Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5825
Gene name
Locationscaffold_49:16228..17329
Strand+
Gene length (bp)1101
Transcript length (bp)1101
Coding sequence length (bp)1098
Protein length (aa) 366

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04000 Sas10_Utp3 Sas10/Utp3/C1D family 4.5E-17 10 93

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q09713|YA36_SCHPO Uncharacterized protein C18B11.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18B11.06 PE=1 SV=1 40 298 5.0E-23
sp|P40079|LCP5_YEAST U3 small nucleolar ribonucleoprotein protein LCP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LCP5 PE=1 SV=1 1 298 2.0E-11
sp|Q28IV8|NGDN_XENTR Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1 6 282 3.0E-09
sp|Q5M985|NGDNB_XENLA Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-b PE=1 SV=1 4 282 2.0E-08
sp|Q4KLC4|NGDNA_XENLA Neuroguidin-A OS=Xenopus laevis GN=ngdn-a PE=1 SV=1 4 282 3.0E-08
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q09713|YA36_SCHPO Uncharacterized protein C18B11.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18B11.06 PE=1 SV=1 40 298 5.0E-23
sp|P40079|LCP5_YEAST U3 small nucleolar ribonucleoprotein protein LCP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LCP5 PE=1 SV=1 1 298 2.0E-11
sp|Q28IV8|NGDN_XENTR Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1 6 282 3.0E-09
sp|Q5M985|NGDNB_XENLA Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-b PE=1 SV=1 4 282 2.0E-08
sp|Q4KLC4|NGDNA_XENLA Neuroguidin-A OS=Xenopus laevis GN=ngdn-a PE=1 SV=1 4 282 3.0E-08
sp|Q2KII6|NGDN_BOVIN Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1 5 282 4.0E-08
sp|Q8NEJ9|NGDN_HUMAN Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1 5 131 3.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5825
MATLAALLGSLTQSLALAQEVTPAISAIENPKDGISLLDVKNELLLSYLQNLVFLILLKLRNSRAAGDGDGESHE
IDDSVRAKLVELRLYLEKGARPLEEKLRFSIERFLRTAEDAQREEHSKSRIPGPDDKSATSDSSGSESEEEDDSD
KDGPMRSGQAPAAPRVGALIDDVRTQSTGHDDGPSGIYRPPRRDRHLMETTRPREKADRRPNKSHTVEEFVHSEL
STAPMAEPSIGTTILQGGRKMKTAQERKDEAERREYEEMNLVRLPKLSKKERAKKNKEAGHGGGRMQFGGEEWRD
LGEGVDRIDRLTKRKGQAGGGGVRALLEKSRKRGLDATGGHVEIGERFQKKVKMLEAGRRSRGKKR
Coding >Ophio5|5825
ATGGCGACGTTGGCCGCTTTGCTGGGTTCCCTTACGCAGTCTCTTGCACTCGCGCAGGAGGTGACACCGGCTATC
TCTGCAATTGAGAATCCCAAAGATGGCATCTCCCTGCTCGACGTCAAGAACGAGCTGCTACTCTCCTACCTTCAA
AACCTCGTTTTCCTGATCCTGCTCAAGCTTCGTAACTCAAGGGCGGCGGGCGATGGCGACGGCGAGTCACATGAA
ATTGACGACTCGGTGCGTGCAAAGCTCGTTGAACTGCGTCTCTACCTCGAAAAAGGCGCGCGGCCACTGGAGGAG
AAGCTCAGGTTCTCCATCGAGCGATTTCTCAGGACGGCAGAGGATGCGCAACGTGAGGAACACAGCAAATCTCGC
ATACCAGGGCCCGACGACAAATCCGCGACAAGCGACAGCTCCGGCTCGGAGTCGGAAGAGGAAGATGACAGCGAC
AAGGACGGCCCGATGCGCTCCGGACAAGCGCCGGCCGCTCCCAGGGTCGGCGCCCTCATCGACGACGTGAGGACA
CAGTCTACGGGGCACGACGACGGCCCTTCCGGCATCTACCGCCCCCCAAGGCGAGATCGGCACCTAATGGAAACC
ACACGACCGCGCGAAAAGGCCGACCGCAGACCCAATAAGTCACACACAGTGGAGGAGTTTGTCCATTCAGAACTC
