© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5799 |
| Gene name | |
| Location | scaffold_486:11318..12854 |
| Strand | - |
| Gene length (bp) | 1536 |
| Transcript length (bp) | 1536 |
| Coding sequence length (bp) | 1533 |
| Protein length (aa) | 511 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05238 | CENP-N | Kinetochore protein CHL4 like | 9.1E-127 | 21 | 501 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9C0W0|MIS15_SCHPO | Kinetochore protein mis15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mis15 PE=1 SV=3 | 9 | 503 | 2.0E-17 |
| sp|P38907|CHL4_YEAST | Central kinetochore subunit CHL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CHL4 PE=1 SV=1 | 92 | 322 | 8.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051382 | kinetochore assembly | Yes |
| GO:0007059 | chromosome segregation | Yes |
| GO:0043933 | protein-containing complex organization | No |
| GO:0009987 | cellular process | No |
| GO:0022607 | cellular component assembly | No |
| GO:0006996 | organelle organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0051383 | kinetochore organization | No |
| GO:0070925 | organelle assembly | No |
| GO:0016043 | cellular component organization | No |
| GO:0051276 | chromosome organization | No |
| GO:0140694 | non-membrane-bounded organelle assembly | No |
| GO:0008150 | biological_process | No |
| GO:0065003 | protein-containing complex assembly | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.372 | 0.8255 | 0.1186 | 0.0092 | 0.2898 | 0.0088 | 0.0607 | 0.061 | 0.0475 | 0.044 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 79.52 | 43.33 | 115.72 |
| CcL | In ants, during behavior modification | 88.11 | 47.51 | 128.71 |
| CcD | In ants, recently dead | 60.14 | 32.87 | 87.41 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.697813 | no |
| SC16a | CcD | 0.228095 | no |
| CcL | CcD | 0.082910 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 4638 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5799 MARLSVPTKGRLPSSLRVDATNRAVVKSLGRLSRDALLSIALDWLDEANLPNAAPYIDDADSAVDYDDHDHLYPP CRSLADLRQLYQEMQSQKGSKRDVISRILEGDWRHGVTLYQLAMVDCAHLDDHPTSQKWTAYAILPLKLPSAEQG DDEPLKPDKESLTIPRFHPSTFVQNLQQHVLPDVKAHYHFYRPRDYPVLLLRIFVIDSPYTTALALSNPAADFAS SRTIYLAFPDGSPSLYITRSQTTGPISLGESKSLHGLIVNGVPKALSRPRQRFVLRPTNLSTRNLWALLDRRGGG RGNAAAAGWSIYADERLRNSPLDTRLPPDSRWAGAKPSGSDVVASRRRPPPAEPAREVKRARVVAQARFADEALV TDGKGVERVDILMQDPFPADDGLPPDLDPDTTDAAAQDQDARHQRAQDRRRSKMEAVLQQARDDDDDVADEADAS QWTPALRLSFQGPHVFAGIRQLVEAGIVDGERMPGWMTGEEGVTTGVVRHGRIRGYKGAGL |
