© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|599 |
| Gene name | |
| Location | scaffold_116:10706..11464 |
| Strand | + |
| Gene length (bp) | 758 |
| Transcript length (bp) | 633 |
| Coding sequence length (bp) | 630 |
| Protein length (aa) | 210 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01929 | Ribosomal_L14e | Ribosomal protein L14 | 4.8E-28 | 121 | 196 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36105|RL14A_YEAST | 60S ribosomal protein L14-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL14A PE=1 SV=1 | 66 | 205 | 1.0E-36 |
| sp|P38754|RL14B_YEAST | 60S ribosomal protein L14-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL14B PE=1 SV=1 | 66 | 205 | 2.0E-36 |
| sp|O94238|RL14_SCHPO | 60S ribosomal protein L14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl14 PE=2 SV=1 | 75 | 205 | 1.0E-28 |
| sp|Q63507|RL14_RAT | 60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3 | 75 | 195 | 1.0E-23 |
| sp|Q9CR57|RL14_MOUSE | 60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=1 SV=3 | 75 | 195 | 2.0E-23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36105|RL14A_YEAST | 60S ribosomal protein L14-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL14A PE=1 SV=1 | 66 | 205 | 1.0E-36 |
| sp|P38754|RL14B_YEAST | 60S ribosomal protein L14-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL14B PE=1 SV=1 | 66 | 205 | 2.0E-36 |
| sp|O94238|RL14_SCHPO | 60S ribosomal protein L14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl14 PE=2 SV=1 | 75 | 205 | 1.0E-28 |
| sp|Q63507|RL14_RAT | 60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3 | 75 | 195 | 1.0E-23 |
| sp|Q9CR57|RL14_MOUSE | 60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=1 SV=3 | 75 | 195 | 2.0E-23 |
| sp|A1XQU3|RL14_PIG | 60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=1 SV=1 | 75 | 195 | 3.0E-22 |
| sp|Q3T0U2|RL14_BOVIN | 60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3 | 75 | 195 | 3.0E-22 |
| sp|P50914|RL14_HUMAN | 60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4 | 75 | 195 | 7.0E-22 |
| sp|O46160|RL14_LUMRU | 60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1 | 75 | 195 | 2.0E-17 |
| sp|Q24C27|RL14_TETTS | 60S ribosomal protein L14 OS=Tetrahymena thermophila (strain SB210) GN=RPL14 PE=1 SV=2 | 75 | 194 | 8.0E-17 |
| sp|Q9SIM4|RL141_ARATH | 60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1 | 75 | 207 | 9.0E-17 |
| sp|Q9T043|RL142_ARATH | 60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1 | 75 | 207 | 7.0E-16 |
| sp|P55844|RL14_PEA | Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1 | 75 | 210 | 4.0E-15 |
| sp|Q7XYA7|RL14_GRIJA | 60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1 | 75 | 208 | 6.0E-15 |
| sp|P55841|RL14_DROME | 60S ribosomal protein L14 OS=Drosophila melanogaster GN=RpL14 PE=1 SV=1 | 75 | 195 | 8.0E-14 |
| sp|Q95ZE8|RL14_DROVI | 60S ribosomal protein L14 OS=Drosophila virilis GN=RpL14 PE=3 SV=1 | 75 | 195 | 3.0E-13 |
