© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|6024 |
| Gene name | |
| Location | scaffold_51:143..1568 |
| Strand | + |
| Gene length (bp) | 1425 |
| Transcript length (bp) | 1425 |
| Coding sequence length (bp) | 1422 |
| Protein length (aa) | 474 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01179 | Cu_amine_oxid | Copper amine oxidase, enzyme domain | 1.3E-146 | 57 | 463 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12556|AMO1_ASPNG | Copper amine oxidase 1 OS=Aspergillus niger GN=AO-I PE=1 SV=2 | 28 | 465 | 4.0E-127 |
| sp|Q07123|AMO2_ARTS1 | Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1 | 36 | 473 | 1.0E-94 |
| sp|Q07121|AMO1_ARTS1 | Primary amine oxidase OS=Arthrobacter sp. (strain P1) GN=maoI PE=1 SV=1 | 36 | 473 | 1.0E-94 |
| sp|Q9P7F2|CAO1_SCHPO | Copper amine oxidase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cao1 PE=1 SV=1 | 16 | 465 | 8.0E-94 |
| sp|P12807|AMO_PICAN | Peroxisomal primary amine oxidase OS=Pichia angusta GN=AMO PE=1 SV=1 | 16 | 465 | 7.0E-90 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12556|AMO1_ASPNG | Copper amine oxidase 1 OS=Aspergillus niger GN=AO-I PE=1 SV=2 | 28 | 465 | 4.0E-127 |
| sp|Q07123|AMO2_ARTS1 | Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1 | 36 | 473 | 1.0E-94 |
| sp|Q07121|AMO1_ARTS1 | Primary amine oxidase OS=Arthrobacter sp. (strain P1) GN=maoI PE=1 SV=1 | 36 | 473 | 1.0E-94 |
| sp|Q9P7F2|CAO1_SCHPO | Copper amine oxidase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cao1 PE=1 SV=1 | 16 | 465 | 8.0E-94 |
| sp|P12807|AMO_PICAN | Peroxisomal primary amine oxidase OS=Pichia angusta GN=AMO PE=1 SV=1 | 16 | 465 | 7.0E-90 |
| sp|Q59118|AMOH_ARTGO | Histamine oxidase OS=Arthrobacter globiformis PE=1 SV=3 | 44 | 465 | 2.0E-88 |
| sp|P46881|PAOX_ARTGO | Phenylethylamine oxidase OS=Arthrobacter globiformis PE=1 SV=1 | 50 | 465 | 3.0E-86 |
| sp|O42890|CAO2_SCHPO | Copper amine oxidase-like protein cao2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cao2 PE=3 SV=1 | 54 | 466 | 2.0E-80 |
| sp|Q43077|AMO_PEA | Primary amine oxidase OS=Pisum sativum PE=1 SV=1 | 23 | 463 | 2.0E-56 |
| sp|P49252|AMO_LENCU | Primary amine oxidase (Fragment) OS=Lens culinaris PE=1 SV=3 | 23 | 463 | 2.0E-55 |
| sp|Q8H1H9|AMO_ARATH | Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1 | 33 | 468 | 1.0E-48 |
| sp|P46883|AMO_ECOLI | Primary amine oxidase OS=Escherichia coli (strain K12) GN=tynA PE=1 SV=1 | 25 | 463 | 9.0E-46 |
| sp|P80695|AMO_KLEOK | Primary amine oxidase OS=Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) GN=maoA PE=1 SV=2 | 25 | 463 | 8.0E-45 |
