Protein ID | Ophio5|5823 |
Gene name | |
Location | scaffold_49:13996..15976 |
Strand | - |
Gene length (bp) | 1980 |
Transcript length (bp) | 1788 |
Coding sequence length (bp) | 1785 |
Protein length (aa) | 595 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF02990 | EMP70 | Endomembrane protein 70 | 1.3E-171 | 99 | 551 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9LIC2|TMN7_ARATH | Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1 | 19 | 595 | 7.0E-153 |
sp|Q9C720|TMN6_ARATH | Transmembrane 9 superfamily member 6 OS=Arabidopsis thaliana GN=TMN6 PE=2 SV=1 | 19 | 595 | 1.0E-152 |
sp|P32802|TMN1_YEAST | Transmembrane 9 superfamily member 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMP70 PE=1 SV=2 | 18 | 595 | 7.0E-152 |
sp|Q99805|TM9S2_HUMAN | Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1 | 13 | 595 | 6.0E-148 |
sp|Q5R8Y6|TM9S2_PONAB | Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1 | 13 | 595 | 9.0E-147 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9LIC2|TMN7_ARATH | Transmembrane 9 superfamily member 7 OS=Arabidopsis thaliana GN=TMN7 PE=2 SV=1 | 19 | 595 | 7.0E-153 |
sp|Q9C720|TMN6_ARATH | Transmembrane 9 superfamily member 6 OS=Arabidopsis thaliana GN=TMN6 PE=2 SV=1 | 19 | 595 | 1.0E-152 |
sp|P32802|TMN1_YEAST | Transmembrane 9 superfamily member 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMP70 PE=1 SV=2 | 18 | 595 | 7.0E-152 |
sp|Q99805|TM9S2_HUMAN | Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1 | 13 | 595 | 6.0E-148 |
sp|Q5R8Y6|TM9S2_PONAB | Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1 | 13 | 595 | 9.0E-147 |
sp|Q66HG5|TM9S2_RAT | Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1 | 13 | 595 | 2.0E-146 |
sp|P58021|TM9S2_MOUSE | Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=1 SV=1 | 13 | 595 | 3.0E-146 |
sp|Q04562|TMN2_YEAST | Transmembrane 9 superfamily member 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMN2 PE=1 SV=1 | 16 | 595 | 1.0E-144 |
sp|Q8RWW1|TMN10_ARATH | Transmembrane 9 superfamily member 10 OS=Arabidopsis thaliana GN=TMN10 PE=2 SV=1 | 19 | 595 | 2.0E-144 |
sp|Q9C5N2|TMN9_ARATH | Transmembrane 9 superfamily member 9 OS=Arabidopsis thaliana GN=TMN9 PE=2 SV=1 | 10 | 595 | 7.0E-140 |
sp|F4KIB2|TMN8_ARATH | Transmembrane 9 superfamily member 8 OS=Arabidopsis thaliana GN=TMN8 PE=2 SV=1 | 17 | 595 | 3.0E-138 |
sp|A5D7E2|TM9S4_BOVIN | Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2 | 19 | 595 | 3.0E-133 |
