Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5782
Gene name
Locationscaffold_484:4119..5447
Strand+
Gene length (bp)1328
Transcript length (bp)1089
Coding sequence length (bp)1086
Protein length (aa) 362

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04146 YTH YT521-B-like domain 1.5E-21 136 207
PF04146 YTH YT521-B-like domain 9.6E-12 216 271

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=2 108 271 6.0E-22
sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3 108 271 7.0E-22
sp|E9Q5K9|YTDC1_MOUSE YTH domain-containing protein 1 OS=Mus musculus GN=Ythdc1 PE=1 SV=2 108 271 8.0E-22
sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 97 271 3.0E-19
sp|A9LNK9|CPSF_ARATH 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 131 271 8.0E-18
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Swissprot ID Swissprot Description Start End E-value
sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=2 108 271 6.0E-22
sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3 108 271 7.0E-22
sp|E9Q5K9|YTDC1_MOUSE YTH domain-containing protein 1 OS=Mus musculus GN=Ythdc1 PE=1 SV=2 108 271 8.0E-22
sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 97 271 3.0E-19
sp|A9LNK9|CPSF_ARATH 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 131 271 8.0E-18
sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1 136 270 8.0E-15
sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=1 SV=1 137 270 3.0E-14
sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2 136 270 1.0E-13
sp|Q06390|MRB1_YEAST Methylated RNA-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHO92 PE=1 SV=1 134 271 9.0E-07
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003676 nucleic acid binding No
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5782
MTSAAAHDTEAKPSSALPNSTSAAVHESGSGDGRLRRLLKDDTDLRLWLQHTRYFDVAHRDRVLDGIRKLQAIDE
ERKKLMVELQGAAGGLMQVPSPKVPRQVTSPPSGSATDSANAGSSAADEDLAATTLPLKDTRFFLVKCFNTANIY
MSQRDGLWVTQTKNGDVFSQAFRECQSVILFFSINKSRGFQGFARMLSAPDPGLPKPDWIQRINLKAATDPFRVE
WINTAVTEFDQVGDLKNSLNEFRSVVVGRDGQEYPPECGLKMMALLSQAAIKPSYSAVVGPAPKLPSTGRSSLTA
GPPSTGFSTAAADVAAVPPSSRPWRAVRHRELSPPQTPQPAVSTPPVAELSSQKGHLNLIDC
Coding >Ophio5|5782
ATGACAAGCGCGGCAGCCCACGACACGGAAGCCAAGCCTTCATCGGCCCTACCCAACAGCACGTCGGCGGCCGTC
CATGAGTCCGGCTCCGGCGACGGTAGGCTGCGGAGGCTGCTCAAGGACGACACGGACCTGAGGCTCTGGCTGCAG
CACACGCGATACTTCGACGTCGCCCATCGCGACCGTGTCCTCGACGGCATCCGCAAGCTCCAGGCCATCGACGAG
GAGCGTAAAAAGCTCATGGTCGAGCTCCAGGGCGCCGCCGGGGGACTGATGCAGGTGCCGTCCCCAAAGGTACCG
CGTCAGGTCACGTCACCACCGTCCGGCTCCGCCACCGACTCGGCCAACGCCGGCTCCAGCGCGGCCGACGAGGAC
CTGGCCGCGACGACGCTTCCTCTCAAGGACACACGCTTCTTCCTGGTCAAGTGCTTCAACACGGCAAACATTTAC
ATGTCTCAGAGAGATGGACTCTGGGTGACGCAGACAAAGAATGGTGACGTCTTTTCACAAGCATTCCGAGAATGT
CAGAGCGTTATTCTATTCTTTTCCATCAACAAGTCTCGAGGGTTTCAGGGATTTGCCAGAATGCTATCGGCCCCG
GACCCCGGTCTTCCCAAGCCTGATTGGATTCAGAGAATAAACCTCAAGGCAGCGACGGATCCCTTCCGGGTAGAG
TGGATCAACACGGCCGTGACCGAGTTCGACCAGGTCGGCGACCTCAAGAACTCGCTCAATGAGTTCAGGTCCGTC
