© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5782 |
| Gene name | |
| Location | scaffold_484:4119..5447 |
| Strand | + |
| Gene length (bp) | 1328 |
| Transcript length (bp) | 1089 |
| Coding sequence length (bp) | 1086 |
| Protein length (aa) | 362 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04146 | YTH | YT521-B-like domain | 1.5E-21 | 136 | 207 |
| PF04146 | YTH | YT521-B-like domain | 9.6E-12 | 216 | 271 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9QY02|YTDC1_RAT | YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=2 | 108 | 271 | 6.0E-22 |
| sp|Q96MU7|YTDC1_HUMAN | YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3 | 108 | 271 | 7.0E-22 |
| sp|E9Q5K9|YTDC1_MOUSE | YTH domain-containing protein 1 OS=Mus musculus GN=Ythdc1 PE=1 SV=2 | 108 | 271 | 8.0E-22 |
| sp|Q0DA50|C3H45_ORYSJ | Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 | 97 | 271 | 3.0E-19 |
| sp|A9LNK9|CPSF_ARATH | 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 | 131 | 271 | 8.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9QY02|YTDC1_RAT | YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=2 | 108 | 271 | 6.0E-22 |
| sp|Q96MU7|YTDC1_HUMAN | YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3 | 108 | 271 | 7.0E-22 |
| sp|E9Q5K9|YTDC1_MOUSE | YTH domain-containing protein 1 OS=Mus musculus GN=Ythdc1 PE=1 SV=2 | 108 | 271 | 8.0E-22 |
| sp|Q0DA50|C3H45_ORYSJ | Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 | 97 | 271 | 3.0E-19 |
| sp|A9LNK9|CPSF_ARATH | 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 | 131 | 271 | 8.0E-18 |
| sp|Q5R746|YTDC2_PONAB | YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1 | 136 | 270 | 8.0E-15 |
| sp|B2RR83|YTDC2_MOUSE | Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=1 SV=1 | 137 | 270 | 3.0E-14 |
| sp|Q9H6S0|YTDC2_HUMAN | Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2 | 136 | 270 | 1.0E-13 |
| sp|Q06390|MRB1_YEAST | Methylated RNA-binding protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHO92 PE=1 SV=1 | 134 | 271 | 9.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5782 MTSAAAHDTEAKPSSALPNSTSAAVHESGSGDGRLRRLLKDDTDLRLWLQHTRYFDVAHRDRVLDGIRKLQAIDE ERKKLMVELQGAAGGLMQVPSPKVPRQVTSPPSGSATDSANAGSSAADEDLAATTLPLKDTRFFLVKCFNTANIY MSQRDGLWVTQTKNGDVFSQAFRECQSVILFFSINKSRGFQGFARMLSAPDPGLPKPDWIQRINLKAATDPFRVE WINTAVTEFDQVGDLKNSLNEFRSVVVGRDGQEYPPECGLKMMALLSQAAIKPSYSAVVGPAPKLPSTGRSSLTA GPPSTGFSTAAADVAAVPPSSRPWRAVRHRELSPPQTPQPAVSTPPVAELSSQKGHLNLIDC |
| Coding | >Ophio5|5782 ATGACAAGCGCGGCAGCCCACGACACGGAAGCCAAGCCTTCATCGGCCCTACCCAACAGCACGTCGGCGGCCGTC CATGAGTCCGGCTCCGGCGACGGTAGGCTGCGGAGGCTGCTCAAGGACGACACGGACCTGAGGCTCTGGCTGCAG CACACGCGATACTTCGACGTCGCCCATCGCGACCGTGTCCTCGACGGCATCCGCAAGCTCCAGGCCATCGACGAG GAGCGTAAAAAGCTCATGGTCGAGCTCCAGGGCGCCGCCGGGGGACTGATGCAGGTGCCGTCCCCAAAGGTACCG CGTCAGGTCACGTCACCACCGTCCGGCTCCGCCACCGACTCGGCCAACGCCGGCTCCAGCGCGGCCGACGAGGAC CTGGCCGCGACGACGCTTCCTCTCAAGGACACACGCTTCTTCCTGGTCAAGTGCTTCAACACGGCAAACATTTAC ATGTCTCAGAGAGATGGACTCTGGGTGACGCAGACAAAGAATGGTGACGTCTTTTCACAAGCATTCCGAGAATGT