| sp|P49250|AMO_ENTAE | Primary amine oxidase OS=Enterobacter aerogenes GN=maoA PE=1 SV=1 | 23 | 463 | 4.0E-44 |
| sp|H2A0M3|AMO_PINMG | Putative amine oxidase [copper-containing] OS=Pinctada margaritifera PE=1 SV=1 | 49 | 463 | 2.0E-30 |
| sp|Q29437|AOCX_BOVIN | Primary amine oxidase, liver isozyme OS=Bos taurus PE=1 SV=1 | 49 | 466 | 9.0E-28 |
| sp|Q9TTK6|AOC3_BOVIN | Membrane primary amine oxidase OS=Bos taurus GN=AOC3 PE=2 SV=3 | 49 | 466 | 1.0E-26 |
| sp|P36633|AOC1_RAT | Amiloride-sensitive amine oxidase [copper-containing] OS=Rattus norvegicus GN=Aoc1 PE=2 SV=1 | 58 | 463 | 3.0E-25 |
| sp|Q9TRC7|AOC1_PIG | Amiloride-sensitive amine oxidase [copper-containing] OS=Sus scrofa GN=AOC1 PE=1 SV=3 | 58 | 463 | 4.0E-25 |
| sp|O46406|AOCY_BOVIN | Primary amine oxidase, lung isozyme OS=Bos taurus PE=2 SV=1 | 49 | 466 | 6.0E-25 |
| sp|P19801|AOC1_HUMAN | Amiloride-sensitive amine oxidase [copper-containing] OS=Homo sapiens GN=AOC1 PE=1 SV=4 | 47 | 463 | 5.0E-24 |
| sp|Q8JZQ5|AOC1_MOUSE | Amiloride-sensitive amine oxidase [copper-containing] OS=Mus musculus GN=Aoc1 PE=2 SV=1 | 58 | 463 | 3.0E-23 |
| sp|O75106|AOC2_HUMAN | Retina-specific copper amine oxidase OS=Homo sapiens GN=AOC2 PE=1 SV=2 | 61 | 463 | 5.0E-22 |
| sp|Q5R9I0|AOC3_PONAB | Membrane primary amine oxidase OS=Pongo abelii GN=AOC3 PE=2 SV=3 | 61 | 463 | 1.0E-21 |
| sp|Q16853|AOC3_HUMAN | Membrane primary amine oxidase OS=Homo sapiens GN=AOC3 PE=1 SV=3 | 61 | 463 | 2.0E-21 |
| sp|O08590|AOC3_RAT | Membrane primary amine oxidase OS=Rattus norvegicus GN=Aoc3 PE=1 SV=4 | 55 | 463 | 2.0E-20 |
| sp|O70423|AOC3_MOUSE | Membrane primary amine oxidase OS=Mus musculus GN=Aoc3 PE=1 SV=3 | 43 | 466 | 4.0E-17 |
| sp|Q812C9|AOC2_MOUSE | Retina-specific copper amine oxidase OS=Mus musculus GN=Aoc2 PE=2 SV=2 | 62 | 463 | 8.0E-16 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005507 | copper ion binding | Yes |
| GO:0048038 | quinone binding | Yes |
| GO:0009308 | amine metabolic process | Yes |
| GO:0008131 | primary amine oxidase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0008150 | biological_process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0046872 | metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | No |
| GO:0008152 | metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005488 | binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 9.89 | 3.73 | 16.05 |
| CcL | In ants, during behavior modification | 1.52 | 0.06 | 2.98 |
