Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|6035
Gene name
Location	scaffold_51:15473..16031
Strand	-
Gene length (bp)	558
Transcript length (bp)	414
Coding sequence length (bp)	411
Protein length (aa)	137

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 19	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	12.08	1.94	22.22
CcL	In ants, during behavior modification	2.74	0.00	5.68
CcD	In ants, recently dead	1.81	0.00	4.40

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.023042	yes
SC16a	CcD	0.013548	yes
CcL	CcD	0.590225	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|6035 MKFFHVFSAFALVAAVASSPDVDERAIIPGLSGHHDALYHDGHKKGDKKSVKKKGRKKAIRKGPKGCSAAASPRC CVPQHCQCNDGHVYRFNDANSKAGGSGCDPPMEFLAESTALLPEYCCFPPHLCVGPNGQMNC
Coding	>Ophio5\|6035 ATGAAGTTTTTCCACGTCTTTTCGGCTTTTGCTCTCGTGGCTGCGGTTGCGTCTTCGCCCGATGTTGACGAGCGT GCTATTATCCCAGGCCTGAGTGGTCACCACGACGCCTTGTATCACGACGGCCATAAGAAAGGCGACAAGAAAAGT GTCAAGAAAAAAGGCCGGAAGAAGGCCATCAGAAAGGGTCCCAAGGGCTGCTCAGCAGCGGCCTCTCCGCGTTGC TGCGTCCCGCAACATTGTCAATGCAATGATGGCCATGTATATCGGTTCAACGATGCAAACTCCAAGGCCGGCGGA AGCGGCTGCGATCCGCCCATGGAGTTTCTCGCTGAATCTACTGCCCTGTTGCCGGAATATTGTTGTTTTCCGCCT CATCTTTGTGTAGGCCCCAACGGCCAGATGAATTGT
Transcript	>Ophio5\|6035 ATGAAGTTTTTCCACGTCTTTTCGGCTTTTGCTCTCGTGGCTGCGGTTGCGTCTTCGCCCGATGTTGACGAGCGT GCTATTATCCCAGGCCTGAGTGGTCACCACGACGCCTTGTATCACGACGGCCATAAGAAAGGCGACAAGAAAAGT GTCAAGAAAAAAGGCCGGAAGAAGGCCATCAGAAAGGGTCCCAAGGGCTGCTCAGCAGCGGCCTCTCCGCGTTGC TGCGTCCCGCAACATTGTCAATGCAATGATGGCCATGTATATCGGTTCAACGATGCAAACTCCAAGGCCGGCGGA AGCGGCTGCGATCCGCCCATGGAGTTTCTCGCTGAATCTACTGCCCTGTTGCCGGAATATTGTTGTTTTCCGCCT CATCTTTGTGTAGGCCCCAACGGCCAGATGAATTGTTAG
Gene	>Ophio5\|6035 ATGAAGTTTTTCCACGTCTTTTCGGCTTTTGCTCTCGTGGCTGCGGTTGCGTCTTCGCCCGATGTTGACGAGCGT GCTATTATCCCAGGCCTGAGTGGTCACCACGACGCCTTGTATCACGACGGCCATAAGAAAGGCGACAAGAAAAGT GTCAAGAAAAAAGGCCGGAAGAAGGCCATCAGAAAGGGTCCCAAGGGCTGCTCAGCAGCGTGAGTCAATCTCATC ACTTCAAGGCTTTCTTTCTCATTTGTTCACTTGAGTCACCAGGGCCTCTCCGCGTTGCTGCGTCCCGCAACATTG TCAATGCAATGATGGTGAGCGGTTGCTGCTGTCAGACATTTCGAGAGCTCAATACGAGGAAGCTAACGAAACCCC TCCCCCCTCCCCCCCCTTGCCACAGGCCATGTATATCGGTTCAACGATGCAAACTCCAAGGCCGGCGGAAGCGGC TGCGATCCGCCCATGGAGTTTCTCGCTGAATCTACTGCCCTGTTGCCGGAATATTGTTGTTTTCCGCCTCATCTT TGTGTAGGCCCCAACGGCCAGATGAATTGTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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