© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5821 |
| Gene name | |
| Location | scaffold_49:11580..12246 |
| Strand | - |
| Gene length (bp) | 666 |
| Transcript length (bp) | 267 |
| Coding sequence length (bp) | 264 |
| Protein length (aa) | 88 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09796 | QCR10 | Ubiquinol-cytochrome-c reductase complex subunit (QCR10) | 1.4E-23 | 26 | 88 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005750 | mitochondrial respiratory chain complex III | Yes |
| GO:0006122 | mitochondrial electron transport, ubiquinol to cytochrome c | Yes |
| GO:1990204 | oxidoreductase complex | No |
| GO:0008150 | biological_process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0015980 | energy derivation by oxidation of organic compounds | No |
| GO:0098798 | mitochondrial protein-containing complex | No |
| GO:0045333 | cellular respiration | No |
| GO:0022904 | respiratory electron transport chain | No |
| GO:1902494 | catalytic complex | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0009060 | aerobic respiration | No |
| GO:0098796 | membrane protein complex | No |
| GO:0009987 | cellular process | No |
| GO:0019646 | aerobic electron transport chain | No |
| GO:0005575 | cellular_component | No |
| GO:0098803 | respiratory chain complex | No |
| GO:0022900 | electron transport chain | No |
| GO:0098800 | inner mitochondrial membrane protein complex | No |
| GO:0006091 | generation of precursor metabolites and energy | No |
| GO:0045275 | respiratory chain complex III | No |
| GO:1902495 | transmembrane transporter complex | No |
| GO:0070069 | cytochrome complex | No |
| GO:1990351 | transporter complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 36 | 58 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 270.82 | 125.20 | 416.44 |
| CcL | In ants, during behavior modification | 319.46 | 152.43 | 486.48 |
| CcD | In ants, recently dead | 451.10 | 233.84 | 668.36 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.570292 | no |
| SC16a | CcD | 0.035742 | yes |
| CcL | CcD | 0.179108 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5821 MESPISRPPSFKSAYGPKYQHQPNIRGWNRTAILRLGVRAGLYGGAAGVAALLFTSGIPRIRVDIMERIPFVGRY FVKEPVNPADNPF |
| Coding | >Ophio5|5821 ATGGAATCTCCCATCAGCCGCCCTCCCAGCTTCAAGAGCGCGTACGGGCCAAAGTATCAGCATCAGCCCAACATC CGCGGATGGAACAGGACTGCTATCCTGAGATTAGGCGTCAGAGCTGGTCTGTACGGTGGCGCGGCAGGCGTTGCT GCCTTGCTCTTCACGTCCGGCATCCCCCGCATTCGCGTCGACATCATGGAGCGGATCCCCTTTGTCGGCCGCTAT TTCGTCAAGGAGCCGGTTAACCCTGCGGACAATCCTTTC |
| Transcript | >Ophio5|5821 ATGGAATCTCCCATCAGCCGCCCTCCCAGCTTCAAGAGCGCGTACGGGCCAAAGTATCAGCATCAGCCCAACATC CGCGGATGGAACAGGACTGCTATCCTGAGATTAGGCGTCAGAGCTGGTCTGTACGGTGGCGCGGCAGGCGTTGCT GCCTTGCTCTTCACGTCCGGCATCCCCCGCATTCGCGTCGACATCATGGAGCGGATCCCCTTTGTCGGCCGCTAT TTCGTCAAGGAGCCGGTTAACCCTGCGGACAATCCTTTCTAA |
| Gene | >Ophio5|5821 ATGGAATCTCCCGTATGTCATTTGAAGCTGTCCCCGATCAATCGAAGGCCTACGAACTGAATGCGTCGCAGATCA GCCGCCCTCCCAGCTTCAAGAGCGCGTACGGGCCAAAGTACGTGAGCAACAGCGCCTCCAACACCCCTTCCCCGT TACTAGCTGCGTCGACTCCCTCAACGCCTCGATCGACCACATTTGAATCACTCGCTTGAGTCCAATGGCTCTGAC GGCTCGCCTCGCTAGGTATCAGCATCAGCCCAACATCCGCGGATGGAACAGGACTGCTATCCTGAGATTGTGAGT AGGCTTCTACGTCGTTTGAGCGGAGTCCATACGGATGCTGCAAAACACATATCACGGGCTTGGATAGTTTGGGGG TGCCACTCGCTAACCTGTCGGCATCAGAGGCGTCAGAGCTGGTCTGTACGGTGGCGCGGCAGGCGTTGCTGCCTT GCTCTTCACGTCCGGCATCCCCCGCATTCGCGTCGACATCATGGAGGTGGGTTGTCTGGCCCAAGCGAAGACGGC CACGCAAGCTGATTCGAGGCGTAGCGGATCCCCTTTGTCGGCCGCTATTTCGTCAAGGAGCCGGTTAACCCTGCG GACAATGTGAGCTTCACCAGGCTCGAGGTCTGTTTGTTTTTACTGATGAGTAGACAGCCTTTCTAA |