| Coding | >Ophio5|5799 ATGGCCCGTCTCTCCGTCCCCACCAAGGGCCGGCTGCCGTCTTCCCTCCGCGTCGATGCCACCAACCGGGCGGTG GTGAAGAGCCTGGGCCGGCTCTCGCGCGATGCGCTGCTCTCCATCGCCCTCGACTGGCTGGATGAGGCCAACCTG CCCAACGCGGCGCCGTATATCGACGATGCAGACTCGGCCGTCGACTATGATGACCACGATCATCTTTATCCGCCT TGCCGCTCTCTCGCCGACCTCCGCCAGCTGTATCAGGAAATGCAGTCTCAAAAGGGCTCCAAGCGCGACGTTATC AGTCGCATCCTTGAGGGAGACTGGCGCCATGGTGTGACGCTGTATCAGCTCGCTATGGTCGACTGCGCACATCTG GACGACCATCCCACCTCTCAGAAATGGACAGCCTATGCTATCCTCCCACTCAAGCTTCCCTCGGCCGAACAGGGT GACGACGAGCCGCTCAAGCCCGACAAGGAGAGCCTGACTATCCCCCGCTTTCACCCCTCGACGTTTGTGCAGAAC CTACAGCAACACGTCCTCCCCGACGTCAAGGCTCATTATCATTTCTATCGCCCGCGGGACTATCCTGTCCTGCTC CTACGCATCTTCGTCATCGATTCACCATACACCACCGCTCTAGCACTATCCAACCCAGCCGCCGACTTCGCCTCC TCCCGGACCATCTACCTCGCCTTCCCCGACGGCTCGCCCTCGCTGTACATCACCCGCTCGCAGACCACCGGCCCC ATCAGCCTTGGCGAGTCCAAGAGCCTGCATGGGCTCATCGTCAACGGCGTGCCGAAAGCACTGTCGCGGCCGCGG CAACGCTTCGTCCTCAGGCCTACCAATCTCTCCACTCGCAATTTGTGGGCGCTGTTGGACAGGCGCGGCGGCGGT CGGGGGAACGCAGCCGCCGCCGGCTGGAGCATCTACGCAGACGAACGCCTCAGGAACTCGCCCCTCGATACTCGG CTTCCCCCAGACTCGCGCTGGGCAGGCGCCAAACCGTCGGGCTCCGACGTCGTCGCTTCGAGAAGGCGCCCGCCG CCGGCGGAGCCAGCCCGGGAGGTGAAGCGCGCCAGGGTTGTCGCGCAGGCTCGCTTCGCCGACGAAGCCTTGGTC ACGGATGGCAAGGGCGTAGAAAGGGTCGACATACTGATGCAAGATCCGTTCCCTGCCGACGACGGCCTGCCCCCG GATCTCGATCCGGACACGACGGATGCCGCCGCCCAGGACCAAGATGCCCGCCACCAACGGGCCCAGGACCGGAGA CGCAGCAAGATGGAGGCCGTGCTGCAGCAGGCTCGTGACGATGACGACGATGTCGCCGACGAGGCAGACGCGTCA CAGTGGACACCGGCCTTGCGGCTGTCCTTTCAAGGCCCGCACGTCTTTGCGGGAATCAGGCAGCTCGTCGAGGCC GGCATCGTCGACGGCGAGCGGATGCCCGGGTGGATGACTGGTGAAGAGGGGGTGACGACGGGTGTGGTGAGGCAC GGTCGCATCAGGGGCTACAAAGGAGCAGGCCTG |
| Transcript | >Ophio5|5799 ATGGCCCGTCTCTCCGTCCCCACCAAGGGCCGGCTGCCGTCTTCCCTCCGCGTCGATGCCACCAACCGGGCGGTG GTGAAGAGCCTGGGCCGGCTCTCGCGCGATGCGCTGCTCTCCATCGCCCTCGACTGGCTGGATGAGGCCAACCTG CCCAACGCGGCGCCGTATATCGACGATGCAGACTCGGCCGTCGACTATGATGACCACGATCATCTTTATCCGCCT TGCCGCTCTCTCGCCGACCTCCGCCAGCTGTATCAGGAAATGCAGTCTCAAAAGGGCTCCAAGCGCGACGTTATC AGTCGCATCCTTGAGGGAGACTGGCGCCATGGTGTGACGCTGTATCAGCTCGCTATGGTCGACTGCGCACATCTG GACGACCATCCCACCTCTCAGAAATGGACAGCCTATGCTATCCTCCCACTCAAGCTTCCCTCGGCCGAACAGGGT GACGACGAGCCGCTCAAGCCCGACAAGGAGAGCCTGACTATCCCCCGCTTTCACCCCTCGACGTTTGTGCAGAAC CTACAGCAACACGTCCTCCCCGACGTCAAGGCTCATTATCATTTCTATCGCCCGCGGGACTATCCTGTCCTGCTC CTACGCATCTTCGTCATCGATTCACCATACACCACCGCTCTAGCACTATCCAACCCAGCCGCCGACTTCGCCTCC