| CcD | In ants, recently dead | 1.41 | 0.10 | 2.72 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.906611 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|6024 MSESLHISAVYHLPTTEHERLRVEARPFDRRKIHASAHSEYHASLRPAPRQTTRPYRVHQPQGSSLDLQGGLLSW EKWRLRVGFNYREGMTLHDVRYDGRSLFYRLSLSELFVPYGDPRPVFQRKGALDLGNDGAGVNANCLRPGCDCLG LVSYMDGWLTTSHGEPLKLANVICCHEQDDGILWKHTSFRTGNAVVARSRLLILQTVITVSNYEYIFAFILGQDA SIRYEVRATGILSTTPAAIGHQVPYGLVVAPGVLAPSHQHLFCLRIDPALDGHQNSLLMEESVAMASDRDKNPHG VGFAPSTRFVEHEGGFDLDLASNRVFKLVNEKVRNPTTGTAVGFRLDPCYSQMLLARPDSWHARRAEFGRHAVWI TRYFDRELFPAGNHTMQSLGGDGIASAIERRRRADDPDASRVRDRDIVLWHTFGCTHNPRLEDWPVMPCETMAVG LKPVNFFDGNPALDVAVFSTCSKL |
| Coding | >Ophio5|6024 ATGTCGGAATCGCTACACATCTCGGCCGTCTATCACCTCCCTACGACGGAGCATGAGCGTCTTCGGGTCGAAGCC AGACCGTTTGATCGACGCAAGATTCACGCCTCCGCCCACAGCGAGTATCACGCCAGTCTACGGCCGGCCCCGCGA CAGACGACGCGTCCGTATCGCGTTCACCAGCCCCAAGGCTCTTCCCTCGACCTTCAAGGAGGCCTTTTGTCGTGG GAAAAGTGGCGGCTACGTGTCGGCTTCAACTACCGAGAGGGCATGACCCTTCACGACGTGCGGTACGACGGCCGC AGCTTGTTCTACCGTCTCTCGCTGTCGGAGCTGTTCGTGCCGTACGGCGATCCGCGTCCCGTCTTTCAGCGGAAA GGGGCTTTGGACCTGGGTAATGATGGCGCCGGCGTCAATGCCAACTGTCTACGTCCCGGTTGCGATTGTCTCGGC CTCGTGTCGTACATGGACGGCTGGCTCACCACCAGCCACGGTGAGCCCCTGAAGCTGGCCAATGTCATCTGCTGC CATGAGCAGGACGACGGCATCCTTTGGAAGCATACGAGCTTTCGGACGGGAAACGCCGTCGTGGCCCGCTCCCGC CTCCTGATCCTGCAGACCGTCATCACCGTCAGCAATTACGAGTACATCTTTGCCTTTATCCTCGGCCAAGACGCC TCCATCCGGTACGAGGTCCGGGCCACGGGCATTCTGTCGACGACGCCCGCCGCCATCGGCCACCAGGTTCCCTAC GGCCTCGTCGTCGCCCCGGGCGTCTTAGCACCCTCTCATCAACACCTGTTCTGCCTCCGTATCGACCCTGCTCTC GACGGACACCAAAATTCGCTCCTGATGGAGGAGAGTGTGGCGATGGCATCGGATCGAGACAAGAATCCTCACGGC GTAGGCTTCGCCCCCTCGACCCGCTTCGTCGAGCACGAGGGGGGCTTCGATCTCGACCTGGCCTCCAACCGCGTC TTCAAGCTCGTCAACGAGAAAGTCCGAAACCCGACGACGGGAACGGCCGTCGGTTTCCGGCTCGATCCCTGCTAT AGCCAGATGCTCCTCGCCCGACCGGATTCCTGGCACGCCCGACGGGCAGAGTTCGGCCGTCACGCCGTCTGGATC ACTCGCTACTTCGACCGTGAGCTTTTTCCCGCCGGCAATCACACCATGCAGTCCCTTGGCGGCGACGGCATCGCC TCGGCTATCGAGCGACGACGAAGAGCCGACGACCCGGACGCGTCGCGGGTGAGGGATAGGGATATCGTATTATGG CATACCTTTGGCTGTACCCATAACCCGCGTCTCGAGGACTGGCCCGTCATGCCTTGTGAGACCATGGCCGTTGGT CTGAAGCCCGTCAACTTCTTTGACGGCAACCCGGCCCTTGATGTTGCCGTTTTTTCCACCTGTTCCAAGTTG |
| Transcript | >Ophio5|6024 ATGTCGGAATCGCTACACATCTCGGCCGTCTATCACCTCCCTACGACGGAGCATGAGCGTCTTCGGGTCGAAGCC AGACCGTTTGATCGACGCAAGATTCACGCCTCCGCCCACAGCGAGTATCACGCCAGTCTACGGCCGGCCCCGCGA CAGACGACGCGTCCGTATCGCGTTCACCAGCCCCAAGGCTCTTCCCTCGACCTTCAAGGAGGCCTTTTGTCGTGG GAAAAGTGGCGGCTACGTGTCGGCTTCAACTACCGAGAGGGCATGACCCTTCACGACGTGCGGTACGACGGCCGC AGCTTGTTCTACCGTCTCTCGCTGTCGGAGCTGTTCGTGCCGTACGGCGATCCGCGTCCCGTCTTTCAGCGGAAA