© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6033 |
| Gene name | |
| Location | scaffold_51:14421..14820 |
| Strand | + |
| Gene length (bp) | 399 |
| Transcript length (bp) | 399 |
| Coding sequence length (bp) | 399 |
| Protein length (aa) | 133 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00293 | NUDIX | NUDIX domain | 2.7E-13 | 10 | 121 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9CA40|NUDT1_ARATH | Nudix hydrolase 1 OS=Arabidopsis thaliana GN=NUDT1 PE=1 SV=1 | 58 | 125 | 4.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 15.89 | 3.32 | 28.46 |
| CcL | In ants, during behavior modification | 5.41 | 0.00 | 11.37 |
| CcD | In ants, recently dead | 5.83 | 0.00 | 11.76 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.028880 | yes |
| SC16a | CcD | 0.033645 | yes |
| CcL | CcD | 0.911674 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6033 MSLPKSPLHGVCAIIVNADGRLLVSQRFGSHGSGEPMTLAQTNAPPHGMTDIFALVGSWQLPGGHLEEDEGVLSC AAREVREESNLQVQPLRVVETTYDLFKTAGKHYITWFVHCEMKDANAKPEVGQSIRP* |
| Coding | >Ophio5|6033 ATGTCACTGCCCAAGTCGCCTCTCCACGGCGTGTGCGCCATCATCGTCAACGCCGACGGCAGGCTTCTCGTGAGC CAGCGATTTGGCAGTCATGGATCCGGTGAGCCGATGACATTGGCGCAGACGAATGCCCCCCCCCATGGAATGACT GACATTTTTGCTTTGGTAGGCTCTTGGCAGCTCCCCGGCGGACATCTAGAAGAAGATGAAGGCGTGCTTTCCTGT GCGGCTCGCGAGGTGCGGGAAGAGTCAAACCTCCAAGTGCAGCCATTGCGAGTGGTGGAGACGACGTACGACTTG TTCAAGACGGCGGGAAAACATTACATTACCTGGTTTGTCCATTGCGAAATGAAAGATGCCAACGCCAAGCCCGAG GTCGGTCAATCCATTCGGCCATAG |
| Transcript | >Ophio5|6033 ATGTCACTGCCCAAGTCGCCTCTCCACGGCGTGTGCGCCATCATCGTCAACGCCGACGGCAGGCTTCTCGTGAGC CAGCGATTTGGCAGTCATGGATCCGGTGAGCCGATGACATTGGCGCAGACGAATGCCCCCCCCCATGGAATGACT GACATTTTTGCTTTGGTAGGCTCTTGGCAGCTCCCCGGCGGACATCTAGAAGAAGATGAAGGCGTGCTTTCCTGT GCGGCTCGCGAGGTGCGGGAAGAGTCAAACCTCCAAGTGCAGCCATTGCGAGTGGTGGAGACGACGTACGACTTG TTCAAGACGGCGGGAAAACATTACATTACCTGGTTTGTCCATTGCGAAATGAAAGATGCCAACGCCAAGCCCGAG GTCGGTCAATCCATTCGGCCATAG |
| Gene | >Ophio5|6033 ATGTCACTGCCCAAGTCGCCTCTCCACGGCGTGTGCGCCATCATCGTCAACGCCGACGGCAGGCTTCTCGTGAGC CAGCGATTTGGCAGTCATGGATCCGGTGAGCCGATGACATTGGCGCAGACGAATGCCCCCCCCCATGGAATGACT GACATTTTTGCTTTGGTAGGCTCTTGGCAGCTCCCCGGCGGACATCTAGAAGAAGATGAAGGCGTGCTTTCCTGT GCGGCTCGCGAGGTGCGGGAAGAGTCAAACCTCCAAGTGCAGCCATTGCGAGTGGTGGAGACGACGTACGACTTG TTCAAGACGGCGGGAAAACATTACATTACCTGGTTTGTCCATTGCGAAATGAAAGATGCCAACGCCAAGCCCGAG GTCGGTCAATCCATTCGGCCATAG |