© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5771 |
| Gene name | |
| Location | scaffold_482:10996..12479 |
| Strand | + |
| Gene length (bp) | 1483 |
| Transcript length (bp) | 1290 |
| Coding sequence length (bp) | 1287 |
| Protein length (aa) | 429 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5384 | 0.4419 | 0.1985 | 0.3678 | 0.2379 | 0.0395 | 0.1879 | 0.3168 | 0.1669 | 0.0194 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 374 | 396 | 22 |
| 2 | 401 | 423 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 23.26 | 11.15 | 35.37 |
| CcL | In ants, during behavior modification | 6.03 | 1.78 | 10.29 |
| CcD | In ants, recently dead | 12.03 | 4.82 | 19.24 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.016488 | yes |
| CcL | CcD | 0.037825 | yes |
| Orthofinder run ID | 4 |
| Orthogroup | 6604 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps camponoti-floridani | Ophcf2|03037 |
| Ophiocordyceps kimflemingae | Ophio5|5771 (this protein) |
| Ophiocordyceps subramaniannii | Hirsu2|3447 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5771 MAFDGVTRLRQQPTCPGGGEERLQSEFFFVFFSLPFLRTTSSPYEHGGRTLDAAMWWGMGITDTAKLSRSGRRVF LHKADELLARLERVRERAAGRAEPGAVAVAMVEKEKEKEKEEEEEEEEEGEVNGTMSMDNEMNGTTTKVSNLGKT SRDDKAEETRQTQMQDDRLDGPELNKPKHTLTQDAEVGETKQTTMMQVSSYQTHLDSRQDHVCQQAADQRSPESS KLSPAREAGHVLLSPWPETFAGRLETYLDAMDSDQSKDDGPDQLAMTPSHLGRLDEDIGQVAHLRASLLESISQL DRRRTCHSDRWKRAGGAADVAALMKSRGLGSLLARTADTYQDQPPRDEWEDWSSPRSGRSRLRGAEQYYGGAPII IIIIFFFFIIFFFFIIILFFFFLFFFFIFFIFLIIIIIIIIIVFFFFFLQSRVS |
| Coding | >Ophio5|5771 ATGGCTTTTGATGGCGTCACGCGGCTTCGTCAACAGCCCACCTGCCCCGGTGGTGGTGAAGAGCGGCTTCAGTCA GAGTTTTTTTTTGTTTTTTTTTCCCTTCCCTTCCTTCGGACGACATCATCACCTTATGAGCACGGCGGCAGGACC CTCGACGCGGCCATGTGGTGGGGGATGGGAATCACCGACACGGCGAAGCTGTCGAGAAGCGGGAGGCGAGTGTTT CTGCATAAGGCGGATGAACTGCTGGCCAGGTTGGAGAGGGTGAGGGAGAGGGCTGCGGGGAGAGCTGAGCCGGGA GCTGTTGCGGTTGCCATGGTTGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGGT GAAGTGAACGGGACGATGAGCATGGACAACGAGATGAACGGAACGACGACCAAAGTTTCGAACCTTGGCAAGACG AGCCGAGACGACAAGGCCGAGGAAACAAGGCAGACACAGATGCAAGACGACAGGCTAGACGGACCAGAGCTGAAC AAGCCGAAGCATACGCTGACGCAAGACGCCGAGGTTGGGGAGACGAAGCAGACAACCATGATGCAAGTGTCGTCG TATCAGACGCATCTCGACAGTCGCCAAGACCACGTCTGCCAACAAGCTGCCGACCAACGAAGCCCAGAGAGCAGC AAGCTTTCCCCAGCGAGGGAAGCCGGCCACGTCCTCCTTTCGCCATGGCCAGAGACATTCGCCGGCCGACTTGAG ACCTACCTCGACGCCATGGACTCGGACCAATCCAAAGACGACGGACCCGACCAACTGGCCATGACGCCATCTCAC CTCGGCCGACTCGACGAAGACATCGGTCAAGTAGCCCACCTTCGGGCGAGCCTGCTAGAGAGCATCAGCCAGCTC GACAGACGGCGTACCTGCCACTCTGACCGCTGGAAGCGTGCCGGTGGCGCCGCCGACGTCGCCGCCCTCATGAAG AGCCGTGGTCTGGGTAGCTTGTTGGCCCGGACCGCGGATACGTACCAAGACCAGCCGCCGCGAGATGAATGGGAA GACTGGTCGTCTCCTCGTTCGGGCCGGTCGAGGCTACGGGGTGCAGAGCAATACTACGGGGGTGCTCCCATCATC ATCATCATCATCTTCTTCTTCTTCATCATCTTCTTCTTCTTCATCATCATCTTGTTCTTCTTCTTCCTCTTCTTC TTCTTCATCTTCTTCATCTTCCTCATCATCATCATCATCATCATCATCATCGTCTTCTTCTTCTTCTTCTTGCAG TCCCGTGTTTCA |
