Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5997
Gene name
Locationscaffold_504:8081..9241
Strand+
Gene length (bp)1160
Transcript length (bp)1089
Coding sequence length (bp)1086
Protein length (aa) 362

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.41 0.0 1.0
CcL In ants, during behavior modification 0.00 0.0 0.0
CcD In ants, recently dead 0.00 0.0 0.0

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5997
MKFLPVGTAFLATTLAAPTGEKHDYKDVDYKNSYDGDYKNGQYGGDYKNSYGGDYKHGQYGGDYKNGGDWKHRGD
KHGDLGRNYGEYDGYKHGKYDDGWKNGGIGVHVGGLDGFKHGGDYKHGGDYKHGDGFKKGGYNYGEYDGGKKNGG
WKGDDYNRGGDWNKGGDYKNGGGDWNKGGDYKHGGDYKHGGDWNKGGDGFKGGKNYGEYDGGKKGDWKDDDYKHG
GDWNKGGDYKNGGDWNKGGDGFKGGKNYGEYDSGKKGDGKDDGHKSGLGLGGLGGLDGLGKSLDLGWLTGSKHQG
GKGFDGGKYDNGKYDNGKFGGGKDYSEWDGNKGYDKDFGKDSGKGSDKGYDIGFGKDYNKGF
Coding >Ophio5|5997
ATGAAGTTTCTCCCCGTTGGAACCGCCTTCCTGGCGACGACGCTGGCCGCGCCCACTGGTGAAAAGCACGACTAC
AAGGACGTAGACTACAAGAACAGCTACGACGGCGACTACAAGAACGGCCAATACGGGGGTGACTACAAGAACAGC
TATGGCGGAGACTACAAGCACGGCCAATACGGGGGTGATTACAAAAATGGCGGCGACTGGAAGCATCGCGGCGAC
AAGCACGGCGACCTAGGCCGCAACTACGGAGAGTACGACGGCTACAAGCACGGCAAGTACGACGATGGCTGGAAG
AACGGCGGCATCGGCGTTCATGTTGGCGGGCTTGACGGCTTCAAGCACGGCGGTGACTACAAGCATGGCGGTGAC
TACAAGCATGGCGATGGCTTCAAGAAGGGAGGATACAACTACGGAGAATACGATGGCGGCAAGAAGAACGGCGGC
TGGAAGGGCGATGACTACAACCGCGGCGGTGACTGGAACAAGGGAGGTGACTACAAGAACGGCGGAGGTGATTGG
AACAAGGGTGGCGACTACAAGCACGGCGGTGATTACAAGCATGGCGGCGATTGGAACAAAGGTGGCGATGGTTTC
AAGGGCGGCAAAAACTACGGAGAGTATGACGGTGGCAAGAAGGGCGACTGGAAGGACGATGACTACAAGCACGGT
GGTGACTGGAACAAGGGTGGCGACTACAAGAACGGCGGCGACTGGAACAAAGGTGGCGATGGCTTCAAGGGCGGC
AAAAACTACGGAGAGTACGACAGTGGCAAGAAGGGCGACGGGAAGGATGATGGCCACAAGAGCGGCCTTGGGCTC
GGCGGTCTCGGCGGCCTTGATGGCCTCGGCAAGAGCCTCGACCTGGGTTGGTTGACCGGTAGCAAGCACCAGGGC
GGCAAGGGGTTCGACGGTGGCAAGTACGACAACGGGAAGTACGACAATGGCAAGTTTGGTGGCGGCAAGGACTAC
TCTGAGTGGGACGGCAACAAGGGCTATGACAAGGACTTTGGCAAGGATTCTGGCAAGGGCTCTGACAAGGGCTAC
GACATTGGCTTTGGCAAGGACTACAACAAGGGGTTC
Transcript >Ophio5|5997
ATGAAGTTTCTCCCCGTTGGAACCGCCTTCCTGGCGACGACGCTGGCCGCGCCCACTGGTGAAAAGCACGACTAC
AAGGACGTAGACTACAAGAACAGCTACGACGGCGACTACAAGAACGGCCAATACGGGGGTGACTACAAGAACAGC
TATGGCGGAGACTACAAGCACGGCCAATACGGGGGTGATTACAAAAATGGCGGCGACTGGAAGCATCGCGGCGAC
