Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|59
Gene name
Location	scaffold_1:145530..146750
Strand	-
Gene length (bp)	1220
Transcript length (bp)	1155
Coding sequence length (bp)	1152
Protein length (aa)	384

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14610	Psg1	Ykl077w/Psg1 (Pma1 Stabilization in Golgi)	3.8E-35	119	295

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 22	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	266	288	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	46.28	23.93	68.62
CcL	In ants, during behavior modification	111.10	59.65	162.56
CcD	In ants, recently dead	83.18	45.66	120.70

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.000286	yes
SC16a	CcD	0.007782	yes
CcL	CcD	0.205489	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|59 MKTSGASALFASLALAGLCVAMPSPTPTAVPLLVRRGEDELTVSEEDYTTVAPTAPWVTVDDEGQPAMTVTPSIN TISGTTTVEHGAPHDLTASVYTWITWGAITTSTGTPPNPTAVDGKTGQGAFSRCFNRDDQELAPFCRPLANSTLL TGTTYYVTWDPDFYKNAASDNTTTLEVAVRLDFLNQSSNEWAKLDTYDRVPAKWGFWPLRLRTEHLKGQRYNNAT ITLVVSPRGGDERNKSVALPVTLTSLGVDDMPPPRVPKGSTLLIALPVSLASFFLVLIGLYLWHRQTRTINLGNI MGRSRHGYNGRRHRRHRFLASARHRQQQQQQQQQQPHPQEEPRVPLNTVATEFRDLPSPTEDPDVVGGLQREKMK LYGAKGPRR
Coding	>Ophio5\|59 ATGAAGACCAGCGGCGCGTCCGCCCTCTTCGCCAGCTTGGCCCTCGCCGGTCTCTGCGTCGCCATGCCCTCTCCC ACGCCTACAGCAGTCCCCCTACTCGTCCGTCGGGGAGAGGACGAATTGACGGTCTCGGAAGAAGACTATACCACC GTCGCCCCGACTGCCCCCTGGGTCACCGTCGACGATGAGGGTCAACCTGCCATGACGGTCACGCCGTCGATCAAT ACCATCAGCGGCACAACGACGGTCGAGCACGGCGCTCCGCACGACCTGACGGCCTCCGTCTATACTTGGATCACT TGGGGCGCCATCACCACCAGCACCGGCACGCCTCCTAACCCAACCGCCGTCGACGGCAAGACGGGTCAGGGCGCC TTTTCGCGTTGCTTCAACCGTGACGACCAAGAGCTCGCTCCTTTCTGCCGGCCATTGGCCAACTCGACACTTCTC ACAGGCACAACCTACTACGTCACTTGGGATCCCGACTTCTACAAAAACGCCGCGTCGGACAACACCACCACCCTC GAGGTAGCCGTCCGACTCGACTTCCTCAACCAAAGCAGCAACGAATGGGCCAAGCTCGACACCTACGACCGCGTC CCCGCCAAATGGGGCTTCTGGCCCTTGCGCCTCCGGACGGAGCACCTCAAGGGCCAGCGCTACAACAACGCCACC ATCACCCTCGTCGTCTCCCCTCGAGGCGGCGACGAGCGCAACAAGTCGGTCGCCCTCCCCGTCACCCTGACCAGC CTCGGCGTCGACGACATGCCTCCCCCGCGTGTCCCCAAGGGTTCCACCCTCCTCATCGCCCTGCCCGTCTCCCTC GCCTCCTTTTTCCTCGTCCTCATCGGCTTGTACCTCTGGCATCGTCAGACGCGTACCATCAACCTCGGCAACATC ATGGGCCGCTCTCGTCACGGTTATAACGGCCGTCGTCACCGCCGTCACCGTTTCCTCGCTTCCGCTCGCCACCGC CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCATCCCCAGGAAGAGCCCCGCGTGCCGCTCAACACCGTCGCC ACCGAATTCCGCGACTTGCCCTCCCCGACCGAGGACCCAGACGTCGTCGGTGGTCTGCAGCGCGAAAAGATGAAG CTCTACGGCGCAAAGGGTCCGAGACGG
