© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5864 |
| Gene name | |
| Location | scaffold_493:4868..6384 |
| Strand | - |
| Gene length (bp) | 1516 |
| Transcript length (bp) | 1374 |
| Coding sequence length (bp) | 1371 |
| Protein length (aa) | 457 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00002 | 7tm_2 | 7 transmembrane receptor (Secretin family) | 1.0E-11 | 27 | 206 |
| PF05462 | Dicty_CAR | Slime mold cyclic AMP receptor | 1.9E-11 | 26 | 190 |
| PF00001 | 7tm_1 | 7 transmembrane receptor (rhodopsin family) | 3.2E-08 | 36 | 371 |
| PF11710 | Git3 | G protein-coupled glucose receptor regulating Gpa2 | 7.2E-07 | 26 | 195 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O04714|GCR1_ARATH | G-protein coupled receptor 1 OS=Arabidopsis thaliana GN=GCR1 PE=1 SV=1 | 12 | 206 | 2.0E-11 |
| sp|Q54U75|CRLA_DICDI | Cyclic AMP receptor-like protein A OS=Dictyostelium discoideum GN=crlA PE=2 SV=1 | 6 | 194 | 9.0E-09 |
| sp|Q60755|CALCR_MOUSE | Calcitonin receptor OS=Mus musculus GN=Calcr PE=2 SV=2 | 81 | 211 | 2.0E-07 |
| sp|P34907|CAR2_DICDI | Cyclic AMP receptor 2 OS=Dictyostelium discoideum GN=carB PE=2 SV=2 | 14 | 243 | 5.0E-07 |
| sp|P13773|CAR1_DICDI | Cyclic AMP receptor 1 OS=Dictyostelium discoideum GN=carA-1 PE=1 SV=1 | 31 | 242 | 2.0E-06 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O04714|GCR1_ARATH | G-protein coupled receptor 1 OS=Arabidopsis thaliana GN=GCR1 PE=1 SV=1 | 12 | 206 | 2.0E-11 |
| sp|Q54U75|CRLA_DICDI | Cyclic AMP receptor-like protein A OS=Dictyostelium discoideum GN=crlA PE=2 SV=1 | 6 | 194 | 9.0E-09 |
| sp|Q60755|CALCR_MOUSE | Calcitonin receptor OS=Mus musculus GN=Calcr PE=2 SV=2 | 81 | 211 | 2.0E-07 |
| sp|P34907|CAR2_DICDI | Cyclic AMP receptor 2 OS=Dictyostelium discoideum GN=carB PE=2 SV=2 | 14 | 243 | 5.0E-07 |
| sp|P13773|CAR1_DICDI | Cyclic AMP receptor 1 OS=Dictyostelium discoideum GN=carA-1 PE=1 SV=1 | 31 | 242 | 2.0E-06 |
| sp|P30988|CALCR_HUMAN | Calcitonin receptor OS=Homo sapiens GN=CALCR PE=1 SV=2 | 64 | 211 | 3.0E-06 |
| sp|O08893|CALCR_CAVPO | Calcitonin receptor OS=Cavia porcellus GN=CALCR PE=2 SV=1 | 23 | 211 | 3.0E-06 |
| sp|P32214|CALCR_RAT | Calcitonin receptor OS=Rattus norvegicus GN=Calcr PE=2 SV=1 | 81 | 211 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0007186 | G protein-coupled receptor signaling pathway | Yes |
| GO:0004930 | G protein-coupled receptor activity | Yes |
| GO:0007165 | signal transduction | No |
| GO:0060089 | molecular transducer activity | No |
| GO:0009987 | cellular process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0065007 | biological regulation | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0004888 | transmembrane signaling receptor activity | No |