sp|Q92544|TM9S4_HUMAN | Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2 | 127 | 595 | 5.0E-132 |
sp|Q5RDY2|TM9S4_PONAB | Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1 | 127 | 595 | 5.0E-132 |
sp|Q8BH24|TM9S4_MOUSE | Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=1 SV=1 | 10 | 595 | 6.0E-132 |
sp|Q4KLL4|TM9S4_RAT | Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1 | 10 | 595 | 1.0E-131 |
sp|Q55FP0|PHG1A_DICDI | Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1 | 20 | 595 | 2.0E-131 |
sp|Q9Y819|YON8_SCHPO | Transmembrane 9 superfamily protein C1105.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1105.08 PE=3 SV=1 | 15 | 595 | 2.0E-131 |
sp|Q9FYQ8|TMN11_ARATH | Transmembrane 9 superfamily member 11 OS=Arabidopsis thaliana GN=TMN11 PE=2 SV=1 | 163 | 595 | 1.0E-101 |
sp|Q9ZPS7|TMN3_ARATH | Transmembrane 9 superfamily member 3 OS=Arabidopsis thaliana GN=TMN3 PE=2 SV=1 | 30 | 595 | 7.0E-94 |
sp|F4JRE0|TMN12_ARATH | Transmembrane 9 superfamily member 12 OS=Arabidopsis thaliana GN=TMN12 PE=2 SV=1 | 152 | 595 | 2.0E-93 |
sp|Q9FHT4|TMN4_ARATH | Transmembrane 9 superfamily member 4 OS=Arabidopsis thaliana GN=TMN4 PE=2 SV=1 | 14 | 595 | 2.0E-91 |
sp|Q940S0|TMN2_ARATH | Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana GN=TMN2 PE=2 SV=1 | 1 | 595 | 6.0E-90 |
sp|Q9HD45|TM9S3_HUMAN | Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2 | 186 | 595 | 1.0E-86 |
sp|Q9ET30|TM9S3_MOUSE | Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1 | 186 | 595 | 1.0E-86 |
sp|Q940G0|TMN1_ARATH | Transmembrane 9 superfamily member 1 OS=Arabidopsis thaliana GN=TMN1 PE=1 SV=1 | 29 | 595 | 1.0E-80 |
sp|Q9DBU0|TM9S1_MOUSE | Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2 | 28 | 595 | 5.0E-77 |
sp|Q5R8F1|TM9S1_PONAB | Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1 | 23 | 595 | 1.0E-76 |
sp|O15321|TM9S1_HUMAN | Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2 | 23 | 595 | 6.0E-76 |
sp|A4IFE9|TM9S1_BOVIN | Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1 | 23 | 595 | 7.0E-76 |
sp|Q54ZW0|PHG1B_DICDI | Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1 | 30 | 595 | 1.0E-75 |
sp|Q66HF2|TM9S1_RAT | Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1 | 28 | 595 | 5.0E-69 |
sp|F4HW17|TMN5_ARATH | Transmembrane 9 superfamily member 5 OS=Arabidopsis thaliana GN=TMN5 PE=2 SV=1 | 26 | 595 | 1.0E-64 |
sp|Q7YTA6|PHG1C_DICDI | Putative phagocytic receptor 1c OS=Dictyostelium discoideum GN=phg1c PE=2 SV=1 | 133 | 595 | 3.0E-48 |