TCCACCGCACCTATGGCGGAGCCCAGCATCGGCACAACAATCCTCCAAGGCGGACGCAAGATGAAGACGGCACAG
GAGCGCAAGGACGAGGCTGAGCGACGCGAGTATGAAGAGATGAATCTAGTCCGGCTGCCGAAGCTTAGCAAGAAG
GAGCGGGCCAAGAAGAACAAGGAGGCTGGGCACGGCGGCGGGCGTATGCAGTTTGGCGGCGAGGAGTGGAGGGAT
CTGGGCGAGGGCGTCGACCGCATCGACCGGCTGACCAAGCGCAAGGGCCAGGCGGGCGGCGGCGGCGTGAGAGCC
CTGCTGGAGAAGAGCCGGAAGCGAGGGCTCGACGCGACGGGCGGCCACGTCGAGATTGGCGAGCGCTTTCAGAAG
AAGGTCAAGATGCTGGAGGCTGGGCGGCGGAGCAGGGGGAAGAAGAGG
Transcript >Ophio5|5825
ATGGCGACGTTGGCCGCTTTGCTGGGTTCCCTTACGCAGTCTCTTGCACTCGCGCAGGAGGTGACACCGGCTATC
TCTGCAATTGAGAATCCCAAAGATGGCATCTCCCTGCTCGACGTCAAGAACGAGCTGCTACTCTCCTACCTTCAA
AACCTCGTTTTCCTGATCCTGCTCAAGCTTCGTAACTCAAGGGCGGCGGGCGATGGCGACGGCGAGTCACATGAA
ATTGACGACTCGGTGCGTGCAAAGCTCGTTGAACTGCGTCTCTACCTCGAAAAAGGCGCGCGGCCACTGGAGGAG
AAGCTCAGGTTCTCCATCGAGCGATTTCTCAGGACGGCAGAGGATGCGCAACGTGAGGAACACAGCAAATCTCGC
ATACCAGGGCCCGACGACAAATCCGCGACAAGCGACAGCTCCGGCTCGGAGTCGGAAGAGGAAGATGACAGCGAC
AAGGACGGCCCGATGCGCTCCGGACAAGCGCCGGCCGCTCCCAGGGTCGGCGCCCTCATCGACGACGTGAGGACA
CAGTCTACGGGGCACGACGACGGCCCTTCCGGCATCTACCGCCCCCCAAGGCGAGATCGGCACCTAATGGAAACC
ACACGACCGCGCGAAAAGGCCGACCGCAGACCCAATAAGTCACACACAGTGGAGGAGTTTGTCCATTCAGAACTC
TCCACCGCACCTATGGCGGAGCCCAGCATCGGCACAACAATCCTCCAAGGCGGACGCAAGATGAAGACGGCACAG
GAGCGCAAGGACGAGGCTGAGCGACGCGAGTATGAAGAGATGAATCTAGTCCGGCTGCCGAAGCTTAGCAAGAAG
GAGCGGGCCAAGAAGAACAAGGAGGCTGGGCACGGCGGCGGGCGTATGCAGTTTGGCGGCGAGGAGTGGAGGGAT
CTGGGCGAGGGCGTCGACCGCATCGACCGGCTGACCAAGCGCAAGGGCCAGGCGGGCGGCGGCGGCGTGAGAGCC
CTGCTGGAGAAGAGCCGGAAGCGAGGGCTCGACGCGACGGGCGGCCACGTCGAGATTGGCGAGCGCTTTCAGAAG
AAGGTCAAGATGCTGGAGGCTGGGCGGCGGAGCAGGGGGAAGAAGAGGTAG
Gene >Ophio5|5825
ATGGCGACGTTGGCCGCTTTGCTGGGTTCCCTTACGCAGTCTCTTGCACTCGCGCAGGAGGTGACACCGGCTATC
TCTGCAATTGAGAATCCCAAAGATGGCATCTCCCTGCTCGACGTCAAGAACGAGCTGCTACTCTCCTACCTTCAA
AACCTCGTTTTCCTGATCCTGCTCAAGCTTCGTAACTCAAGGGCGGCGGGCGATGGCGACGGCGAGTCACATGAA
ATTGACGACTCGGTGCGTGCAAAGCTCGTTGAACTGCGTCTCTACCTCGAAAAAGGCGCGCGGCCACTGGAGGAG
AAGCTCAGGTTCTCCATCGAGCGATTTCTCAGGACGGCAGAGGATGCGCAACGTGAGGAACACAGCAAATCTCGC
ATACCAGGGCCCGACGACAAATCCGCGACAAGCGACAGCTCCGGCTCGGAGTCGGAAGAGGAAGATGACAGCGAC
AAGGACGGCCCGATGCGCTCCGGACAAGCGCCGGCCGCTCCCAGGGTCGGCGCCCTCATCGACGACGTGAGGACA
CAGTCTACGGGGCACGACGACGGCCCTTCCGGCATCTACCGCCCCCCAAGGCGAGATCGGCACCTAATGGAAACC
ACACGACCGCGCGAAAAGGCCGACCGCAGACCCAATAAGTCACACACAGTGGAGGAGTTTGTCCATTCAGAACTC
TCCACCGCACCTATGGCGGAGCCCAGCATCGGCACAACAATCCTCCAAGGCGGACGCAAGATGAAGACGGCACAG
GAGCGCAAGGACGAGGCTGAGCGACGCGAGTATGAAGAGATGAATCTAGTCCGGCTGCCGAAGCTTAGCAAGAAG
GAGCGGGCCAAGAAGAACAAGGAGGCTGGGCACGGCGGCGGGCGTATGCAGTTTGGCGGCGAGGAGTGGAGGGAT
CTGGGCGAGGGCGTCGACCGCATCGACCGGCTGACCAAGCGCAAGGGCCAGGCGGGCGGCGGCGGCGTGAGAGCC
CTGCTGGAGAAGAGCCGGAAGCGAGGGCTCGACGCGACGGGCGGCCACGTCGAGATTGGCGAGCGCTTTCAGAAG
AAGGTCAAGATGCTGGAGGCTGGGCGGCGGAGCAGGGGGAAGAAGAGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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