Transcript	>Ophio5\|59 ATGAAGACCAGCGGCGCGTCCGCCCTCTTCGCCAGCTTGGCCCTCGCCGGTCTCTGCGTCGCCATGCCCTCTCCC ACGCCTACAGCAGTCCCCCTACTCGTCCGTCGGGGAGAGGACGAATTGACGGTCTCGGAAGAAGACTATACCACC GTCGCCCCGACTGCCCCCTGGGTCACCGTCGACGATGAGGGTCAACCTGCCATGACGGTCACGCCGTCGATCAAT ACCATCAGCGGCACAACGACGGTCGAGCACGGCGCTCCGCACGACCTGACGGCCTCCGTCTATACTTGGATCACT TGGGGCGCCATCACCACCAGCACCGGCACGCCTCCTAACCCAACCGCCGTCGACGGCAAGACGGGTCAGGGCGCC TTTTCGCGTTGCTTCAACCGTGACGACCAAGAGCTCGCTCCTTTCTGCCGGCCATTGGCCAACTCGACACTTCTC ACAGGCACAACCTACTACGTCACTTGGGATCCCGACTTCTACAAAAACGCCGCGTCGGACAACACCACCACCCTC GAGGTAGCCGTCCGACTCGACTTCCTCAACCAAAGCAGCAACGAATGGGCCAAGCTCGACACCTACGACCGCGTC CCCGCCAAATGGGGCTTCTGGCCCTTGCGCCTCCGGACGGAGCACCTCAAGGGCCAGCGCTACAACAACGCCACC ATCACCCTCGTCGTCTCCCCTCGAGGCGGCGACGAGCGCAACAAGTCGGTCGCCCTCCCCGTCACCCTGACCAGC CTCGGCGTCGACGACATGCCTCCCCCGCGTGTCCCCAAGGGTTCCACCCTCCTCATCGCCCTGCCCGTCTCCCTC GCCTCCTTTTTCCTCGTCCTCATCGGCTTGTACCTCTGGCATCGTCAGACGCGTACCATCAACCTCGGCAACATC ATGGGCCGCTCTCGTCACGGTTATAACGGCCGTCGTCACCGCCGTCACCGTTTCCTCGCTTCCGCTCGCCACCGC CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCATCCCCAGGAAGAGCCCCGCGTGCCGCTCAACACCGTCGCC ACCGAATTCCGCGACTTGCCCTCCCCGACCGAGGACCCAGACGTCGTCGGTGGTCTGCAGCGCGAAAAGATGAAG CTCTACGGCGCAAAGGGTCCGAGACGGTAA
Gene	>Ophio5\|59 ATGAAGACCAGCGGCGCGTCCGCCCTCTTCGCCAGCTTGGCCCTCGCCGGTCTCTGCGTCGCCATGCCCTCTCCC ACGCCTACAGCAGTCCCCCTACTCGTCCGTCGGGGAGAGGACGAATTGACGGTCTCGGAAGAAGACTATACCACC GTCGCCCCGACTGCCCCCTGGGTCACCGTCGACGATGAGGGTCAACCTGCCATGACGGTCACGCCGTCGATCAAT ACCATCAGCGGCACAACGACGGTCGAGCACGGCGCTCCGCACGACCTGACGGCCTCCGTCTATACTTGGATCACT TGGGGCGCCATCACCACCAGCACCGGCACGCCTCCTAACCCAACCGCCGTCGACGGCAAGACGGGTCAGGGCGCC TTTTCGCGTTGCTTCAACCGTGACGACCAAGAGCTCGCTCCTTTCTGCCGGCCATTGGCCAACTCGACACTTCTC ACAGGCACAACCTACTACGGTAATATATATATATAGGACCAACCTCCTTTTGATTCCCACCACTAACAAAACTCT CCCCTCAAGTCACTTGGGATCCCGACTTCTACAAAAACGCCGCGTCGGACAACACCACCACCCTCGAGGTAGCCG TCCGACTCGACTTCCTCAACCAAAGCAGCAACGAATGGGCCAAGCTCGACACCTACGACCGCGTCCCCGCCAAAT GGGGCTTCTGGCCCTTGCGCCTCCGGACGGAGCACCTCAAGGGCCAGCGCTACAACAACGCCACCATCACCCTCG TCGTCTCCCCTCGAGGCGGCGACGAGCGCAACAAGTCGGTCGCCCTCCCCGTCACCCTGACCAGCCTCGGCGTCG ACGACATGCCTCCCCCGCGTGTCCCCAAGGGTTCCACCCTCCTCATCGCCCTGCCCGTCTCCCTCGCCTCCTTTT TCCTCGTCCTCATCGGCTTGTACCTCTGGCATCGTCAGACGCGTACCATCAACCTCGGCAACATCATGGGCCGCT CTCGTCACGGTTATAACGGCCGTCGTCACCGCCGTCACCGTTTCCTCGCTTCCGCTCGCCACCGCCAGCAGCAGC AGCAGCAGCAGCAGCAGCAGCCCCATCCCCAGGAAGAGCCCCGCGTGCCGCTCAACACCGTCGCCACCGAATTCC GCGACTTGCCCTCCCCGACCGAGGACCCAGACGTCGTCGGTGGTCTGCAGCGCGAAAAGATGAAGCTCTACGGCG CAAAGGGTCCGAGACGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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