GGGGCTTTGGACCTGGGTAATGATGGCGCCGGCGTCAATGCCAACTGTCTACGTCCCGGTTGCGATTGTCTCGGC CTCGTGTCGTACATGGACGGCTGGCTCACCACCAGCCACGGTGAGCCCCTGAAGCTGGCCAATGTCATCTGCTGC CATGAGCAGGACGACGGCATCCTTTGGAAGCATACGAGCTTTCGGACGGGAAACGCCGTCGTGGCCCGCTCCCGC CTCCTGATCCTGCAGACCGTCATCACCGTCAGCAATTACGAGTACATCTTTGCCTTTATCCTCGGCCAAGACGCC TCCATCCGGTACGAGGTCCGGGCCACGGGCATTCTGTCGACGACGCCCGCCGCCATCGGCCACCAGGTTCCCTAC GGCCTCGTCGTCGCCCCGGGCGTCTTAGCACCCTCTCATCAACACCTGTTCTGCCTCCGTATCGACCCTGCTCTC GACGGACACCAAAATTCGCTCCTGATGGAGGAGAGTGTGGCGATGGCATCGGATCGAGACAAGAATCCTCACGGC GTAGGCTTCGCCCCCTCGACCCGCTTCGTCGAGCACGAGGGGGGCTTCGATCTCGACCTGGCCTCCAACCGCGTC TTCAAGCTCGTCAACGAGAAAGTCCGAAACCCGACGACGGGAACGGCCGTCGGTTTCCGGCTCGATCCCTGCTAT AGCCAGATGCTCCTCGCCCGACCGGATTCCTGGCACGCCCGACGGGCAGAGTTCGGCCGTCACGCCGTCTGGATC ACTCGCTACTTCGACCGTGAGCTTTTTCCCGCCGGCAATCACACCATGCAGTCCCTTGGCGGCGACGGCATCGCC TCGGCTATCGAGCGACGACGAAGAGCCGACGACCCGGACGCGTCGCGGGTGAGGGATAGGGATATCGTATTATGG CATACCTTTGGCTGTACCCATAACCCGCGTCTCGAGGACTGGCCCGTCATGCCTTGTGAGACCATGGCCGTTGGT CTGAAGCCCGTCAACTTCTTTGACGGCAACCCGGCCCTTGATGTTGCCGTTTTTTCCACCTGTTCCAAGTTGTAG |
| Gene | >Ophio5|6024 ATGTCGGAATCGCTACACATCTCGGCCGTCTATCACCTCCCTACGACGGAGCATGAGCGTCTTCGGGTCGAAGCC AGACCGTTTGATCGACGCAAGATTCACGCCTCCGCCCACAGCGAGTATCACGCCAGTCTACGGCCGGCCCCGCGA CAGACGACGCGTCCGTATCGCGTTCACCAGCCCCAAGGCTCTTCCCTCGACCTTCAAGGAGGCCTTTTGTCGTGG GAAAAGTGGCGGCTACGTGTCGGCTTCAACTACCGAGAGGGCATGACCCTTCACGACGTGCGGTACGACGGCCGC AGCTTGTTCTACCGTCTCTCGCTGTCGGAGCTGTTCGTGCCGTACGGCGATCCGCGTCCCGTCTTTCAGCGGAAA GGGGCTTTGGACCTGGGTAATGATGGCGCCGGCGTCAATGCCAACTGTCTACGTCCCGGTTGCGATTGTCTCGGC CTCGTGTCGTACATGGACGGCTGGCTCACCACCAGCCACGGTGAGCCCCTGAAGCTGGCCAATGTCATCTGCTGC CATGAGCAGGACGACGGCATCCTTTGGAAGCATACGAGCTTTCGGACGGGAAACGCCGTCGTGGCCCGCTCCCGC CTCCTGATCCTGCAGACCGTCATCACCGTCAGCAATTACGAGTACATCTTTGCCTTTATCCTCGGCCAAGACGCC TCCATCCGGTACGAGGTCCGGGCCACGGGCATTCTGTCGACGACGCCCGCCGCCATCGGCCACCAGGTTCCCTAC GGCCTCGTCGTCGCCCCGGGCGTCTTAGCACCCTCTCATCAACACCTGTTCTGCCTCCGTATCGACCCTGCTCTC GACGGACACCAAAATTCGCTCCTGATGGAGGAGAGTGTGGCGATGGCATCGGATCGAGACAAGAATCCTCACGGC GTAGGCTTCGCCCCCTCGACCCGCTTCGTCGAGCACGAGGGGGGCTTCGATCTCGACCTGGCCTCCAACCGCGTC TTCAAGCTCGTCAACGAGAAAGTCCGAAACCCGACGACGGGAACGGCCGTCGGTTTCCGGCTCGATCCCTGCTAT AGCCAGATGCTCCTCGCCCGACCGGATTCCTGGCACGCCCGACGGGCAGAGTTCGGCCGTCACGCCGTCTGGATC ACTCGCTACTTCGACCGTGAGCTTTTTCCCGCCGGCAATCACACCATGCAGTCCCTTGGCGGCGACGGCATCGCC TCGGCTATCGAGCGACGACGAAGAGCCGACGACCCGGACGCGTCGCGGGTGAGGGATAGGGATATCGTATTATGG CATACCTTTGGCTGTACCCATAACCCGCGTCTCGAGGACTGGCCCGTCATGCCTTGTGAGACCATGGCCGTTGGT CTGAAGCCCGTCAACTTCTTTGACGGCAACCCGGCCCTTGATGTTGCCGTTTTTTCCACCTGTTCCAAGTTGTAG |