GTCGTCGGCAGAGACGGTCAGGAGTATCCGCCCGAGTGCGGTCTCAAGATGATGGCCCTCCTGAGTCAGGCCGCC
ATCAAGCCCTCCTATTCCGCCGTGGTTGGCCCCGCTCCCAAGCTGCCCTCTACCGGCCGCTCCTCCTTGACCGCC
GGCCCCCCCTCGACCGGATTCTCGACCGCTGCTGCAGACGTCGCCGCCGTCCCGCCTTCTTCCCGTCCTTGGCGT
GCCGTCCGTCATCGGGAGTTGAGCCCACCGCAGACGCCGCAGCCGGCTGTCTCGACGCCGCCCGTTGCCGAACTG
TCGTCGCAAAAGGGTCACCTCAACCTGATTGATTGT
Transcript >Ophio5|5782
ATGACAAGCGCGGCAGCCCACGACACGGAAGCCAAGCCTTCATCGGCCCTACCCAACAGCACGTCGGCGGCCGTC
CATGAGTCCGGCTCCGGCGACGGTAGGCTGCGGAGGCTGCTCAAGGACGACACGGACCTGAGGCTCTGGCTGCAG
CACACGCGATACTTCGACGTCGCCCATCGCGACCGTGTCCTCGACGGCATCCGCAAGCTCCAGGCCATCGACGAG
GAGCGTAAAAAGCTCATGGTCGAGCTCCAGGGCGCCGCCGGGGGACTGATGCAGGTGCCGTCCCCAAAGGTACCG
CGTCAGGTCACGTCACCACCGTCCGGCTCCGCCACCGACTCGGCCAACGCCGGCTCCAGCGCGGCCGACGAGGAC
CTGGCCGCGACGACGCTTCCTCTCAAGGACACACGCTTCTTCCTGGTCAAGTGCTTCAACACGGCAAACATTTAC
ATGTCTCAGAGAGATGGACTCTGGGTGACGCAGACAAAGAATGGTGACGTCTTTTCACAAGCATTCCGAGAATGT
CAGAGCGTTATTCTATTCTTTTCCATCAACAAGTCTCGAGGGTTTCAGGGATTTGCCAGAATGCTATCGGCCCCG
GACCCCGGTCTTCCCAAGCCTGATTGGATTCAGAGAATAAACCTCAAGGCAGCGACGGATCCCTTCCGGGTAGAG
TGGATCAACACGGCCGTGACCGAGTTCGACCAGGTCGGCGACCTCAAGAACTCGCTCAATGAGTTCAGGTCCGTC
GTCGTCGGCAGAGACGGTCAGGAGTATCCGCCCGAGTGCGGTCTCAAGATGATGGCCCTCCTGAGTCAGGCCGCC
ATCAAGCCCTCCTATTCCGCCGTGGTTGGCCCCGCTCCCAAGCTGCCCTCTACCGGCCGCTCCTCCTTGACCGCC
GGCCCCCCCTCGACCGGATTCTCGACCGCTGCTGCAGACGTCGCCGCCGTCCCGCCTTCTTCCCGTCCTTGGCGT
GCCGTCCGTCATCGGGAGTTGAGCCCACCGCAGACGCCGCAGCCGGCTGTCTCGACGCCGCCCGTTGCCGAACTG
TCGTCGCAAAAGGGTCACCTCAACCTGATTGATTGTTGA
Gene >Ophio5|5782
ATGACAAGCGCGGCAGCCCACGACACGGAAGCCAAGCCTTCATCGGCCCTACCCAACAGCACGTCGGCGGCCGTC
CATGAGTCCGGCTCCGGCGACGGTAGGCTGCGGAGGCTGCTCAAGGACGACACGGACCTGAGGCTCTGGCTGCAG
CACACGCGATACTTCGACGTCGCCCATCGCGACCGTGTCCTCGACGGCATCCGCAAGCTCCAGGCCATCGACGAG
GAGCGTAAAAAGCTCATGGTCGAGCTCCAGGGCGCCGCCGGGGGACTGATGCAGGTGCCGTCCCCAAAGGTACCG
CGTCAGGTCACGTCACCACCGTCCGGCTCCGCCACCGACTCGGCCAACGCCGGCTCCAGCGCGGCCGACGAGGAC
CTGGCCGCGACGACGCTTCCTCTCAAGGGTAGCTCTGCTCTCGTCGGCGCTGCTTTGCCGTCGAGGCCTGCTAAA
GTGGCCGCAGACACACGCTTCTTCCTGGTCAAGTGCTTCAACACGGCAAACATTTACATGTCTCAGAGAGATGTA
CGTTTGCCCACGCTCCTCCTCCTTTTCCTCCTCTCCATGGCGGCCATCGGTTTACCAAGAAACAGGGACTCTGGG
TGACGCAGACAAAGAATGGTGACGTCTTTTCACAAGCATTCCGAGAATGTCAGAGCGTTATTCTATTCTTTTCCA
TCAACAAGTCTCGAGGGTTTCAGGGATTTGTGAGTTGCCTCCCCCCGCCCCCTTCGTTTTTTCTTCTTCTTCTTC
TTCTTCTCCTTTTCTCCCCTACCTTGTCCCCGCTAACTCCCATTCTTCTCGCCCTCGCGTGTCCAAAGGCCAGAA
TGCTATCGGCCCCGGACCCCGGTCTTCCCAAGCCTGATTGGATTCAGAGAATAAACCTCAAGGCAGCGACGGATC
CCTTCCGGGTAGAGTGGATCAACACGGCCGTGACCGAGTTCGACCAGGTCGGCGACCTCAAGAACTCGCTCAATG
AGTTCAGGTCCGTCGTCGTCGGCAGAGACGGTCAGGAGTATCCGCCCGAGTGCGGTCTCAAGATGATGGCCCTCC
TGAGTCAGGCCGCCATCAAGCCCTCCTATTCCGCCGTGGTTGGCCCCGCTCCCAAGCTGCCCTCTACCGGCCGCT
CCTCCTTGACCGCCGGCCCCCCCTCGACCGGATTCTCGACCGCTGCTGCAGACGTCGCCGCCGTCCCGCCTTCTT
CCCGTCCTTGGCGTGCCGTCCGTCATCGGGAGTTGAGCCCACCGCAGACGCCGCAGCCGGCTGTCTCGACGCCGC
CCGTTGCCGAACTGTCGTCGCAAAAGGGTCACCTCAACCTGATTGATTGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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