sp|P40071|TMN3_YEAST | Transmembrane 9 superfamily member 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMN3 PE=1 SV=1 | 70 | 589 | 4.0E-36 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016021 | integral component of membrane | Yes |
GO:0110165 | cellular anatomical entity | No |
GO:0005575 | cellular_component | No |
GO:0031224 | intrinsic component of membrane | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole|Golgi apparatus | Signal peptide|Transmembrane domain | 0.136 | 0.1524 | 0.0126 | 0.2565 | 0.2026 | 0.0223 | 0.4689 | 0.7817 | 0.7745 | 0.0168 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 19 | 0.999616 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 221 | 243 | 22 |
2 | 300 | 322 | 22 |
3 | 329 | 351 | 22 |
4 | 366 | 388 | 22 |
5 | 395 | 417 | 22 |
6 | 458 | 480 | 22 |
7 | 485 | 507 | 22 |
8 | 522 | 544 | 22 |
9 | 557 | 579 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2807 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|5823 MHLRTALAALLAAPQMASAFYLPGVAPTSYKPGDSVPLQVNSIRPVAAPQDNRLHSVVSYDYYHPDFHFCEPPGG PQMRRASLYAKPRILSTARAGQQIKDDLTGTTFYSPGFQLGGFFLSSDEEEEELSFNNHYEIWIEYHPVNGRENE LRVVGAVVQPSSKMYTGEVDCADGHPPVSLTFGDEDQQVQFSYSVYWRKSETAWATRWDKYLHVFDPKIHWFWLI DTAVIVVILVLTVMSVLVRTLKKDIARYNRLDQISLDDLSGTSVVEEGVQEDSGWKLIHGDVFRTPPHPLLLSVL LGNGAQLFVMTGCTIVFALLGFLSPSNRGSLGTIMIILYTLLGSVGGYASARTYKALLGEQWKLNIALTPLLVPG IVFGAFFLLDLFLWAKRSSGAVPFTTMLVIIAIWFVISIPLSFVGSWMGFRSPQLEAPVRTNQIPRQIPPATTYL QPIPSMLIVGLLPFGAIFVELYFIMSSIWFSRIYYMFGFLFLCYGLMIVVCAAVTILMTYFLLCAENYNWQWRSF LAAGMSGGYIFLNCLLYLLTKVKLGGLAGVVLYVGYSALISFLFFILAGSIGYFASWWFVRKIYSSIKID |
Coding | >Ophio5|5823 ATGCACCTCCGAACCGCCCTCGCGGCGTTGCTGGCGGCTCCGCAGATGGCCTCGGCCTTTTATCTGCCAGGCGTT GCGCCGACGTCTTACAAGCCCGGCGACAGCGTCCCCCTTCAGGTCAACAGCATCCGGCCCGTCGCCGCGCCCCAA GACAACCGTCTTCACTCGGTCGTCTCTTACGACTACTATCACCCGGACTTTCACTTCTGCGAACCCCCCGGCGGC CCGCAAATGAGACGTGCAAGCCTTTATGCAAAGCCTCGTATCCTGTCGACAGCAAGAGCTGGCCAGCAGATCAAA GACGACTTGACGGGCACGACCTTTTACAGCCCTGGCTTCCAACTCGGCGGCTTCTTCCTGTCGTCTGATGAGGAG GAGGAGGAGCTCTCGTTCAACAACCACTACGAGATATGGATCGAATATCACCCGGTAAACGGCCGGGAGAACGAG CTCCGTGTCGTCGGCGCCGTCGTTCAACCCAGCTCCAAGATGTACACGGGCGAGGTCGACTGCGCCGACGGTCAT CCGCCCGTCTCCCTCACCTTTGGCGACGAGGACCAGCAGGTTCAGTTCAGCTACAGCGTCTACTGGCGCAAGTCA GAAACGGCCTGGGCCACACGCTGGGACAAATATCTCCACGTCTTCGACCCCAAGATCCATTGGTTCTGGCTCATC GACACGGCCGTCATTGTTGTCATCCTCGTCCTCACTGTCATGTCCGTGCTCGTAAGGACGCTCAAAAAGGACATT