Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5857
Gene name
Locationscaffold_491:14343..15047
Strand+
Gene length (bp)704
Transcript length (bp)573
Coding sequence length (bp)570
Protein length (aa) 190

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10311 Ilm1 Increased loss of mitochondrial DNA protein 1 8.2E-66 4 178

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 22 0.5

Transmembrane Domains

Domain # Start End Length
1 9 31 22
2 57 79 22
3 86 108 22
4 149 168 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5857
MPLIGSKTIITSVSLFHVTIAFFFLTDPHTIHDQILVYVLGESMGMPVARGFDAQSQPLAFLAAVLAMFGLCDLF
ALSMPEELSSLYYWGVQAPLRSLFSMLLVFYSYFFGPSSPVYGASAPRSTSRPSANSTSYRSSTWGGDGLKNRVF
FTFIFLEMITWFWIWVTLREERQGVVERMRKQHSRPNKQG
Coding >Ophio5|5857
ATGCCGCTCATCGGGTCCAAGACAATCATTACCTCCGTCTCCCTCTTCCACGTCACCATCGCCTTCTTCTTCCTC
ACGGATCCGCACACCATCCACGACCAGATTCTCGTCTATGTGCTGGGCGAGAGCATGGGCATGCCCGTGGCCCGT
GGCTTCGACGCCCAGAGCCAACCGCTAGCCTTTCTCGCCGCTGTGCTGGCCATGTTCGGGCTCTGCGATCTCTTT
GCGCTGTCTATGCCGGAGGAGCTCTCTTCGCTGTACTATTGGGGCGTTCAGGCGCCTCTTCGCTCTCTCTTCTCC
ATGCTCCTCGTCTTTTACTCGTACTTTTTTGGCCCCTCCTCTCCCGTCTACGGCGCCTCGGCCCCGCGATCCACC
TCTCGGCCTTCGGCCAACTCGACGTCCTACCGCTCCTCCACCTGGGGTGGCGATGGTCTAAAGAATCGCGTCTTC
TTCACCTTCATCTTTCTTGAGATGATAACATGGTTTTGGATCTGGGTCACGCTGCGGGAGGAGAGGCAAGGCGTT
GTCGAACGAATGCGGAAGCAGCACTCGCGGCCTAATAAGCAGGGG
Transcript >Ophio5|5857
ATGCCGCTCATCGGGTCCAAGACAATCATTACCTCCGTCTCCCTCTTCCACGTCACCATCGCCTTCTTCTTCCTC
ACGGATCCGCACACCATCCACGACCAGATTCTCGTCTATGTGCTGGGCGAGAGCATGGGCATGCCCGTGGCCCGT
GGCTTCGACGCCCAGAGCCAACCGCTAGCCTTTCTCGCCGCTGTGCTGGCCATGTTCGGGCTCTGCGATCTCTTT
GCGCTGTCTATGCCGGAGGAGCTCTCTTCGCTGTACTATTGGGGCGTTCAGGCGCCTCTTCGCTCTCTCTTCTCC
ATGCTCCTCGTCTTTTACTCGTACTTTTTTGGCCCCTCCTCTCCCGTCTACGGCGCCTCGGCCCCGCGATCCACC
TCTCGGCCTTCGGCCAACTCGACGTCCTACCGCTCCTCCACCTGGGGTGGCGATGGTCTAAAGAATCGCGTCTTC
TTCACCTTCATCTTTCTTGAGATGATAACATGGTTTTGGATCTGGGTCACGCTGCGGGAGGAGAGGCAAGGCGTT
GTCGAACGAATGCGGAAGCAGCACTCGCGGCCTAATAAGCAGGGGTGA
Gene >Ophio5|5857
ATGCCGCTCATCGGGTCCAAGACAATCATTACCTCCGTCTCCCTCTTCCACGTCACCATCGCCTTCTTCTTCCTC
ACGGATCCGCACACCATCCACGACCAGATTCTCGTCTATGTGCTGGGCGAGAGCATGGGCATGGTAATTCTCTTT
CACTTTCTTGGCCTCTTTAGTTTCTTTCGCGTTGTCGCTAACCCTTCCCCCCCCCCCAGCCCGTGGCCCGTGGCT
TCGACGCCCAGAGCCAACCGCTAGCCTTTCTCGCCGCTGTGCTGGCCATGTTCGGGCTCTGCGATCTCTTTGCGC
TGTCTATGCCGGAGGAGCTCTCTTCGCTGTACTATTGGGGCGTTCAGGGTCAGCTCAGCGTCTGCTTCCTCCCCC
TTTCCAAGAACTTGCCCTCTGACTGCTATACAGCGCCTCTTCGCTCTCTCTTCTCCATGCTCCTCGTCTTTTACT
CGTACTTTTTTGGCCCCTCCTCTCCCGTCTACGGCGCCTCGGCCCCGCGATCCACCTCTCGGCCTTCGGCCAACT
CGACGTCCTACCGCTCCTCCACCTGGGGTGGCGATGGTCTAAAGAATCGCGTCTTCTTCACCTTCATCTTTCTTG
AGATGATAACATGGTTTTGGATCTGGGTCACGCTGCGGGAGGAGAGGCAAGGCGTTGTCGAACGAATGCGGAAGC
AGCACTCGCGGCCTAATAAGCAGGGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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