Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5813
Gene name
Locationscaffold_488:10573..11718
Strand+
Gene length (bp)1145
Transcript length (bp)966
Coding sequence length (bp)963
Protein length (aa) 321

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03388 Lectin_leg-like Legume-like lectin family 8.1E-65 30 250
PF18483 Bact_lectin Bacterial lectin 9.5E-08 48 242

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O94401|YQF8_SCHPO L-type lectin-like domain-containing protein C126.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.08c PE=3 SV=1 31 275 7.0E-54
sp|P59481|LMA2L_MOUSE VIP36-like protein OS=Mus musculus GN=Lman2l PE=1 SV=1 32 252 8.0E-50
sp|Q2HJD1|LMA2L_BOVIN VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 32 252 2.0E-49
sp|Q5RCF0|LMA2L_PONAB VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 32 252 3.0E-49
sp|Q9H0V9|LMA2L_HUMAN VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 32 252 3.0E-49
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Swissprot ID Swissprot Description Start End E-value
sp|O94401|YQF8_SCHPO L-type lectin-like domain-containing protein C126.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.08c PE=3 SV=1 31 275 7.0E-54
sp|P59481|LMA2L_MOUSE VIP36-like protein OS=Mus musculus GN=Lman2l PE=1 SV=1 32 252 8.0E-50
sp|Q2HJD1|LMA2L_BOVIN VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 32 252 2.0E-49
sp|Q5RCF0|LMA2L_PONAB VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 32 252 3.0E-49
sp|Q9H0V9|LMA2L_HUMAN VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 32 252 3.0E-49
sp|P49256|LMAN2_CANLF Vesicular integral-membrane protein VIP36 OS=Canis lupus familiaris GN=LMAN2 PE=1 SV=1 30 252 2.0E-46
sp|Q12907|LMAN2_HUMAN Vesicular integral-membrane protein VIP36 OS=Homo sapiens GN=LMAN2 PE=1 SV=1 30 260 8.0E-46
sp|Q9DBH5|LMAN2_MOUSE Vesicular integral-membrane protein VIP36 OS=Mus musculus GN=Lman2 PE=1 SV=2 30 247 1.0E-45
sp|Q9D0F3|LMAN1_MOUSE Protein ERGIC-53 OS=Mus musculus GN=Lman1 PE=1 SV=1 53 246 2.0E-28
sp|Q62902|LMAN1_RAT Protein ERGIC-53 OS=Rattus norvegicus GN=Lman1 PE=1 SV=1 53 246 2.0E-28
sp|P49257|LMAN1_HUMAN Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2 2 246 2.0E-27
sp|Q9TU32|LMAN1_CHLAE Protein ERGIC-53 OS=Chlorocebus aethiops GN=LMAN1 PE=2 SV=1 53 246 2.0E-27
sp|Q8VCD3|LMA1L_MOUSE Protein ERGIC-53-like OS=Mus musculus GN=Lman1l PE=2 SV=2 54 262 1.0E-18
sp|Q9HAT1|LMA1L_HUMAN Protein ERGIC-53-like OS=Homo sapiens GN=LMAN1L PE=2 SV=2 54 252 3.0E-18
sp|Q5FB95|LMA1L_RAT Protein ERGIC-53-like OS=Rattus norvegicus GN=Lman1l PE=1 SV=1 64 258 7.0E-18
sp|P36137|UIP5_YEAST Protein UIP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UIP5 PE=1 SV=1 35 253 6.0E-10
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GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