| GO:0038023 | signaling receptor activity | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 55 | 77 | 22 |
| 3 | 92 | 114 | 22 |
| 4 | 126 | 148 | 22 |
| 5 | 172 | 194 | 22 |
| 6 | 316 | 338 | 22 |
| 7 | 358 | 380 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5864 MATNPSPQHHELTLEQRTAIIAIERACSVLSLLGCIFTIVTFCSSRAFHKPINRLVFYASFGNMLTNVGTLMSNA YLRELDSFGCQFQSFLIQTFMPADAFWTLAMAINVYLTFYHKFDAERLRKMEFIYLLGCYGVPLVPAFAYIFARN SRGERIYGNATLWCWISSEYDILRIATFYGPVWVTILITFFIYIRAGRTIYEKRKQLYDFEMSDPDPLSINGEVV ATMRRTEVTVTGEDAYPSSGAIHLVPLNRQKAADKSNGCEDAYSIHIMADHCPSPSSDVASSPGKPTQQMQVAPQ RTPNPARRRHHELNNAAWSYTKCAILFFTAILITWIPSSANRVYSVVHQNEVFPPLEFMSAFVLPLQGFWNAVIY AVTSWSACQKLLDDLTPSRYRRGIKPVVQTTLSPDPNSLAAAEQGLAPKARSPPRSSRTFDSESMTELAKSRTAS ADEGRDC |
| Coding | >Ophio5|5864 ATGGCCACGAATCCCTCGCCACAGCACCACGAGTTGACGCTGGAGCAGCGCACCGCTATCATTGCCATCGAGCGC GCCTGCTCCGTCCTCTCTCTGCTGGGATGCATCTTCACCATTGTCACGTTTTGCTCTTCGCGAGCTTTTCACAAG CCCATCAACCGGCTGGTGTTTTACGCCTCCTTTGGTAACATGTTGACCAATGTCGGCACTCTCATGTCCAATGCC TACCTCAGAGAGCTCGACTCCTTCGGCTGCCAGTTCCAGTCCTTCTTGATTCAGACTTTCATGCCTGCGGATGCC TTTTGGACATTGGCCATGGCCATCAACGTCTACCTCACCTTTTATCACAAGTTTGATGCCGAGAGGCTACGCAAG ATGGAGTTTATCTACCTGCTCGGCTGCTACGGCGTCCCTCTCGTCCCGGCTTTTGCCTACATCTTCGCCCGAAAC TCGCGAGGAGAGCGCATCTATGGCAACGCCACGCTTTGGTGCTGGATCTCGAGCGAGTACGACATCCTGCGCATC GCCACCTTCTACGGGCCCGTCTGGGTCACCATTCTCATCACATTCTTCATCTACATCCGTGCTGGACGCACCATC TACGAGAAGCGCAAGCAGCTGTACGACTTCGAGATGTCAGATCCGGACCCTTTATCCATCAATGGCGAGGTAGTG GCGACAATGAGGCGGACCGAGGTGACGGTAACGGGAGAGGACGCATACCCGTCCTCTGGCGCCATCCATCTTGTA CCCCTAAACAGACAAAAGGCGGCCGACAAGTCAAACGGCTGCGAAGACGCCTACTCGATTCACATCATGGCCGAC CACTGCCCATCGCCTTCGTCGGACGTGGCTTCATCGCCAGGCAAGCCAACCCAGCAGATGCAAGTAGCCCCTCAG CGGACGCCCAACCCAGCACGACGACGCCATCATGAACTCAACAACGCAGCCTGGTCCTACACCAAGTGTGCCATT CTCTTCTTCACCGCCATCCTCATCACCTGGATCCCTTCGAGTGCCAACCGCGTCTACTCGGTCGTTCACCAGAAC GAGGTCTTCCCGCCGCTCGAGTTCATGAGCGCCTTCGTCTTGCCCCTTCAGGGCTTCTGGAACGCCGTCATCTAC GCCGTCACCTCCTGGAGCGCCTGTCAGAAGCTGCTCGACGACCTGACGCCGAGTCGCTACCGTCGTGGCATCAAG CCCGTCGTCCAGACTACCTTGTCGCCCGATCCGAACTCGCTTGCTGCCGCTGAGCAGGGTCTCGCCCCTAAGGCT CGCTCGCCGCCTCGGAGCTCACGCACTTTTGACTCGGAGAGCATGACGGAGCTGGCAAAATCGCGCACTGCTTCG GCAGACGAGGGCCGCGATTGC |