GCGCGGTACAACCGGTTGGACCAGATTAGTCTCGACGACCTGAGCGGCACTTCGGTGGTTGAGGAGGGCGTCCAG GAAGACTCGGGCTGGAAGCTGATACACGGCGACGTCTTCCGCACACCGCCCCACCCCTTACTGCTATCAGTGCTA CTCGGAAATGGCGCCCAGCTGTTCGTTATGACAGGCTGCACCATCGTCTTCGCCCTTCTTGGCTTCCTTTCCCCG TCGAACCGCGGATCTCTGGGCACCATCATGATCATCCTCTACACCCTTCTCGGCTCCGTCGGCGGCTACGCCTCG GCCAGGACCTACAAGGCCTTGCTCGGCGAGCAGTGGAAGCTCAACATTGCCCTGACGCCACTGCTGGTGCCTGGC ATCGTCTTTGGCGCCTTCTTCCTCCTCGACCTCTTCCTATGGGCCAAGCGATCCTCGGGCGCGGTGCCCTTTACA ACCATGCTCGTCATCATTGCCATCTGGTTCGTCATATCCATACCGCTATCCTTTGTCGGCTCGTGGATGGGTTTT CGGAGCCCGCAACTTGAGGCGCCGGTGCGCACCAACCAGATCCCTCGACAGATACCGCCGGCCACGACATACCTT CAGCCGATTCCCAGCATGCTCATCGTCGGCCTCCTGCCCTTTGGCGCCATCTTTGTCGAGCTATACTTCATCATG AGCTCTATCTGGTTCAGTCGCATCTATTACATGTTTGGTTTCCTCTTCCTTTGCTATGGCCTGATGATTGTCGTC TGCGCCGCCGTTACTATCCTCATGACCTACTTTCTCCTGTGCGCCGAAAACTATAACTGGCAATGGAGGTCGTTC CTCGCCGCCGGCATGAGCGGCGGCTACATCTTTCTCAACTGCCTCCTCTACCTCTTGACCAAGGTGAAGCTCGGC GGGCTCGCAGGTGTCGTGCTTTACGTCGGCTACAGCGCCCTCATCTCCTTTCTGTTCTTTATTCTGGCCGGCTCC ATTGGCTACTTTGCCAGCTGGTGGTTCGTGAGGAAGATTTACTCCTCCATCAAAATTGAC |
Transcript | >Ophio5|5823 ATGCACCTCCGAACCGCCCTCGCGGCGTTGCTGGCGGCTCCGCAGATGGCCTCGGCCTTTTATCTGCCAGGCGTT GCGCCGACGTCTTACAAGCCCGGCGACAGCGTCCCCCTTCAGGTCAACAGCATCCGGCCCGTCGCCGCGCCCCAA GACAACCGTCTTCACTCGGTCGTCTCTTACGACTACTATCACCCGGACTTTCACTTCTGCGAACCCCCCGGCGGC CCGCAAATGAGACGTGCAAGCCTTTATGCAAAGCCTCGTATCCTGTCGACAGCAAGAGCTGGCCAGCAGATCAAA GACGACTTGACGGGCACGACCTTTTACAGCCCTGGCTTCCAACTCGGCGGCTTCTTCCTGTCGTCTGATGAGGAG GAGGAGGAGCTCTCGTTCAACAACCACTACGAGATATGGATCGAATATCACCCGGTAAACGGCCGGGAGAACGAG CTCCGTGTCGTCGGCGCCGTCGTTCAACCCAGCTCCAAGATGTACACGGGCGAGGTCGACTGCGCCGACGGTCAT CCGCCCGTCTCCCTCACCTTTGGCGACGAGGACCAGCAGGTTCAGTTCAGCTACAGCGTCTACTGGCGCAAGTCA GAAACGGCCTGGGCCACACGCTGGGACAAATATCTCCACGTCTTCGACCCCAAGATCCATTGGTTCTGGCTCATC GACACGGCCGTCATTGTTGTCATCCTCGTCCTCACTGTCATGTCCGTGCTCGTAAGGACGCTCAAAAAGGACATT GCGCGGTACAACCGGTTGGACCAGATTAGTCTCGACGACCTGAGCGGCACTTCGGTGGTTGAGGAGGGCGTCCAG GAAGACTCGGGCTGGAAGCTGATACACGGCGACGTCTTCCGCACACCGCCCCACCCCTTACTGCTATCAGTGCTA CTCGGAAATGGCGCCCAGCTGTTCGTTATGACAGGCTGCACCATCGTCTTCGCCCTTCTTGGCTTCCTTTCCCCG TCGAACCGCGGATCTCTGGGCACCATCATGATCATCCTCTACACCCTTCTCGGCTCCGTCGGCGGCTACGCCTCG GCCAGGACCTACAAGGCCTTGCTCGGCGAGCAGTGGAAGCTCAACATTGCCCTGACGCCACTGCTGGTGCCTGGC ATCGTCTTTGGCGCCTTCTTCCTCCTCGACCTCTTCCTATGGGCCAAGCGATCCTCGGGCGCGGTGCCCTTTACA ACCATGCTCGTCATCATTGCCATCTGGTTCGTCATATCCATACCGCTATCCTTTGTCGGCTCGTGGATGGGTTTT CGGAGCCCGCAACTTGAGGCGCCGGTGCGCACCAACCAGATCCCTCGACAGATACCGCCGGCCACGACATACCTT