| Transcript | >Ophio5|5771 ATGGCTTTTGATGGCGTCACGCGGCTTCGTCAACAGCCCACCTGCCCCGGTGGTGGTGAAGAGCGGCTTCAGTCA GAGTTTTTTTTTGTTTTTTTTTCCCTTCCCTTCCTTCGGACGACATCATCACCTTATGAGCACGGCGGCAGGACC CTCGACGCGGCCATGTGGTGGGGGATGGGAATCACCGACACGGCGAAGCTGTCGAGAAGCGGGAGGCGAGTGTTT CTGCATAAGGCGGATGAACTGCTGGCCAGGTTGGAGAGGGTGAGGGAGAGGGCTGCGGGGAGAGCTGAGCCGGGA GCTGTTGCGGTTGCCATGGTTGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGGT GAAGTGAACGGGACGATGAGCATGGACAACGAGATGAACGGAACGACGACCAAAGTTTCGAACCTTGGCAAGACG AGCCGAGACGACAAGGCCGAGGAAACAAGGCAGACACAGATGCAAGACGACAGGCTAGACGGACCAGAGCTGAAC AAGCCGAAGCATACGCTGACGCAAGACGCCGAGGTTGGGGAGACGAAGCAGACAACCATGATGCAAGTGTCGTCG TATCAGACGCATCTCGACAGTCGCCAAGACCACGTCTGCCAACAAGCTGCCGACCAACGAAGCCCAGAGAGCAGC AAGCTTTCCCCAGCGAGGGAAGCCGGCCACGTCCTCCTTTCGCCATGGCCAGAGACATTCGCCGGCCGACTTGAG ACCTACCTCGACGCCATGGACTCGGACCAATCCAAAGACGACGGACCCGACCAACTGGCCATGACGCCATCTCAC CTCGGCCGACTCGACGAAGACATCGGTCAAGTAGCCCACCTTCGGGCGAGCCTGCTAGAGAGCATCAGCCAGCTC GACAGACGGCGTACCTGCCACTCTGACCGCTGGAAGCGTGCCGGTGGCGCCGCCGACGTCGCCGCCCTCATGAAG AGCCGTGGTCTGGGTAGCTTGTTGGCCCGGACCGCGGATACGTACCAAGACCAGCCGCCGCGAGATGAATGGGAA GACTGGTCGTCTCCTCGTTCGGGCCGGTCGAGGCTACGGGGTGCAGAGCAATACTACGGGGGTGCTCCCATCATC ATCATCATCATCTTCTTCTTCTTCATCATCTTCTTCTTCTTCATCATCATCTTGTTCTTCTTCTTCCTCTTCTTC TTCTTCATCTTCTTCATCTTCCTCATCATCATCATCATCATCATCATCATCGTCTTCTTCTTCTTCTTCTTGCAG TCCCGTGTTTCATAG |
| Gene | >Ophio5|5771 ATGGCTTTTGATGGCGTCACGCGGCTTCGTCAACAGCCGTCAGTCACTCTCGTGTTGTTTGCGCATGAGGCAGGC AAACGGCGCTCAGCACCTGCCCCGGTGGTGGTGAAGAGCGGCTTCAGTCAGAGGCACGTTTGTGAGGCCGTCTCC GTCTCTTTTTTTCTGTTGGCTCTATGCTAGTTTCTTCGGGACGATATGACTAGATTCCTCTGACGCCATCAGTAG TTTTTTTTTGTTTTTTTTTCCCTTCCCTTCCTTCGGACGACATCATCACCTTATGAGCACGGCGGCAGGACCCTC GACGCGGCCATGTGGTGGGGGATGGGAATCACCGACACGGCGAAGCTGTCGAGAAGCGGGAGGCGAGTGTTTCTG CATAAGGCGGATGAACTGCTGGCCAGGTTGGAGAGGGTGAGGGAGAGGGCTGCGGGGAGAGCTGAGCCGGGAGCT GTTGCGGTTGCCATGGTTGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGGTGAA GTGAACGGGACGATGAGCATGGACAACGAGATGAACGGAACGACGACCAAAGTTTCGAACCTTGGCAAGACGAGC CGAGACGACAAGGCCGAGGAAACAAGGCAGACACAGATGCAAGACGACAGGCTAGACGGACCAGAGCTGAACAAG CCGAAGCATACGCTGACGCAAGACGCCGAGGTTGGGGAGACGAAGCAGACAACCATGATGCAAGTGTCGTCGTAT CAGACGCATCTCGACAGTCGCCAAGACCACGTCTGCCAACAAGCTGCCGACCAACGAAGCCCAGAGAGCAGCAAG CTTTCCCCAGCGAGGGAAGCCGGCCACGTCCTCCTTTCGCCATGGCCAGAGACATTCGCCGGCCGACTTGAGACC TACCTCGACGCCATGGACTCGGACCAATCCAAAGACGACGGACCCGACCAACTGGCCATGACGCCATCTCACCTC GGCCGACTCGACGAAGACATCGGTCAAGTAGCCCACCTTCGGGCGAGCCTGCTAGAGAGCATCAGCCAGCTCGAC AGACGGCGTACCTGCCACTCTGACCGCTGGAAGCGTGCCGGTGGCGCCGCCGACGTCGCCGCCCTCATGAAGAGC CGTGGTCTGGGTAGCTTGTTGGCCCGGACCGCGGATACGTACCAAGACCAGCCGCCGCGAGATGAATGGGAAGAC TGGTCGTCTCCTCGTTCGGGCCGGTCGAGGCTACGGGGTGCAGAGCAATACTACGGGGGTAGTGACTGGGCTAAG AGCGATAGAAACGTCTCCTGGTGATACAGGTGCTCCCATCATCATCATCATCATCTTCTTCTTCTTCATCATCTT CTTCTTCTTCATCATCATCTTGTTCTTCTTCTTCCTCTTCTTCTTCTTCATCTTCTTCATCTTCCTCATCATCAT CATCATCATCATCATCATCGTCTTCTTCTTCTTCTTCTTGCAGTCCCGTGTTTCATAG |