Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6033
Gene name
Locationscaffold_51:14421..14820
Strand+
Gene length (bp)399
Transcript length (bp)399
Coding sequence length (bp)399
Protein length (aa) 133

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00293 NUDIX NUDIX domain 2.7E-13 10 121

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9CA40|NUDT1_ARATH Nudix hydrolase 1 OS=Arabidopsis thaliana GN=NUDT1 PE=1 SV=1 58 125 4.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6033
MSLPKSPLHGVCAIIVNADGRLLVSQRFGSHGSGEPMTLAQTNAPPHGMTDIFALVGSWQLPGGHLEEDEGVLSC
AAREVREESNLQVQPLRVVETTYDLFKTAGKHYITWFVHCEMKDANAKPEVGQSIRP*
Coding >Ophio5|6033
ATGTCACTGCCCAAGTCGCCTCTCCACGGCGTGTGCGCCATCATCGTCAACGCCGACGGCAGGCTTCTCGTGAGC
CAGCGATTTGGCAGTCATGGATCCGGTGAGCCGATGACATTGGCGCAGACGAATGCCCCCCCCCATGGAATGACT
GACATTTTTGCTTTGGTAGGCTCTTGGCAGCTCCCCGGCGGACATCTAGAAGAAGATGAAGGCGTGCTTTCCTGT
GCGGCTCGCGAGGTGCGGGAAGAGTCAAACCTCCAAGTGCAGCCATTGCGAGTGGTGGAGACGACGTACGACTTG
TTCAAGACGGCGGGAAAACATTACATTACCTGGTTTGTCCATTGCGAAATGAAAGATGCCAACGCCAAGCCCGAG
GTCGGTCAATCCATTCGGCCATAG
Transcript >Ophio5|6033
ATGTCACTGCCCAAGTCGCCTCTCCACGGCGTGTGCGCCATCATCGTCAACGCCGACGGCAGGCTTCTCGTGAGC
CAGCGATTTGGCAGTCATGGATCCGGTGAGCCGATGACATTGGCGCAGACGAATGCCCCCCCCCATGGAATGACT
GACATTTTTGCTTTGGTAGGCTCTTGGCAGCTCCCCGGCGGACATCTAGAAGAAGATGAAGGCGTGCTTTCCTGT
GCGGCTCGCGAGGTGCGGGAAGAGTCAAACCTCCAAGTGCAGCCATTGCGAGTGGTGGAGACGACGTACGACTTG
TTCAAGACGGCGGGAAAACATTACATTACCTGGTTTGTCCATTGCGAAATGAAAGATGCCAACGCCAAGCCCGAG
GTCGGTCAATCCATTCGGCCATAG
Gene >Ophio5|6033
ATGTCACTGCCCAAGTCGCCTCTCCACGGCGTGTGCGCCATCATCGTCAACGCCGACGGCAGGCTTCTCGTGAGC
CAGCGATTTGGCAGTCATGGATCCGGTGAGCCGATGACATTGGCGCAGACGAATGCCCCCCCCCATGGAATGACT
GACATTTTTGCTTTGGTAGGCTCTTGGCAGCTCCCCGGCGGACATCTAGAAGAAGATGAAGGCGTGCTTTCCTGT
GCGGCTCGCGAGGTGCGGGAAGAGTCAAACCTCCAAGTGCAGCCATTGCGAGTGGTGGAGACGACGTACGACTTG
TTCAAGACGGCGGGAAAACATTACATTACCTGGTTTGTCCATTGCGAAATGAAAGATGCCAACGCCAAGCCCGAG
GTCGGTCAATCCATTCGGCCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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