CAGCCGATTCCCAGCATGCTCATCGTCGGCCTCCTGCCCTTTGGCGCCATCTTTGTCGAGCTATACTTCATCATG AGCTCTATCTGGTTCAGTCGCATCTATTACATGTTTGGTTTCCTCTTCCTTTGCTATGGCCTGATGATTGTCGTC TGCGCCGCCGTTACTATCCTCATGACCTACTTTCTCCTGTGCGCCGAAAACTATAACTGGCAATGGAGGTCGTTC CTCGCCGCCGGCATGAGCGGCGGCTACATCTTTCTCAACTGCCTCCTCTACCTCTTGACCAAGGTGAAGCTCGGC GGGCTCGCAGGTGTCGTGCTTTACGTCGGCTACAGCGCCCTCATCTCCTTTCTGTTCTTTATTCTGGCCGGCTCC ATTGGCTACTTTGCCAGCTGGTGGTTCGTGAGGAAGATTTACTCCTCCATCAAAATTGACTAG |
Gene | >Ophio5|5823 ATGCACCTCCGAACCGCCCTCGCGGCGTTGCTGGCGGCTCCGCAGATGGCCTCGGCCTTTTATCTGCCAGGCGTT GCGCCGACGTCTTACAAGCCCGGCGACAGCGTCCCCCTTCAGGTCAACAGCATCCGGCCCGTCGCCGCGCCCCAA GACAACCGTCTTCACTCGGTCGTCTCTTACGACTACTATCACCCGGACTTTCACTTCTGCGAACCCCCCGGCGGC CCGCAGTACGTGCCCGAGAGCCTGGGGAGCATCCTCTCGGGCGACAGGCTGATGACGTCGCCCTTTGAGCTGCTC ATGGCCAAGAATGAGACGTGCAAGCCTTTATGCAAAGCCTCGTATCCTGTCGACAGCAAGAGGTTCGTCAACGAG CGCATAGAGGAGGCTTACAGCCTCAACTGGCTCGTTGATGGCCTACCAGCTGGCCAGCAGATCAAAGACGACTTG ACGGGCACGACCTTTTACAGCCCTGGCTTCCAACTCGGCGGCTTCTTCCTGTCGTCTGATGAGGAGGAGGAGGAG CTCTCGTTCAACAACCACTACGAGATATGGATCGAATATCACCCGGTAAACGGCCGGGAGAACGAGCTCCGTGTC GTCGGCGCCGTCGTTCAACCCAGCTCCAAGATGTACACGGGCGAGGTCGACTGCGCCGACGGTCATCCGCCCGTC TCCCTCACCTTTGGCGACGAGGACCAGCAGGTTCAGTTCAGCTACAGCGTCTACTGGCGCAAGTCAGAAACGGCC TGGGCCACACGCTGGGACAAATATCTCCACGTCTTCGACCCCAAGATCCATTGGTTCTGGCTCATCGACACGGCC GTCATTGTTGTCATCCTCGTCCTCACTGTCATGTCCGTGCTCGTAAGGACGCTCAAAAAGGACATTGCGCGGTAC AACCGGTTGGACCAGATTAGTCTCGACGACCTGAGCGGCACTTCGGTGGTTGAGGAGGGCGTCCAGGAAGACTCG GGCTGGAAGCTGATACACGGCGACGTCTTCCGCACACCGCCCCACCCCTTACTGCTATCAGTGCTACTCGGAAAT GGCGCCCAGCTGTTCGTTATGACAGGCTGCACCATCGTCTTCGCCCTTCTTGGCTTCCTTTCCCCGTCGAACCGC GGATCTCTGGGCACCATCATGATCATCCTCTACACCCTTCTCGGCTCCGTCGGCGGCTACGCCTCGGCCAGGACC TACAAGGCCTTGCTCGGCGAGCAGTGGAAGCTCAACATTGCCCTGACGCCACTGCTGGTGCCTGGCATCGTCTTT GGCGCCTTCTTCCTCCTCGACCTCTTCCTATGGGCCAAGCGATCCTCGGGCGCGGTGCCCTTTACAACCATGCTC GTCATCATTGCCATCTGGTTCGTCATATCCATACCGCTATCCTTTGTCGGCTCGTGGATGGGTTTTCGGAGCCCG CAACTTGAGGCGCCGGTGCGCACCAACCAGATCCCTCGACAGATACCGCCGGCCACGACATACCTTCAGCCGATT CCCAGCATGCTCATCGTCGGCCTCCTGCCCTTTGGCGCCATCTTTGTCGAGCTATACTTCATCATGAGCTCTATC TGGTTCAGTCGCATCTATTACATGTTTGGTTTCCTCTTCCTTTGCTATGGCCTGATGATTGTCGTCTGCGCCGCC GTTACTATCCTCATGACCTACTTTCTCCTGTGCGCCGAAAACTATAACTGGCAATGGAGGTCGTTCCTCGCCGCC GGCATGAGCGGCGGCTACATCTTTCTCAACTGCCTCCTCTACCTCTTGACCAAGGTGAAGCTCGGCGGGCTCGCA GGTGTCGTGCTTTACGTCGGCTACAGCGCCCTCATCTCCTTTCTGTTCTTTATTCTGGCCGGTATGCCTCTTCCA TGATGGTCTCACCCGACCGCATCTAACGTGAATTCAGGCTCCATTGGCTACTTTGCCAGCTGGTGGTTCGTGAGG AAGATTTACTCCTCCATCAAAATTGACTAG |