AAGCACGGCGACCTAGGCCGCAACTACGGAGAGTACGACGGCTACAAGCACGGCAAGTACGACGATGGCTGGAAG
AACGGCGGCATCGGCGTTCATGTTGGCGGGCTTGACGGCTTCAAGCACGGCGGTGACTACAAGCATGGCGGTGAC
TACAAGCATGGCGATGGCTTCAAGAAGGGAGGATACAACTACGGAGAATACGATGGCGGCAAGAAGAACGGCGGC
TGGAAGGGCGATGACTACAACCGCGGCGGTGACTGGAACAAGGGAGGTGACTACAAGAACGGCGGAGGTGATTGG
AACAAGGGTGGCGACTACAAGCACGGCGGTGATTACAAGCATGGCGGCGATTGGAACAAAGGTGGCGATGGTTTC
AAGGGCGGCAAAAACTACGGAGAGTATGACGGTGGCAAGAAGGGCGACTGGAAGGACGATGACTACAAGCACGGT
GGTGACTGGAACAAGGGTGGCGACTACAAGAACGGCGGCGACTGGAACAAAGGTGGCGATGGCTTCAAGGGCGGC
AAAAACTACGGAGAGTACGACAGTGGCAAGAAGGGCGACGGGAAGGATGATGGCCACAAGAGCGGCCTTGGGCTC
GGCGGTCTCGGCGGCCTTGATGGCCTCGGCAAGAGCCTCGACCTGGGTTGGTTGACCGGTAGCAAGCACCAGGGC
GGCAAGGGGTTCGACGGTGGCAAGTACGACAACGGGAAGTACGACAATGGCAAGTTTGGTGGCGGCAAGGACTAC
TCTGAGTGGGACGGCAACAAGGGCTATGACAAGGACTTTGGCAAGGATTCTGGCAAGGGCTCTGACAAGGGCTAC
GACATTGGCTTTGGCAAGGACTACAACAAGGGGTTCTGA
Gene >Ophio5|5997
ATGAAGTTTCTCCCCGTTGGAACCGCCTTCCTGGCGACGACGCTGGCCGCGCCCACTGGTGAAAAGCACGACTAC
AAGGACGTAGACTACAAGAACAGCTACGACGGCGACTACAAGAACGGCCAATACGGGGGTGACTACAAGAACAGC
TATGGCGGAGACTACAAGCACGGCCAATACGGGGGTGATTACAAAAATGGCGGCGACTGGAAGCATCGCGGCGAC
AAGCACGGCGACCTAGGCCGCAACTACGGAGAGTACGACGGCTACAAGCACGGCAAGTACGACGATGGCTGGAAG
AACGGCGGCATCGGCGTTCATGTTGGCGGGCTTGACGGCTTCAAGCACGGCGGTGACTACAAGCATGGCGGTGAC
TACAAGCATGGCGATGGCTTCAAGAAGGGAGGATACAACTACGGAGAATACGATGGCGGCAAGAAGAACGGCGGC
TGGAAGGGCGATGACTACAACCGCGGCGGTGACTGGAACAAGGGAGGTGACTACAAGAACGGCGGAGGTGATTGG
AACAAGGGTGGCGACTACAAGCACGGCGGTGATTACAAGCATGGCGGCGATTGGAACAAAGGTGGCGATGGTTTC
AAGGGCGGCAAAAACTACGGAGAGTATGACGGTGGCAAGAAGGGCGACTGGAAGGACGATGACTACAAGCACGGT
GGTGACTGGAACAAGGGTGGCGACTACAAGAACGGCGGCGACTGGAACAAAGGTGGCGATGGCTTCAAGGGCGGC
AAAAACTACGGAGAGTACGACAGTGGCAAGAAGGGCGACGGGAAGGATGATGGCCACAAGAGCGGCCTTGGGCTC
GGCGGTCTCGGCGGCCTTGATGGCCTCGGCAAGAGCCTCGACCTGGGTTGGTTGACCGGTAGCAAGCACCAGGGC
GGCAAGGGGTTCGACGGTGGCAAGTACGACAACGGGAAGTACGACAATGGCAAGTTTGGTGGCGGCAAGGACTAC
TCTGAGTGGGACGGCAACAAGGGCTATGACAAGGACTTTGGCAAGGATTCTGGCAAGGGCTCTGACAAGGGCTAC
GACATTGGCTTTGGCAAGGACTACAACAAGGGTTCTGACAATGACTTTGGCAAGGACTCTGGCAAGGACTTTGGC
AAGGACAAACACAACGACTCTGGCAAGGGTTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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