CAGAGCGTTATTCTATTCTTTTCCATCAACAAGTCTCGAGGGTTTCAGGGATTTGCCAGAATGCTATCGGCCCCG GACCCCGGTCTTCCCAAGCCTGATTGGATTCAGAGAATAAACCTCAAGGCAGCGACGGATCCCTTCCGGGTAGAG TGGATCAACACGGCCGTGACCGAGTTCGACCAGGTCGGCGACCTCAAGAACTCGCTCAATGAGTTCAGGTCCGTC GTCGTCGGCAGAGACGGTCAGGAGTATCCGCCCGAGTGCGGTCTCAAGATGATGGCCCTCCTGAGTCAGGCCGCC ATCAAGCCCTCCTATTCCGCCGTGGTTGGCCCCGCTCCCAAGCTGCCCTCTACCGGCCGCTCCTCCTTGACCGCC GGCCCCCCCTCGACCGGATTCTCGACCGCTGCTGCAGACGTCGCCGCCGTCCCGCCTTCTTCCCGTCCTTGGCGT GCCGTCCGTCATCGGGAGTTGAGCCCACCGCAGACGCCGCAGCCGGCTGTCTCGACGCCGCCCGTTGCCGAACTG TCGTCGCAAAAGGGTCACCTCAACCTGATTGATTGT |
| Transcript | >Ophio5|5782 ATGACAAGCGCGGCAGCCCACGACACGGAAGCCAAGCCTTCATCGGCCCTACCCAACAGCACGTCGGCGGCCGTC CATGAGTCCGGCTCCGGCGACGGTAGGCTGCGGAGGCTGCTCAAGGACGACACGGACCTGAGGCTCTGGCTGCAG CACACGCGATACTTCGACGTCGCCCATCGCGACCGTGTCCTCGACGGCATCCGCAAGCTCCAGGCCATCGACGAG GAGCGTAAAAAGCTCATGGTCGAGCTCCAGGGCGCCGCCGGGGGACTGATGCAGGTGCCGTCCCCAAAGGTACCG CGTCAGGTCACGTCACCACCGTCCGGCTCCGCCACCGACTCGGCCAACGCCGGCTCCAGCGCGGCCGACGAGGAC CTGGCCGCGACGACGCTTCCTCTCAAGGACACACGCTTCTTCCTGGTCAAGTGCTTCAACACGGCAAACATTTAC ATGTCTCAGAGAGATGGACTCTGGGTGACGCAGACAAAGAATGGTGACGTCTTTTCACAAGCATTCCGAGAATGT CAGAGCGTTATTCTATTCTTTTCCATCAACAAGTCTCGAGGGTTTCAGGGATTTGCCAGAATGCTATCGGCCCCG GACCCCGGTCTTCCCAAGCCTGATTGGATTCAGAGAATAAACCTCAAGGCAGCGACGGATCCCTTCCGGGTAGAG TGGATCAACACGGCCGTGACCGAGTTCGACCAGGTCGGCGACCTCAAGAACTCGCTCAATGAGTTCAGGTCCGTC GTCGTCGGCAGAGACGGTCAGGAGTATCCGCCCGAGTGCGGTCTCAAGATGATGGCCCTCCTGAGTCAGGCCGCC ATCAAGCCCTCCTATTCCGCCGTGGTTGGCCCCGCTCCCAAGCTGCCCTCTACCGGCCGCTCCTCCTTGACCGCC GGCCCCCCCTCGACCGGATTCTCGACCGCTGCTGCAGACGTCGCCGCCGTCCCGCCTTCTTCCCGTCCTTGGCGT GCCGTCCGTCATCGGGAGTTGAGCCCACCGCAGACGCCGCAGCCGGCTGTCTCGACGCCGCCCGTTGCCGAACTG TCGTCGCAAAAGGGTCACCTCAACCTGATTGATTGTTGA |
| Gene | >Ophio5|5782 ATGACAAGCGCGGCAGCCCACGACACGGAAGCCAAGCCTTCATCGGCCCTACCCAACAGCACGTCGGCGGCCGTC CATGAGTCCGGCTCCGGCGACGGTAGGCTGCGGAGGCTGCTCAAGGACGACACGGACCTGAGGCTCTGGCTGCAG CACACGCGATACTTCGACGTCGCCCATCGCGACCGTGTCCTCGACGGCATCCGCAAGCTCCAGGCCATCGACGAG GAGCGTAAAAAGCTCATGGTCGAGCTCCAGGGCGCCGCCGGGGGACTGATGCAGGTGCCGTCCCCAAAGGTACCG CGTCAGGTCACGTCACCACCGTCCGGCTCCGCCACCGACTCGGCCAACGCCGGCTCCAGCGCGGCCGACGAGGAC CTGGCCGCGACGACGCTTCCTCTCAAGGGTAGCTCTGCTCTCGTCGGCGCTGCTTTGCCGTCGAGGCCTGCTAAA GTGGCCGCAGACACACGCTTCTTCCTGGTCAAGTGCTTCAACACGGCAAACATTTACATGTCTCAGAGAGATGTA CGTTTGCCCACGCTCCTCCTCCTTTTCCTCCTCTCCATGGCGGCCATCGGTTTACCAAGAAACAGGGACTCTGGG TGACGCAGACAAAGAATGGTGACGTCTTTTCACAAGCATTCCGAGAATGTCAGAGCGTTATTCTATTCTTTTCCA TCAACAAGTCTCGAGGGTTTCAGGGATTTGTGAGTTGCCTCCCCCCGCCCCCTTCGTTTTTTCTTCTTCTTCTTC TTCTTCTCCTTTTCTCCCCTACCTTGTCCCCGCTAACTCCCATTCTTCTCGCCCTCGCGTGTCCAAAGGCCAGAA TGCTATCGGCCCCGGACCCCGGTCTTCCCAAGCCTGATTGGATTCAGAGAATAAACCTCAAGGCAGCGACGGATC CCTTCCGGGTAGAGTGGATCAACACGGCCGTGACCGAGTTCGACCAGGTCGGCGACCTCAAGAACTCGCTCAATG AGTTCAGGTCCGTCGTCGTCGGCAGAGACGGTCAGGAGTATCCGCCCGAGTGCGGTCTCAAGATGATGGCCCTCC TGAGTCAGGCCGCCATCAAGCCCTCCTATTCCGCCGTGGTTGGCCCCGCTCCCAAGCTGCCCTCTACCGGCCGCT CCTCCTTGACCGCCGGCCCCCCCTCGACCGGATTCTCGACCGCTGCTGCAGACGTCGCCGCCGTCCCGCCTTCTT CCCGTCCTTGGCGTGCCGTCCGTCATCGGGAGTTGAGCCCACCGCAGACGCCGCAGCCGGCTGTCTCGACGCCGC CCGTTGCCGAACTGTCGTCGCAAAAGGGTCACCTCAACCTGATTGATTGTTGA |