| Transcript | >Ophio5|5864 ATGGCCACGAATCCCTCGCCACAGCACCACGAGTTGACGCTGGAGCAGCGCACCGCTATCATTGCCATCGAGCGC GCCTGCTCCGTCCTCTCTCTGCTGGGATGCATCTTCACCATTGTCACGTTTTGCTCTTCGCGAGCTTTTCACAAG CCCATCAACCGGCTGGTGTTTTACGCCTCCTTTGGTAACATGTTGACCAATGTCGGCACTCTCATGTCCAATGCC TACCTCAGAGAGCTCGACTCCTTCGGCTGCCAGTTCCAGTCCTTCTTGATTCAGACTTTCATGCCTGCGGATGCC TTTTGGACATTGGCCATGGCCATCAACGTCTACCTCACCTTTTATCACAAGTTTGATGCCGAGAGGCTACGCAAG ATGGAGTTTATCTACCTGCTCGGCTGCTACGGCGTCCCTCTCGTCCCGGCTTTTGCCTACATCTTCGCCCGAAAC TCGCGAGGAGAGCGCATCTATGGCAACGCCACGCTTTGGTGCTGGATCTCGAGCGAGTACGACATCCTGCGCATC GCCACCTTCTACGGGCCCGTCTGGGTCACCATTCTCATCACATTCTTCATCTACATCCGTGCTGGACGCACCATC TACGAGAAGCGCAAGCAGCTGTACGACTTCGAGATGTCAGATCCGGACCCTTTATCCATCAATGGCGAGGTAGTG GCGACAATGAGGCGGACCGAGGTGACGGTAACGGGAGAGGACGCATACCCGTCCTCTGGCGCCATCCATCTTGTA CCCCTAAACAGACAAAAGGCGGCCGACAAGTCAAACGGCTGCGAAGACGCCTACTCGATTCACATCATGGCCGAC CACTGCCCATCGCCTTCGTCGGACGTGGCTTCATCGCCAGGCAAGCCAACCCAGCAGATGCAAGTAGCCCCTCAG CGGACGCCCAACCCAGCACGACGACGCCATCATGAACTCAACAACGCAGCCTGGTCCTACACCAAGTGTGCCATT CTCTTCTTCACCGCCATCCTCATCACCTGGATCCCTTCGAGTGCCAACCGCGTCTACTCGGTCGTTCACCAGAAC GAGGTCTTCCCGCCGCTCGAGTTCATGAGCGCCTTCGTCTTGCCCCTTCAGGGCTTCTGGAACGCCGTCATCTAC GCCGTCACCTCCTGGAGCGCCTGTCAGAAGCTGCTCGACGACCTGACGCCGAGTCGCTACCGTCGTGGCATCAAG CCCGTCGTCCAGACTACCTTGTCGCCCGATCCGAACTCGCTTGCTGCCGCTGAGCAGGGTCTCGCCCCTAAGGCT CGCTCGCCGCCTCGGAGCTCACGCACTTTTGACTCGGAGAGCATGACGGAGCTGGCAAAATCGCGCACTGCTTCG GCAGACGAGGGCCGCGATTGCTGA |
| Gene | >Ophio5|5864 ATGGCCACGAATCCCTCGCCACAGCACCACGAGTTGACGCTGGAGCAGCGCACCGCTATCATTGCCATCGAGCGC GCCTGCTCCGTCCTCTCTCTGCTGGGATGCATCTTCACCATTGTCACGTTTTGCTCTTCGCGAGCTTTTCACAAG CCCATCAACCGGCTGGTGTTTTACGCCTCCTTTGGTAACATGTTGACCAATGTCGGCACTCTCATGTCCAATGCC TACCTCAGAGAGCTCGACTCCTTCGGCTGCCAGTTCCAGTCCTTCTTGATTCAGACGTTGGTCTCTCGTCTTGTC GTCAAAGTCTTCTTTTTTTTTTTTTGGTCATCTGAGTTGATGGTCTTGCCAGTTTCATGCCTGCGGATGCCTTTT GGACATTGGCCATGGCCATCAACGTCTACCTCACCTTTTATCACAAGTTTGATGCCGAGAGGCTACGCAAGATGG AGTTTATCTACCTGCTCGGCTGCTACGGCGTCCCTCTCGTCCCGGCTTTTGCCTACATCTTCGCCCGAAACTCGC GAGGAGAGCGCATCTATGGCAACGCCACGCTTTGGTGCTGGATCTCGAGCGAGTACGACATCCTGCGCATCGCCA CCTTCTACGGGCCCGTCTGGTAAAGCCACTTGATCGCTTTGGTCGTCGGTGTCGGTAGCTGACGGCGATAAAAAA AAAAAAAAAAAACAGGGTCACCATTCTCATCACATTCTTCATCTACATCCGTGCTGGACGCACCATCTACGAGAA GCGCAAGCAGCTGTACGACTTCGAGATGTCAGATCCGGACCCTTTATCCATCAATGGCGAGGTAGTGGCGACAAT GAGGCGGACCGAGGTGACGGTAACGGGAGAGGACGCATACCCGTCCTCTGGCGCCATCCATCTTGTACCCCTAAA CAGACAAAAGGCGGCCGACAAGTCAAACGGCTGCGAAGACGCCTACTCGATTCACATCATGGCCGACCACTGCCC ATCGCCTTCGTCGGACGTGGCTTCATCGCCAGGCAAGCCAACCCAGCAGATGCAAGTAGCCCCTCAGCGGACGCC CAACCCAGCACGACGACGCCATCATGAACTCAACAACGCAGCCTGGTCCTACACCAAGTGTGCCATTCTCTTCTT CACCGCCATCCTCATCACCTGGATCCCTTCGAGTGCCAACCGCGTCTACTCGGTCGTTCACCAGAACGAGGTCTT CCCGCCGCTCGAGTTCATGAGCGCCTTCGTCTTGCCCCTTCAGGGCTTCTGGAACGCCGTCATCTACGCCGTCAC CTCCTGGAGCGCCTGTCAGAAGCTGCTCGACGACCTGACGCCGAGTCGCTACCGTCGTGGCATCAAGCCCGTCGT CCAGACTACCTTGTCGCCCGATCCGAACTCGCTTGCTGCCGCTGAGCAGGGTCTCGCCCCTAAGGCTCGCTCGCC GCCTCGGAGCTCACGCACTTTTGACTCGGAGAGCATGACGGAGCTGGCAAAATCGCGCACTGCTTCGGCAGACGA GGGCCGCGATTGCTGA |