GN=nodB PE=3 SV=1 | 67 | 253 | 1.0E-15 |
| sp|P04675|NODB_BRASP | Chitooligosaccharide deacetylase OS=Bradyrhizobium sp. (strain ANU 289) GN=nodB PE=3 SV=2 | 57 | 253 | 4.0E-15 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04729|YFUM2_GEOSE | Uncharacterized 30.6 kDa protein in fumA 3'region OS=Geobacillus stearothermophilus PE=3 SV=1 | 71 | 260 | 4.0E-17 |
| sp|O34928|PDAA_BACSU | Peptidoglycan-N-acetylmuramic acid deacetylase PdaA OS=Bacillus subtilis (strain 168) GN=pdaA PE=1 SV=1 | 63 | 260 | 1.0E-16 |
| sp|P02963|NODB_RHIME | Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3 | 70 | 253 | 3.0E-16 |
| sp|P04676|NODB_RHILT | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. trifolii GN=nodB PE=3 SV=1 | 67 | 253 | 1.0E-15 |
| sp|P04675|NODB_BRASP | Chitooligosaccharide deacetylase OS=Bradyrhizobium sp. (strain ANU 289) GN=nodB PE=3 SV=2 | 57 | 253 | 4.0E-15 |
| sp|P04339|NODB_RHILV | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. viciae GN=nodB PE=3 SV=1 | 73 | 253 | 1.0E-14 |
| sp|Q8DP63|PGDA_STRR6 | Peptidoglycan-N-acetylglucosamine deacetylase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pgdA PE=1 SV=1 | 40 | 262 | 2.0E-13 |
| sp|P50850|YLXY_BACSU | Uncharacterized protein YlxY OS=Bacillus subtilis (strain 168) GN=ylxY PE=3 SV=2 | 90 | 260 | 4.0E-13 |
| sp|P50352|NODB_BRAEL | Chitooligosaccharide deacetylase OS=Bradyrhizobium elkanii GN=nodB PE=3 SV=1 | 54 | 253 | 2.0E-12 |
| sp|P83513|XY11A_PSEXY | Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 | 69 | 265 | 2.0E-11 |
| sp|P50355|NODB_RHISN | Chitooligosaccharide deacetylase OS=Rhizobium sp. (strain NGR234) GN=nodB PE=3 SV=2 | 77 | 253 | 3.0E-11 |
| sp|Q07740|NODB_AZOC5 | Chitooligosaccharide deacetylase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=nodB PE=3 SV=2 | 68 | 253 | 3.0E-10 |
| sp|O34798|PDAC_BACSU | Peptidoglycan-N-acetylmuramic acid deacetylase PdaC OS=Bacillus subtilis (strain 168) GN=pdaC PE=1 SV=1 | 71 | 259 | 6.0E-10 |
| sp|Q52845|NODB_RHILO | Chitooligosaccharide deacetylase OS=Rhizobium loti (strain MAFF303099) GN=nodB PE=3 SV=2 | 70 | 253 | 1.0E-09 |
| sp|P50354|NODB_RHIGA | Chitooligosaccharide deacetylase OS=Rhizobium galegae GN=nodB PE=3 SV=1 | 77 | 253 | 2.0E-08 |
| sp|Q06702|CDA1_YEAST | Chitin deacetylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA1 PE=1 SV=1 | 75 | 206 | 9.0E-07 |
| sp|P24150|NODB_RHILP | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. phaseoli GN=nodB PE=3 SV=1 | 77 | 266 | 1.0E-06 |
| sp|D4AM78|CDA_ARTBC | Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 | 70 | 260 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 25 | 47 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6069 MPRLALLLRLPNRLRRRVRRNRMATMAALTALTALLLLPLYSAYCVYKPPRFLVSYLRGRYPDVLFELTTTERVM ALSLDDAPSAHTADIMEVLRENGARATFFVIGDQVEGREEALRTLVGQGHELANHAMHDEPSRALSDDRLEADVA AVKEKLVAAYSAESSTLPNNYFRPGSGLISRRMRDLLGSRGFRIVLGSIYPHDPQIPYPAVNARHILSMAHPGAI IICHDRRKWTAPMLRLVLPELRRRGYKIVTITDLVKSVEPLGGR |
