© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5888 |
| Gene name | |
| Location | scaffold_497:7400..8715 |
| Strand | - |
| Gene length (bp) | 1315 |
| Transcript length (bp) | 1197 |
| Coding sequence length (bp) | 1194 |
| Protein length (aa) | 398 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 2.0E-09 | 74 | 204 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 1.4E-07 | 74 | 203 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide | 0.2406 | 0.1963 | 0.5445 | 0.1499 | 0.4237 | 0.0624 | 0.6973 | 0.179 | 0.348 | 0.0423 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 21 | 17 |
| 2 | 73 | 95 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6753 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5888 MCGITATVVLLVASCLVLYGLHVNRLMKQTPPEALAYLDPPLTPDHARLIYRRVKENGIDWNANLPPAKDRRYLI VGGSGLVGGQIAACLQATGVPPQAIRIVDLLPPAQAELASSAGTEVAWFKADITSQQSVDAAFSEPWPATVLGLP LTVFHTAAVIRPFERDPVFYPRCARVNVLGSAHVLAAARRAGAGVLIFTSSCNAGASGRGRLLAAAAAGAAVPHY VCRVQGRGGEDAVRGGQRRDADGGDPAGQRRIREPARSHHQLYAGVAGAADVCRAVGSELGKRAQRGAGASAARG GAAGRASGPGGGTAVYGSRRWAAASVSGRIHDARGDELDILPRELPATGADAAGGVRHRGLLSTIGEGWTAAKAA GGAGRFVADAAAGNHVVVRDEPY |
| Coding | >Ophio5|5888 ATGTGCGGCATCACCGCCACCGTCGTGCTGCTCGTCGCCTCATGCCTCGTGCTCTACGGCCTTCACGTCAACCGC CTCATGAAGCAGACGCCGCCCGAGGCTCTTGCCTACCTCGACCCGCCCCTGACGCCGGATCACGCCCGACTCATC TACCGGCGCGTCAAGGAGAATGGAATCGACTGGAACGCAAACCTGCCACCAGCCAAAGACAGACGCTACCTCATC GTCGGCGGCTCCGGTCTTGTCGGCGGGCAGATCGCGGCGTGTCTCCAGGCGACGGGCGTGCCTCCTCAAGCTATC CGCATCGTGGACCTGCTTCCGCCTGCTCAGGCCGAGCTCGCGTCAAGCGCCGGTACCGAGGTGGCCTGGTTCAAG GCCGACATTACATCGCAGCAGTCGGTCGATGCCGCCTTCTCCGAGCCGTGGCCCGCGACTGTGTTGGGCCTGCCG CTGACCGTCTTCCACACGGCCGCCGTCATCCGTCCCTTTGAGCGCGACCCGGTCTTTTACCCGCGCTGTGCCCGT GTCAACGTCCTCGGTTCGGCTCACGTGCTGGCGGCCGCGCGCAGGGCCGGTGCCGGCGTCTTGATCTTCACATCT AGCTGCAACGCGGGTGCCAGCGGCCGAGGACGACTTCTGGCGGCCGCTGCGGCCGGCGCGGCAGTTCCCCACTAC GTATGCCGTGTCCAAGGCCGAGGCGGAGAGGATGCTGTGCGGGGCGGACAGCGCCGGGATGCGGACGGCGGCGAT CCGGCCGGGCAACGGCGTATACGGGAACCGGCACGATCACATCATCAGCTATATGCTGGCGTCGCGGGAGCTGCC GACGTTTGCCGCGCCGTGGGTTCAGAACTGGGCAAACGTGCACAACGTGGCGCAGGCGCATCTGCTGCTCGAGGA GGCGCTGCTGGGCGAGCAAGCGGACCGGGTGGCGGGACGGCCGTTTATGGTAGCAGACGGTGGGCCGCCGCTTCG GTTTCAGGACGTATACACGATGCTCGAGGCGACGAGCTCGACATACTTCCGCGTGAGCTACCCGCCACCGGTGCT GATGCTGCTGGCGGCGTACGGCATCGAGGCCTACTGTCGACTATTGGCGAGGGCTGGACCGCTGCGAAGGCTGCT GGGGGAGCCGGGCGATTCGTTGCGGATGCTGCAGCCGGGAACCATGTCGTCGTCCGTGACGAGCCTTAT |