TCCCGGACCATCTACCTCGCCTTCCCCGACGGCTCGCCCTCGCTGTACATCACCCGCTCGCAGACCACCGGCCCC ATCAGCCTTGGCGAGTCCAAGAGCCTGCATGGGCTCATCGTCAACGGCGTGCCGAAAGCACTGTCGCGGCCGCGG CAACGCTTCGTCCTCAGGCCTACCAATCTCTCCACTCGCAATTTGTGGGCGCTGTTGGACAGGCGCGGCGGCGGT CGGGGGAACGCAGCCGCCGCCGGCTGGAGCATCTACGCAGACGAACGCCTCAGGAACTCGCCCCTCGATACTCGG CTTCCCCCAGACTCGCGCTGGGCAGGCGCCAAACCGTCGGGCTCCGACGTCGTCGCTTCGAGAAGGCGCCCGCCG CCGGCGGAGCCAGCCCGGGAGGTGAAGCGCGCCAGGGTTGTCGCGCAGGCTCGCTTCGCCGACGAAGCCTTGGTC ACGGATGGCAAGGGCGTAGAAAGGGTCGACATACTGATGCAAGATCCGTTCCCTGCCGACGACGGCCTGCCCCCG GATCTCGATCCGGACACGACGGATGCCGCCGCCCAGGACCAAGATGCCCGCCACCAACGGGCCCAGGACCGGAGA CGCAGCAAGATGGAGGCCGTGCTGCAGCAGGCTCGTGACGATGACGACGATGTCGCCGACGAGGCAGACGCGTCA CAGTGGACACCGGCCTTGCGGCTGTCCTTTCAAGGCCCGCACGTCTTTGCGGGAATCAGGCAGCTCGTCGAGGCC GGCATCGTCGACGGCGAGCGGATGCCCGGGTGGATGACTGGTGAAGAGGGGGTGACGACGGGTGTGGTGAGGCAC GGTCGCATCAGGGGCTACAAAGGAGCAGGCCTGTGA |
| Gene | >Ophio5|5799 ATGGCCCGTCTCTCCGTCCCCACCAAGGGCCGGCTGCCGTCTTCCCTCCGCGTCGATGCCACCAACCGGGCGGTG GTGAAGAGCCTGGGCCGGCTCTCGCGCGATGCGCTGCTCTCCATCGCCCTCGACTGGCTGGATGAGGCCAACCTG CCCAACGCGGCGCCGTATATCGACGATGCAGACTCGGCCGTCGACTATGATGACCACGATCATCTTTATCCGCCT TGCCGCTCTCTCGCCGACCTCCGCCAGCTGTATCAGGAAATGCAGTCTCAAAAGGGCTCCAAGCGCGACGTTATC AGTCGCATCCTTGAGGGAGACTGGCGCCATGGTGTGACGCTGTATCAGCTCGCTATGGTCGACTGCGCACATCTG GACGACCATCCCACCTCTCAGAAATGGACAGCCTATGCTATCCTCCCACTCAAGCTTCCCTCGGCCGAACAGGGT GACGACGAGCCGCTCAAGCCCGACAAGGAGAGCCTGACTATCCCCCGCTTTCACCCCTCGACGTTTGTGCAGAAC CTACAGCAACACGTCCTCCCCGACGTCAAGGCTCATTATCATTTCTATCGCCCGCGGGACTATCCTGTCCTGCTC CTACGCATCTTCGTCATCGATTCACCATACACCACCGCTCTAGCACTATCCAACCCAGCCGCCGACTTCGCCTCC TCCCGGACCATCTACCTCGCCTTCCCCGACGGCTCGCCCTCGCTGTACATCACCCGCTCGCAGACCACCGGCCCC ATCAGCCTTGGCGAGTCCAAGAGCCTGCATGGGCTCATCGTCAACGGCGTGCCGAAAGCACTGTCGCGGCCGCGG CAACGCTTCGTCCTCAGGCCTACCAATCTCTCCACTCGCAATTTGTGGGCGCTGTTGGACAGGCGCGGCGGCGGT CGGGGGAACGCAGCCGCCGCCGGCTGGAGCATCTACGCAGACGAACGCCTCAGGAACTCGCCCCTCGATACTCGG CTTCCCCCAGACTCGCGCTGGGCAGGCGCCAAACCGTCGGGCTCCGACGTCGTCGCTTCGAGAAGGCGCCCGCCG CCGGCGGAGCCAGCCCGGGAGGTGAAGCGCGCCAGGGTTGTCGCGCAGGCTCGCTTCGCCGACGAAGCCTTGGTC ACGGATGGCAAGGGCGTAGAAAGGGTCGACATACTGATGCAAGATCCGTTCCCTGCCGACGACGGCCTGCCCCCG GATCTCGATCCGGACACGACGGATGCCGCCGCCCAGGACCAAGATGCCCGCCACCAACGGGCCCAGGACCGGAGA CGCAGCAAGATGGAGGCCGTGCTGCAGCAGGCTCGTGACGATGACGACGATGTCGCCGACGAGGCAGACGCGTCA CAGTGGACACCGGCCTTGCGGCTGTCCTTTCAAGGCCCGCACGTCTTTGCGGGAATCAGGCAGCTCGTCGAGGCC GGCATCGTCGACGGCGAGCGGATGCCCGGGTGGATGACTGGTGAAGAGGGGGTGACGACGGGTGTGGTGAGGCAC GGTCGCATCAGGGGCTACAAAGGAGCAGGCCTGTGA |