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SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 288 310 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5813
MRLPPVSAVLLAALAWTVRAEDREDLKSIMLRTHSLQQPYLDSELQSRWFDFGGDTIVRTDSYIRLTSDRGSQSG
WLFSRVPLTATNWEIEVEFSISGKHNLYGDGLAMWVTKQRGQPGPVFGSADRFEGLGIFIDTYKNNRPGVVFPYV
MAMVGDGHASYDKNNDGKETELAGCSARGLRSATMPTKLRLTYIQDKQLRLELQYKVEGEWELCFETTQPPTLPN
VAYLGFSAETGELSDNHDIISVAAKNLYNTPGAASGPGASASKGKGQGAGASHARPPRQGGSWTWFLIKAMLMLA
VVAGGYGGWTAYRAKSRSHRF
Coding >Ophio5|5813
ATGAGGCTGCCCCCCGTGTCGGCAGTGCTCCTCGCGGCCCTGGCCTGGACAGTCCGGGCCGAGGACCGCGAGGAC
CTCAAGAGCATCATGCTGCGGACGCACAGTTTGCAACAGCCCTATCTCGACTCCGAGCTACAGAGCCGATGGTTT
GACTTTGGCGGCGACACCATTGTTCGAACGGACTCCTACATCCGGCTCACGTCGGATCGCGGCTCACAGTCCGGC
TGGTTGTTCTCGCGCGTGCCGCTGACGGCGACCAACTGGGAGATCGAAGTCGAGTTCAGCATCTCGGGCAAGCAC
AACTTATACGGCGACGGGCTGGCCATGTGGGTGACGAAACAGCGCGGCCAGCCGGGTCCCGTCTTCGGCTCGGCC
GACCGGTTCGAAGGCCTGGGCATCTTTATCGACACGTACAAGAATAACCGACCGGGTGTGGTGTTCCCCTACGTC
ATGGCCATGGTCGGCGACGGGCACGCCTCTTACGACAAGAACAACGACGGCAAGGAGACGGAGCTGGCGGGCTGC
TCGGCCCGCGGCCTGAGGTCGGCCACGATGCCCACCAAGCTGCGCCTGACGTACATTCAGGACAAGCAGCTACGG
CTCGAGCTACAGTACAAAGTCGAGGGCGAATGGGAGCTGTGCTTCGAGACGACGCAGCCGCCGACGCTGCCCAAC
GTGGCCTACCTCGGCTTCAGCGCCGAGACGGGCGAGCTGAGCGATAACCACGACATCATCTCCGTCGCCGCCAAG
AACCTCTACAACACCCCCGGCGCCGCCAGCGGTCCTGGCGCCTCGGCCTCCAAGGGCAAGGGCCAGGGAGCCGGC
GCCTCGCACGCCCGTCCGCCGCGCCAAGGCGGTAGCTGGACTTGGTTCCTCATCAAGGCGATGCTGATGCTGGCC
GTCGTCGCCGGCGGCTACGGAGGCTGGACGGCCTACCGGGCCAAGAGCAGAAGCCACCGGTTT
Transcript >Ophio5|5813
ATGAGGCTGCCCCCCGTGTCGGCAGTGCTCCTCGCGGCCCTGGCCTGGACAGTCCGGGCCGAGGACCGCGAGGAC
CTCAAGAGCATCATGCTGCGGACGCACAGTTTGCAACAGCCCTATCTCGACTCCGAGCTACAGAGCCGATGGTTT
GACTTTGGCGGCGACACCATTGTTCGAACGGACTCCTACATCCGGCTCACGTCGGATCGCGGCTCACAGTCCGGC
TGGTTGTTCTCGCGCGTGCCGCTGACGGCGACCAACTGGGAGATCGAAGTCGAGTTCAGCATCTCGGGCAAGCAC
AACTTATACGGCGACGGGCTGGCCATGTGGGTGACGAAACAGCGCGGCCAGCCGGGTCCCGTCTTCGGCTCGGCC
GACCGGTTCGAAGGCCTGGGCATCTTTATCGACACGTACAAGAATAACCGACCGGGTGTGGTGTTCCCCTACGTC
ATGGCCATGGTCGGCGACGGGCACGCCTCTTACGACAAGAACAACGACGGCAAGGAGACGGAGCTGGCGGGCTGC
TCGGCCCGCGGCCTGAGGTCGGCCACGATGCCCACCAAGCTGCGCCTGACGTACATTCAGGACAAGCAGCTACGG
CTCGAGCTACAGTACAAAGTCGAGGGCGAATGGGAGCTGTGCTTCGAGACGACGCAGCCGCCGACGCTGCCCAAC
GTGGCCTACCTCGGCTTCAGCGCCGAGACGGGCGAGCTGAGCGATAACCACGACATCATCTCCGTCGCCGCCAAG
AACCTCTACAACACCCCCGGCGCCGCCAGCGGTCCTGGCGCCTCGGCCTCCAAGGGCAAGGGCCAGGGAGCCGGC
GCCTCGCACGCCCGTCCGCCGCGCCAAGGCGGTAGCTGGACTTGGTTCCTCATCAAGGCGATGCTGATGCTGGCC
GTCGTCGCCGGCGGCTACGGAGGCTGGACGGCCTACCGGGCCAAGAGCAGAAGCCACCGGTTTTAG
Gene >Ophio5|5813
ATGAGGCTGCCCCCCGTGTCGGCAGTGCTCCTCGCGGCCCTGGCCTGGACAGTCCGGGCCGAGGACCGCGAGGAC
CTCAAGAGCATCATGGTTCGTTGAAGCAGTTCAATATGGATGCAGGAGTGGACGCTGACGGGTGGCCATGATAGC
TGCGGACGCACAGTTTGCAACAGGTCCGTCGGTTTTCCCCCTCGACGATGCGAAAGCGATTCGGCTTACCGGTGA
CAGCCCTATCTCGACTCCGAGCTACAGAGCCGATGGTTTGACTTTGGCGGCGACACCATTGTTCGAACGGACTCG
TGCGATTCCCCCCTTCCACCCTTTCTCCTTGGTCCTGTGTCTCGGCCTCGTTGACCCTCTCCAGCTACATCCGGC
TCACGTCGGATCGCGGCTCACAGTCCGGCTGGTTGTTCTCGCGCGTGCCGCTGACGGCGACCAACTGGGAGATCG
AAGTCGAGTTCAGCATCTCGGGCAAGCACAACTTATACGGCGACGGGCTGGCCATGTGGGTGACGAAACAGCGCG
GCCAGCCGGGTCCCGTCTTCGGCTCGGCCGACCGGTTCGAAGGCCTGGGCATCTTTATCGACACGTACAAGAATA
ACCGACCGGGTGTGGTGTTCCCCTACGTCATGGCCATGGTCGGCGACGGGCACGCCTCTTACGACAAGAACAACG
ACGGCAAGGAGACGGAGCTGGCGGGCTGCTCGGCCCGCGGCCTGAGGTCGGCCACGATGCCCACCAAGCTGCGCC
TGACGTACATTCAGGACAAGCAGCTACGGCTCGAGCTACAGTACAAAGTCGAGGGCGAATGGGAGCTGTGCTTCG
AGACGACGCAGCCGCCGACGCTGCCCAACGTGGCCTACCTCGGCTTCAGCGCCGAGACGGGCGAGCTGAGCGATA
ACCACGACATCATCTCCGTCGCCGCCAAGAACCTCTACAACACCCCCGGCGCCGCCAGCGGTCCTGGCGCCTCGG
CCTCCAAGGGCAAGGGCCAGGGAGCCGGCGCCTCGCACGCCCGTCCGCCGCGCCAAGGCGGTAGCTGGACTTGGT
TCCTCATCAAGGCGATGCTGATGCTGGCCGTCGTCGCCGGCGGCTACGGAGGCTGGACGGCCTACCGGGCCAAGA
GCAGAAGCCACCGGTTTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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