| Transcript | >Ophio5|5888 ATGTGCGGCATCACCGCCACCGTCGTGCTGCTCGTCGCCTCATGCCTCGTGCTCTACGGCCTTCACGTCAACCGC CTCATGAAGCAGACGCCGCCCGAGGCTCTTGCCTACCTCGACCCGCCCCTGACGCCGGATCACGCCCGACTCATC TACCGGCGCGTCAAGGAGAATGGAATCGACTGGAACGCAAACCTGCCACCAGCCAAAGACAGACGCTACCTCATC GTCGGCGGCTCCGGTCTTGTCGGCGGGCAGATCGCGGCGTGTCTCCAGGCGACGGGCGTGCCTCCTCAAGCTATC CGCATCGTGGACCTGCTTCCGCCTGCTCAGGCCGAGCTCGCGTCAAGCGCCGGTACCGAGGTGGCCTGGTTCAAG GCCGACATTACATCGCAGCAGTCGGTCGATGCCGCCTTCTCCGAGCCGTGGCCCGCGACTGTGTTGGGCCTGCCG CTGACCGTCTTCCACACGGCCGCCGTCATCCGTCCCTTTGAGCGCGACCCGGTCTTTTACCCGCGCTGTGCCCGT GTCAACGTCCTCGGTTCGGCTCACGTGCTGGCGGCCGCGCGCAGGGCCGGTGCCGGCGTCTTGATCTTCACATCT AGCTGCAACGCGGGTGCCAGCGGCCGAGGACGACTTCTGGCGGCCGCTGCGGCCGGCGCGGCAGTTCCCCACTAC GTATGCCGTGTCCAAGGCCGAGGCGGAGAGGATGCTGTGCGGGGCGGACAGCGCCGGGATGCGGACGGCGGCGAT CCGGCCGGGCAACGGCGTATACGGGAACCGGCACGATCACATCATCAGCTATATGCTGGCGTCGCGGGAGCTGCC GACGTTTGCCGCGCCGTGGGTTCAGAACTGGGCAAACGTGCACAACGTGGCGCAGGCGCATCTGCTGCTCGAGGA GGCGCTGCTGGGCGAGCAAGCGGACCGGGTGGCGGGACGGCCGTTTATGGTAGCAGACGGTGGGCCGCCGCTTCG GTTTCAGGACGTATACACGATGCTCGAGGCGACGAGCTCGACATACTTCCGCGTGAGCTACCCGCCACCGGTGCT GATGCTGCTGGCGGCGTACGGCATCGAGGCCTACTGTCGACTATTGGCGAGGGCTGGACCGCTGCGAAGGCTGCT GGGGGAGCCGGGCGATTCGTTGCGGATGCTGCAGCCGGGAACCATGTCGTCGTCCGTGACGAGCCTTATTGA |
| Gene | >Ophio5|5888 ATGTGCGGCATCACCGCCACCGTCGTGCTGCTCGTCGCCTCATGCCTCGTGCTCTACGGCCTTCACGTCAACCGC CTCATGAAGCAGACGCCGCCCGAGGCTCTTGCCTACCTCGACCCGCCCCTGACGCCGGATCACGCCCGACTCATC TACCGGCGCGTCAAGGAGAATGGAATCGACTGGAACGCAAACCTGCCACCAGCCAAAGACAGACGCTACCTCATC GTCGGCGGCTCCGGTGAGCTTGCTTCCCCCAAGCGCCCTCCCCCCGTCCGGTCACTAAGCCGCGTCGGACAGGTC TTGTCGGCGGGCAGATCGCGGCGTGTCTCCAGGCGACGGGCGTGCCTCCTCAAGCTATCCGCATCGTGGACCTGC TTCCGCCTGCTCAGGCCGAGCTCGCGTCAAGCGCCGGTACCGAGGTGGCCTGGTTCAAGGCCGACATTACATCGC AGCAGTCGGTCGATGCCGCCTTCTCCGAGCCGTGGCCCGCGACTGTGTTGGGCCTGCCGCTGACCGTCTTCCACA CGGCCGCCGTCATCCGTCCCTTTGAGCGCGACCCGGTCTTTTACCCGCGCTGTGCCCGTGTCAACGTCCTCGGTT CGGCTCACGTGCTGGCGGCCGCGCGCAGGGCCGGTGCCGGCGTCTTGATCTTCACATCTAGCTGCAACGCGGGTG CCAGCGGCGTAAACTGGCTCTTCCCGCCATGGATCCGGCGTCCGCGGCAGATGGCGCAACGTATCAGCGAGGACG ACTTCTGGCGGCCGCTGCGGCCGGCGCGGCAGTTCCCCACTACGTATGCCGTGTCCAAGGCCGAGGCGGAGAGGA TGCTGTGCGGGGCGGACAGCGCCGGGATGCGGACGGCGGCGATCCGGCCGGGCAACGGCGTATACGGGAACCGGC ACGATCACATCATCAGCTATATGCTGGCGTCGCGGGAGCTGCCGACGTTTGCCGCGCCGTGGGTTCAGAACTGGG CAAACGTGCACAACGTGGCGCAGGCGCATCTGCTGCTCGAGGAGGCGCTGCTGGGCGAGCAAGCGGACCGGGTGG CGGGACGGCCGTTTATGGTAGCAGACGGTGGGCCGCCGCTTCGGTTTCAGGACGTATACACGATGCTCGAGGCGA CGAGCTCGACATACTTCCGCGTGAGCTACCCGCCACCGGTGCTGATGCTGCTGGCGGCGTACGGCATCGAGGCCT ACTGTCGACTATTGGCGAGGGCTGGACCGCTGCGAAGGCTGCTGGGGGAGCCGGGCGATTCGTTGCGGATGCTGC AGCCGGGAACCATGTCGTCGTCCGTGACGAGCCTTATTGA |