| sp|Q54Z09|RL14_DICDI | 60S ribosomal protein L14 OS=Dictyostelium discoideum GN=rpl14 PE=3 SV=1 | 76 | 187 | 3.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005840 | ribosome | Yes |
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0006518 | peptide metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043226 | organelle | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0005575 | cellular_component | No |
| GO:0005198 | structural molecule activity | No |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|599 MLWLVRAPLFIRIHQSERRNKVPRHLGHGRFSARTLYHPSQRIQSPTPWSDNKSSTNGHTTVKMGEALIEGSNWR LVEVGRVVVITGDHPYAGGLGAIVEIVDHKRVLVDGPSSDRELAVPRQCVPLSKCLLSQFVIDGLLRGSRHGTLK KLWEKCEIDDKWKQSNWAKKRDQMKRRKNLTDFDRFKVMRLQKQRRFEERKALAKIKASA |
| Coding | >Ophio5|599 ATGCTGTGGTTGGTCCGTGCACCGCTGTTTATCCGCATTCACCAGTCGGAGCGGCGAAATAAAGTGCCGAGACAC TTAGGGCATGGCCGATTTTCCGCCCGCACACTCTATCACCCGAGCCAGCGAATTCAGTCACCAACACCTTGGAGC GACAACAAGTCTTCGACTAACGGGCACACCACCGTCAAAATGGGCGAAGCACTCATTGAGGGATCAAACTGGCGC CTCGTCGAGGTCGGCCGCGTCGTTGTCATCACCGGCGACCACCCCTATGCGGGCGGCCTTGGCGCCATTGTCGAG ATCGTCGACCACAAGCGCGTTCTCGTCGATGGCCCTTCCTCAGACCGCGAGCTCGCCGTTCCCCGGCAATGCGTC CCCTTGTCCAAGTGCCTCCTGTCTCAGTTCGTCATCGATGGTCTACTTCGCGGCTCGCGCCACGGCACCCTCAAG AAGCTTTGGGAGAAATGTGAAATCGACGACAAATGGAAGCAGAGCAACTGGGCAAAAAAACGGGATCAAATGAAG CGACGGAAGAATCTGACGGATTTTGACCGCTTCAAGGTGATGCGACTCCAGAAGCAGCGACGATTCGAGGAGCGT AAGGCTCTGGCCAAGATCAAGGCCTCGGCA |
| Transcript | >Ophio5|599 ATGCTGTGGTTGGTCCGTGCACCGCTGTTTATCCGCATTCACCAGTCGGAGCGGCGAAATAAAGTGCCGAGACAC TTAGGGCATGGCCGATTTTCCGCCCGCACACTCTATCACCCGAGCCAGCGAATTCAGTCACCAACACCTTGGAGC GACAACAAGTCTTCGACTAACGGGCACACCACCGTCAAAATGGGCGAAGCACTCATTGAGGGATCAAACTGGCGC CTCGTCGAGGTCGGCCGCGTCGTTGTCATCACCGGCGACCACCCCTATGCGGGCGGCCTTGGCGCCATTGTCGAG ATCGTCGACCACAAGCGCGTTCTCGTCGATGGCCCTTCCTCAGACCGCGAGCTCGCCGTTCCCCGGCAATGCGTC CCCTTGTCCAAGTGCCTCCTGTCTCAGTTCGTCATCGATGGTCTACTTCGCGGCTCGCGCCACGGCACCCTCAAG AAGCTTTGGGAGAAATGTGAAATCGACGACAAATGGAAGCAGAGCAACTGGGCAAAAAAACGGGATCAAATGAAG CGACGGAAGAATCTGACGGATTTTGACCGCTTCAAGGTGATGCGACTCCAGAAGCAGCGACGATTCGAGGAGCGT AAGGCTCTGGCCAAGATCAAGGCCTCGGCATGA |
| Gene | >Ophio5|599 ATGCTGTGGTTGGTCCGTGCACCGCTGTTTATCCGCATTCACCAGTCGGAGCGGCGAAATAAAGTGCCGAGACAC TTAGGGCATGGCCGATTTTCCGCCCGCACACTCTATCACCCGAGCCAGCGAATTCAGTCACCAACACCTTGGAGC GACAACAAGTCTTCGACTAACGGTACGCGCACCCTTGATCTCATGATAAATTTTTCCAAGCAAGCGTAGCTCATA CACGACAAGCAGGGCACACCACCGTCAAAATGGGCGAAGCACTCATTGAGGGATCAAACTGGCGCCTCGTCGAGG TCGGCCGCGTCGTTGTCATCACCGGCGACCACCCCTATGCGGGCGGCCTTGGCGCCATTGTCGAGATCGTCGACC ACAAGCGCGTGAGTTTCCCCTCGTCGAGAGCAGCTTTGGATCGACTATAACACTTATTGTCTCGACAGGTTCTCG TCGATGGCCCTTCCTCAGACCGCGAGCTCGCCGTTCCCCGGCAATGCGTCCCCTTGTCCAAGTGCCTCCTGTCTC AGTTCGTCATCGATGGTCTACTTCGCGGCTCGCGCCACGGCACCCTCAAGAAGCTTTGGGAGAAATGTGAAATCG ACGACAAATGGAAGCAGAGCAACTGGGCAAAAAAACGGGATCAAATGAAGCGACGGAAGAATCTGACGGATTTTG ACCGCTTCAAGGTGATGCGACTCCAGAAGCAGCGACGATTCGAGGAGCGTAAGGCTCTGGCCAAGATCAAGGCCT CGGCATGA |