Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|6019
Gene name
Locationscaffold_509:5568..6235
Strand+
Gene length (bp)667
Transcript length (bp)552
Coding sequence length (bp)549
Protein length (aa) 183

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00787 PX PX domain 3.4E-17 106 181

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q6BIS2|YPT35_DEBHA PX domain-containing protein YPT35 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YPT35 PE=3 SV=2 34 183 4.0E-14
sp|Q5AG56|YPT35_CANAL PX domain-containing protein YPT35 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YPT35 PE=3 SV=1 48 183 1.0E-13
sp|A5DHC9|YPT35_PICGU PX domain-containing protein YPT35 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=YPT35 PE=3 SV=2 85 182 4.0E-11
sp|Q9USN1|SNX12_SCHPO Sorting nexin-12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snx12 PE=3 SV=1 88 181 2.0E-09
sp|P57769|SNX16_RAT Sorting nexin-16 OS=Rattus norvegicus GN=Snx16 PE=1 SV=2 7 181 1.0E-08
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q6BIS2|YPT35_DEBHA PX domain-containing protein YPT35 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YPT35 PE=3 SV=2 34 183 4.0E-14
sp|Q5AG56|YPT35_CANAL PX domain-containing protein YPT35 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YPT35 PE=3 SV=1 48 183 1.0E-13
sp|A5DHC9|YPT35_PICGU PX domain-containing protein YPT35 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=YPT35 PE=3 SV=2 85 182 4.0E-11
sp|Q9USN1|SNX12_SCHPO Sorting nexin-12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snx12 PE=3 SV=1 88 181 2.0E-09
sp|P57769|SNX16_RAT Sorting nexin-16 OS=Rattus norvegicus GN=Snx16 PE=1 SV=2 7 181 1.0E-08
sp|Q9FG38|SNX1_ARATH Sorting nexin 1 OS=Arabidopsis thaliana GN=SNX1 PE=1 SV=1 83 181 7.0E-08
sp|Q8C080|SNX16_MOUSE Sorting nexin-16 OS=Mus musculus GN=Snx16 PE=1 SV=2 16 181 2.0E-07
sp|Q3MPQ4|MVP1_CANAL Sorting nexin MVP1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MVP1 PE=3 SV=1 97 181 2.0E-07
sp|Q6C9X0|SNX41_YARLI Sorting nexin-41 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SNX41 PE=3 SV=1 28 181 1.0E-06
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GO

GO Term Description Terminal node
GO:0035091 phosphatidylinositol binding Yes
GO:0005488 binding No
GO:0005543 phospholipid binding No
GO:0003674 molecular_function No
GO:0008289 lipid binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 43 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|6019
MASAVERHSGPIPHGDDANDVCETQQPYWPIVAGAFRRNTSSLSVDSLPPAITLRDNDTIEHSDRNAACWARGVD
VVNYTVVNGSATNIGAFVVWIVRVQTLNGGHINIRKRYSEFEGLRAQLIQSFPGFEAAVPVLPPKSFISRFRPAF
LDKRRAGLQYFLHCIILNPEFSASPVLRDFLFS
Coding >Ophio5|6019
ATGGCATCTGCGGTAGAAAGGCATTCTGGCCCGATCCCCCACGGCGACGATGCAAACGACGTCTGCGAGACGCAA
CAGCCCTATTGGCCCATCGTCGCGGGCGCGTTTCGGCGCAATACCTCCAGCCTCTCCGTCGACTCGCTGCCGCCC
GCCATTACGCTGCGCGACAATGACACGATCGAGCACAGCGATCGCAACGCCGCCTGCTGGGCCCGCGGCGTCGAT
GTTGTTAATTATACTGTCGTCAACGGCAGCGCCACTAACATCGGCGCCTTCGTCGTCTGGATCGTCCGCGTCCAA
ACACTCAACGGCGGCCACATCAACATCCGCAAGCGCTACTCCGAGTTCGAGGGTCTACGCGCCCAGCTGATTCAG
TCCTTTCCCGGCTTCGAGGCCGCCGTCCCCGTCCTGCCGCCCAAGAGCTTCATCTCCAGGTTCCGCCCCGCCTTT
CTCGACAAGAGACGCGCCGGCCTGCAGTACTTTCTCCACTGCATCATCCTTAACCCCGAGTTCTCCGCATCGCCC
GTCCTCCGAGACTTTCTTTTCTCC
Transcript >Ophio5|6019
ATGGCATCTGCGGTAGAAAGGCATTCTGGCCCGATCCCCCACGGCGACGATGCAAACGACGTCTGCGAGACGCAA
CAGCCCTATTGGCCCATCGTCGCGGGCGCGTTTCGGCGCAATACCTCCAGCCTCTCCGTCGACTCGCTGCCGCCC
GCCATTACGCTGCGCGACAATGACACGATCGAGCACAGCGATCGCAACGCCGCCTGCTGGGCCCGCGGCGTCGAT
GTTGTTAATTATACTGTCGTCAACGGCAGCGCCACTAACATCGGCGCCTTCGTCGTCTGGATCGTCCGCGTCCAA
ACACTCAACGGCGGCCACATCAACATCCGCAAGCGCTACTCCGAGTTCGAGGGTCTACGCGCCCAGCTGATTCAG
TCCTTTCCCGGCTTCGAGGCCGCCGTCCCCGTCCTGCCGCCCAAGAGCTTCATCTCCAGGTTCCGCCCCGCCTTT
CTCGACAAGAGACGCGCCGGCCTGCAGTACTTTCTCCACTGCATCATCCTTAACCCCGAGTTCTCCGCATCGCCC
GTCCTCCGAGACTTTCTTTTCTCCTGA
Gene >Ophio5|6019
ATGGCATCTGCGGTAGAAAGGCATTCTGGCCCGATCCCCCACGGCGACGATGCAAACGACGTCTGCGAGACGCAA
CAGCCCTATTGGCCCATCGTCGCGGGCGCGTTTCGGCGCAATACCTCCAGCCTCTCCGTCGACTCGCTGCCGCCC
GCCATTACGCTGCGCGACAATGACACGATCGAGCACAGCGATCGCAACGCCGCCTGCTGGGCCCGCGGCGTCGAT
GTTGTTAATTATACTGTCGTCAACGGCAGCGCCACTAACATCGGCGCCTTCGTCGTCTGGATCGTCCGCGTCCAA
ACACTCAACGTGGGCCGCTCGCTCTGCTGCTCGACCCCTCCAACTTGGCTGATGAATGATGGACGGTCCAGGGCG
GCCACATCAACATCCGCAAGCGCTACTCCGAGTTCGAGGGTCTACGCGCCCAGCTGATTCAGTCCTTTCCCGGCT
TCGAGGCCGCCGTCCCCGTCCTGCCGCCCAAGAGCTTCATCTCCAGGTTCCGCCCCGCCTTTCTCGACAAGAGAC
GCGCCGGCCTGCAGTACTTTCTCCAGTGCGCCGCCGCGCCCCGTCGAACATGCCGTCGAGCGCTGCTGACCCGCG
CAGCTGCATCATCCTTAACCCCGAGTTCTCCGCATCGCCCGTCCTCCGAGACTTTCTTTTCTCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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