| Coding | >Ophio5|6069 ATGCCCCGACTGGCGCTGCTACTCCGACTACCGAACCGGCTGCGACGGCGAGTACGACGCAACCGGATGGCGACG ATGGCAGCGCTGACGGCGCTGACGGCGCTCCTCCTCCTACCGCTATACTCGGCCTACTGCGTATACAAGCCACCA CGATTCCTGGTGTCGTACCTACGCGGGCGGTACCCGGACGTGCTATTCGAATTGACGACGACGGAGCGCGTCATG GCTCTTTCGCTCGATGACGCTCCTTCGGCTCATACGGCCGACATCATGGAGGTTCTGCGGGAGAACGGGGCGAGG GCTACCTTTTTCGTCATCGGCGATCAGGTTGAGGGGAGGGAGGAGGCGTTGCGGACTCTCGTCGGTCAAGGTCAT GAGCTTGCCAATCACGCCATGCACGACGAACCTTCGCGCGCCTTGTCCGATGACCGGCTCGAGGCTGATGTCGCC GCCGTCAAGGAGAAGCTGGTGGCGGCCTATAGCGCAGAGTCATCGACTCTGCCCAACAATTATTTCCGTCCTGGC TCCGGTCTCATCAGTCGTCGGATGCGAGACCTTCTCGGCAGCAGGGGCTTTCGCATCGTTCTCGGCAGCATCTAT CCCCATGACCCGCAGATTCCTTACCCGGCCGTCAACGCGCGCCATATCCTCAGCATGGCTCATCCTGGAGCCATC ATCATTTGTCACGATCGTCGCAAGTGGACGGCCCCGATGCTGCGTCTCGTTCTGCCCGAGCTGCGCCGGAGAGGC TACAAGATTGTCACCATCACCGACCTTGTCAAGTCGGTCGAGCCCTTGGGCGGCCGA |
| Transcript | >Ophio5|6069 ATGCCCCGACTGGCGCTGCTACTCCGACTACCGAACCGGCTGCGACGGCGAGTACGACGCAACCGGATGGCGACG ATGGCAGCGCTGACGGCGCTGACGGCGCTCCTCCTCCTACCGCTATACTCGGCCTACTGCGTATACAAGCCACCA CGATTCCTGGTGTCGTACCTACGCGGGCGGTACCCGGACGTGCTATTCGAATTGACGACGACGGAGCGCGTCATG GCTCTTTCGCTCGATGACGCTCCTTCGGCTCATACGGCCGACATCATGGAGGTTCTGCGGGAGAACGGGGCGAGG GCTACCTTTTTCGTCATCGGCGATCAGGTTGAGGGGAGGGAGGAGGCGTTGCGGACTCTCGTCGGTCAAGGTCAT GAGCTTGCCAATCACGCCATGCACGACGAACCTTCGCGCGCCTTGTCCGATGACCGGCTCGAGGCTGATGTCGCC GCCGTCAAGGAGAAGCTGGTGGCGGCCTATAGCGCAGAGTCATCGACTCTGCCCAACAATTATTTCCGTCCTGGC TCCGGTCTCATCAGTCGTCGGATGCGAGACCTTCTCGGCAGCAGGGGCTTTCGCATCGTTCTCGGCAGCATCTAT CCCCATGACCCGCAGATTCCTTACCCGGCCGTCAACGCGCGCCATATCCTCAGCATGGCTCATCCTGGAGCCATC ATCATTTGTCACGATCGTCGCAAGTGGACGGCCCCGATGCTGCGTCTCGTTCTGCCCGAGCTGCGCCGGAGAGGC TACAAGATTGTCACCATCACCGACCTTGTCAAGTCGGTCGAGCCCTTGGGCGGCCGATAG |
| Gene | >Ophio5|6069 ATGCCCCGACTGGCGCTGCTACTCCGACTACCGAACCGGCTGCGACGGCGAGTACGACGCAACCGGATGGCGACG ATGGCAGCGCTGACGGCGCTGACGGCGCTCCTCCTCCTACCGCTATACTCGGCCTACTGCGTATACAAGCCACCA CGATTCCTGGTGTCGTACCTACGCGGGCGGTACCCGGACGTGCTATTCGAATTGACGACGACGGAGCGCGTCATG GCTCTTTCGCTCGATGACGCTCCTTCGGCTCATACGGCCGACATCATGGAGGTTCTGCGGGAGAACGGGGCGAGG GCTACCTTTTTCGTCATCGGCGATCAGGTTGAGGGGAGGGAGGAGGCGTTGCGGACTCTCGTCGGTCAAGGTCAT GAGCTTGCCAATCACGCCATGCACGACGAACCTTCGCGCGCCTTGTCCGATGACCGGCTCGAGGCTGATGTCGCC GCCGTCAAGGAGAAGCTGGTGGCGGCCTATAGCGCAGAGTCATCGACTCTGCCCAACAATTATTTCCGTCCTGGC TCCGGTCTCATCAGTCGTCGGATGCGAGACCTTCTCGGCAGCAGGGGCTTTCGCATCGTTCTCGGCAGCATCTAT CCCCATGACCCGCAGATTCCTTACCCGGCCGTCAACGCGCGCCATATCCTCAGCATGGCTCATCCTGGAGCCATC ATCATTTGTCACGATCGTCGCAAGTGGACGGCCCCGATGCTGCGTCTCGTTCTGCCCGAGCTGCGCCGGAGAGGC TACAAGATTGTCACCATCACCGACCTTGTCAAGTCGGTCGAGCCCTTGGGCGGCCGATAG |